Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016240

Physical Location & Seq

Genomic Coordinates Forward (+)

26851066 .. 26851720

Gene Structure 655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1290700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGATTTCCAAAAGGGAGCAAGAACAAGAAGCAGAAGCAGAAGCACAAGAAGCAAATGATGAGATTATAGAAAGTAATGATGAAAGATTAGGTGATGATCGTGGAGGTGATAATTTCGGAGACTGGTTGAGTTTAAGCCTCAACTCCAACGAGCCATCCGAGGCGGAAGTCGATGCCGATTTTCCGTCACCAAAACCATCCAATAGCAACAAAGTTTTCTCATGCAACTTTTGCCTGAGGAAGTTTTACAGCTCACAAGCCTTGGGAGGCCATCAAAACGCACACAAGAGAGAGAGGGGAGCTGCCAAAAGGTATCAGTCTCACAGAATGATGATGTCAGCGTTGGGGTTTCCGTTTACCCCTGTCGCTGCAGCAGCTAGGTCACTCGGAGTCCAGCCTCACTCACTCGTGCAGAAACCTAGCAGCAGGTCAGATGGGTCGATGGTGGCGAGATTTAGGGAAGCCGCCGCAGGTTTTGGGATGGCATGGACACCCTTCATGCTTGAAGAAACCATGGATCATATATGGCCAGGAAGTTTCCGGATGGATCATCAATTACCCAGACAAGAATCAGATGTACATAATAAGCAGCTGGACTTAAATCTTCGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009787 GO:0009788 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010646 GO:0010648 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0023051 GO:0023057 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901419 GO:1901420 GO:1901564 GO:1901657 GO:1903506 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.89

Weight (kDa)

5.51

Isoelectric Point (pI)

