Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009080

Physical Location & Seq

Genomic Coordinates Forward (+)

10403376 .. 10405523

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17891.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAGAACCATTGTAGCCCTAACATAGGGACAATTAATATGATGTTGAAAGTTGTTAGACACACTTATATGTTTTCCAAAGCTAAAGAATCGTTTGAAGAAACTAAGGCTGCTAAATCTGATTCTGACCCTTTGCTGGAAGGTGGTGGTAATTCTCTTGTGCCCAATGAGTACACTTATACTTCAATGCTCAAGGCATCTGCCAGTGCTCTGCAATGGGAATACGTTGCATATGTTTACAGAGAGATGGCTCTCTCGGGATATCGAATAGATCAAAGTAAAAATGCTTCAATTCTCGGGGAAGCATCCAGAACTGGGAAGGGGTATCTACTAGAGCATGCATTTGACACAACATTGGAAGCTGGTGAAATCCCCCATCTAATTTTCTTTATTGAAATGGTATATCAACTACAGCTCGGCATGATTACAAGAGAGCGGCAACTCTGGTTAAGACAATGGTTTATGCCCCATTTCAAATCAGTGAAAAGCAGTGGACATGTTTTCAAGAAAAATGAAGACGGGGTCAGTCAGGATGGTATAAAGAAACTGCTGGATGCTCTAGAGCATTGTGATGTAACATCGGCAGCCACGCTCTTAAACTTGAAAAGTTCTTTGCATAGTCTCTGTCGGTCTTATACATCAAGAGACTTCTCAGATTTGGTATCAGTATCATCTTTAGATGATAATGATGAGGGATCTGATGATAATGAAGGGCTCATTATGCCAAATCATTCTTTAGGATATATTAATGGTAAGATGAATCCTGGCACGGACCCTCCTGATGACAGTAGTGATGCTCCTTTCAGTGAGTTTCCTCGTAGGACTTGGAGCAGTAGTATCAGAAGTGATTGCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf PPR

Protein Analysis

286

Amino Acids

31.88

Weight (kDa)

5.49

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67570
fragaria_vesca	FvH4_1g17780 FvH4_1g17780 FvH4_1g17780 FvH4_1g17891
malus_domestica	MD02G1186800.v1.1
prunus_persica	Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1
pyrus_communis	pycom02g15180
rosa_chinensis	RchiOBHm_Chr2g0108231
rosa_laevigata	RLG00000017648
rosa_multiflora	Rmu_sc0007406.1_g000010
rosa_roxburghii	Rroxscaffold_2G00135470
rosa_rugosa	Rorug02G0151200
rosa_samantha	Rh2AG199800 Rh2BG212500 Rh2CG204500 Rh2DG207400
rosa_wichuraiana	Rw2G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	436
AciI	CCGC	2 cut(s)	436, 852
AclWI	GGATC	1 cut(s)	703
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	3 cut(s)	26, 136, 315
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	8 cut(s)	49, 98, 186, 291, 395, 475, 505, 604
AjnI	CCWGG	1 cut(s)	763
AluBI	AGCT	3 cut(s)	83, 362, 415
AluI	AGCT	3 cut(s)	83, 362, 415
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	626, 639
AlwI	GGATC	1 cut(s)	703
Ama87I	CYCGRG	2 cut(s)	256, 296
ApeKI	GCWGC	2 cut(s)	110, 584
AseI	ATTAAT	2 cut(s)	36, 747
AspS9I	GGNCC	1 cut(s)	772
AsuHPI	GGTGA	1 cut(s)	377
AvaI	CYCGRG	2 cut(s)	256, 296
AvaII	GGWCC	1 cut(s)	772
BaeGI	GKGCMC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	717
BarI	GAAGNNNNNNTAC	2 cut(s)	271, 303
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	2 cut(s)	97, 596
BccI	CCATC	3 cut(s)	241, 384, 527
BciT130I	CCWGG	1 cut(s)	765
BcoDI	GTCTC	2 cut(s)	626, 639
BfaI	CTAG	2 cut(s)	332, 560
BfmI	CTRYAG	1 cut(s)	410
BisI	GCNGC	4 cut(s)	111, 437, 585, 853
BlsI	GCNGC	4 cut(s)	112, 438, 586, 854
Bme1390I	CCNGG	1 cut(s)	765
Bme18I	GGWCC	1 cut(s)	772
BmeT110I	CYCGRG	2 cut(s)	256, 296
BmgT120I	GGNCC	1 cut(s)	772
BmiI	GGNNCC	1 cut(s)	774
BmrFI	CCNGG	1 cut(s)	765
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	4 cut(s)	206, 314, 544, 784
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	176
BsaXI	ACNNNNNCTCC	4 cut(s)	760, 790, 820, 850
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 136, 315
Bse1I	ACTGG	2 cut(s)	204, 319
Bse3DI	GCAATG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	765
BseGI	GGATG	3 cut(s)	305, 538, 559
BseLI	CCNNNNNNNGG	3 cut(s)	26, 136, 315
BseMI	GCAATG	1 cut(s)	221
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	2 cut(s)	204, 319
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	97, 596
BsiHKAI	GWGCWC	1 cut(s)	211
BsiHKCI	CYCGRG	2 cut(s)	256, 296
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	26, 136, 315
BsmAI	GTCTC	2 cut(s)	626, 639
BsmFI	GGGAC	1 cut(s)	43
BsoBI	CYCGRG	2 cut(s)	256, 296
Bsp1286I	GDGCHC	