63.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016240)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g16970
malus_domestica	MD02G1180000.v1.1 MD15G1290700.v1.1
prunus_persica	Prupe.6G226200_v2.0.a1
pyrus_communis	pycom02g14590
rosa_chinensis	RchiOBHm_Chr2g0107071
rosa_laevigata	RLG00000017552
rosa_multiflora	Rmu_sc0004298.1_g000006
rosa_roxburghii	Rroxscaffold_2G00136640
rosa_rugosa	Rorug02G0140200
rosa_samantha	Rh2AG191000 Rh2BG202700 Rh2CG195900 Rh2DG198200
rosa_wichuraiana	Rw2G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	417, 461
AccIII	TCCGGA	1 cut(s)	540
AciI	CCGC	3 cut(s)	164, 465, 468
AclWI	GGATC	2 cut(s)	525, 555
AcoI	YGGCCR	1 cut(s)	527
AfaI	GTAC	1 cut(s)	579
AgsI	TTSAA	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	4 cut(s)	252, 302, 377, 592
AluI	AGCT	4 cut(s)	252, 302, 377, 592
Alw26I	GTCTC	2 cut(s)	114, 324
AlwI	GGATC	2 cut(s)	525, 555
Aor13HI	TCCGGA	1 cut(s)	540
AoxI	GGCC	2 cut(s)	268, 527
ApeKI	GCWGC	6 cut(s)	302, 368, 371, 374, 423, 589
AsuHPI	GGTGA	3 cut(s)	104, 119, 180
AxyI	CCTNAGG	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	529
BauI	CACGAG	1 cut(s)	407
BbvI	GCAGC	6 cut(s)	289, 355, 383, 386, 435, 601
BccI	CCATC	7 cut(s)	163, 205, 279, 428, 436, 475, 538
BciT130I	CCWGG	1 cut(s)	531
BcoDI	GTCTC	2 cut(s)	114, 324
BfaI	CTAG	2 cut(s)	378, 420
BfmI	CTRYAG	1 cut(s)	369
BfuAI	ACCTGC	2 cut(s)	417, 461
BisI	GCNGC	8 cut(s)	303, 369, 372, 375, 424, 465, 468, 590
BlsI	GCNGC	8 cut(s)	304, 370, 373, 376, 425, 466, 469, 591
Bme1390I	CCNGG	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	531
BmsI	GCATC	1 cut(s)	163
BsaJI	CCNNGG	3 cut(s)	159, 261, 513
BsaWI	WCCGGW	1 cut(s)	540
Bse1I	ACTGG	1 cut(s)	128
Bse21I	CCTNAGG	1 cut(s)	236
BseAI	TCCGGA	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	3 cut(s)	159, 261, 513
BseGI	GGATG	4 cut(s)	155, 197, 486, 549
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	128
BseXI	GCAGC	6 cut(s)	289, 355, 383, 386, 435, 601
BsgI	GTGCAG	1 cut(s)	431
BshFI	GGCC	2 cut(s)	270, 529
BsiSI	CCGG	1 cut(s)	541
BsmAI	GTCTC	2 cut(s)	114, 324
BsnI	GGCC	2 cut(s)	270, 529
Bsp13I	TCCGGA	1 cut(s)	540
Bsp1407I	TGTACA	1 cut(s)	577
Bsp143I	GATC	3 cut(s)	97, 517, 547
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	3 cut(s)	164, 465, 468
BspANI	GGCC	2 cut(s)	270, 529
BspCNI	CTCAG	1 cut(s)	228
BspEI	TCCGGA	1 cut(s)	540
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	2 cut(s)	417, 461
BspPI	GGATC	2 cut(s)	525, 555
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	159, 261, 513
BssMI	GATC	3 cut(s)	97, 517, 547
BssSI	CACGAG	1 cut(s)	407
BssT1I	CCWWGG	2 cut(s)	261, 513
Bst2BI	CACGAG	1 cut(s)	407
Bst2UI	CCWGG	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	231
BstAUI	TGTACA	1 cut(s)	577
BstDEI	CTNAG	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	513
BstF5I	GGATG	4 cut(s)	155, 197, 486, 549
BstKTI	GATC	3 cut(s)	100, 520, 550
BstMAI	GTCTC	2 cut(s)	114, 324
BstMBI	GATC	3 cut(s)	97, 517, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 231, 374
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	529
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	6 cut(s)	289, 355, 383, 386, 435, 601
Bsu36I	CCTNAGG	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	270, 529
BtgI	CCRYGG	1 cut(s)	513
BtsCI	GGATG	4 cut(s)	155, 197, 486, 549
BveI	ACCTGC	2 cut(s)	417, 461
Csp6I	GTAC	1 cut(s)	578
CviAII	CATG	4 cut(s)	222, 486, 499, 514
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	3 cut(s)	99, 519, 549
DpnII	GATC	3 cut(s)	97, 517, 547
EaeI	YGGCCR	1 cut(s)	527
EciI	GGCGGA	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	261, 513
Eco81I	CCTNAGG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	2 cut(s)	261, 513
ErhI	CCWWGG	2 cut(s)	261, 513
FaeI	CATG	4 cut(s)	225, 489, 502, 517
FaiI	YATR	9 cut(s)	68, 223, 487, 500, 515, 522, 524, 526, 582
FatI	CATG	4 cut(s)	221, 485, 498, 513
Fnu4HI	GCNGC	8 cut(s)	303, 369, 372, 375, 424, 465, 468, 590
FokI	GGATG	4 cut(s)	142, 184, 493, 556
Fsp4HI	GCNGC	8 cut(s)	303, 369, 372, 375, 424, 465, 468, 590
FspBI	CTAG	2 cut(s)	378, 420
GluI	GCNGC	8 cut(s)	303, 369, 372, 375, 424, 465, 468, 590
HaeIII	GGCC	2 cut(s)	270, 529
HapII	CCGG	1 cut(s)	541
Hin1II	CATG	4 cut(s)	225, 489, 502, 517
HinfI	GANTC	2 cut(s)	390, 569
HpaII	CCGG	1 cut(s)	541
HphI	GGTGA	3 cut(s)	104, 119, 180
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	5 cut(s)	119, 160, 389, 433, 574
Hpy188III	TCNNGA	1 cut(s)	541
Hpy8I	GTNNAC	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	505
HpyCH4V	TGCA	3 cut(s)	225, 371, 412
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 231, 374
HpyF3I	CTNAG	1 cut(s)	236
Hsp92II	CATG	4 cut(s)	225, 489, 502, 517
Kpn2I	TCCGGA	1 cut(s)	540
Kzo9I	GATC	3 cut(s)	97, 517, 547
LmnI	GCTCC	2 cut(s)	16, 299
Lsp1109I	GCAGC	6 cut(s)	289, 355, 383, 386, 435, 601
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	378, 420
MaeIII	GTNAC	2 cut(s)	186, 381
MalI	GATC	3 cut(s)	99, 519, 549
MboI	GATC	3 cut(s)	97, 517, 547
MboII	GAAGA	2 cut(s)	518, 596
MlsI	TGGCCA	1 cut(s)	529
MluCI	AATT	2 cut(s)	112, 554
MluNI	TGGCCA	1 cut(s)	529
MlyI	GAGTC	1 cut(s)	399
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	7 cut(s)	98, 149, 154, 231, 260, 288, 408
Mox20I	TGGCCA	1 cut(s)	529
MroI	TCCGGA	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	529
MseI	TTAA	2 cut(s)	134, 599
Msp20I	TGGCCA	1 cut(s)	529
MspA1I	CMGCKG	1 cut(s)	592
MspI	CCGG	1 cut(s)	541
MspR9I	CCNGG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	3 cut(s)	50, 231, 374
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	3 cut(s)	97, 517, 547
NlaIII	CATG	4 cut(s)	225, 489, 502, 517
NmuCI	GTSAC	2 cut(s)	186, 381
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 446
PfeI	GAWTC	1 cut(s)	569
PkrI	GCNGC	8 cut(s)	304, 370, 373, 376, 425, 466, 469, 591
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PstI	CTGCAG	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	592
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
SaqAI	TTAA	2 cut(s)	134, 599
SatI	GCNGC	8 cut(s)	303, 369, 372, 375, 424, 465, 468, 590
Sau3AI	GATC	3 cut(s)	97, 517, 547
SchI	GAGTC	1 cut(s)	399
ScrFI	CCNGG	1 cut(s)	531
SfaNI	GCATC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	369
Sse9I	AATT	2 cut(s)	112, 554
SsiI	CCGC	3 cut(s)	164, 465, 468
SspMI	CTAG	2 cut(s)	378, 420
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	2 cut(s)	261, 513
TaqI	TCGA	2 cut(s)	171, 440
TasI	AATT	2 cut(s)	112, 554
TatI	WGTACW	1 cut(s)	577
TauI	GCSGC	2 cut(s)	467, 470
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	2 cut(s)	134, 599
Tru9I	TTAA	2 cut(s)	134, 599
TseFI	GTSAC	2 cut(s)	186, 381
TseI	GCWGC	6 cut(s)	302, 368, 371, 374, 423, 589
Tsp45I	GTSAC	2 cut(s)	186, 381
TspDTI	ATGAA	2 cut(s)	96, 487
TspGWI	ACGGA	2 cut(s)	174, 342
XspI	CTAG	2 cut(s)	378, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.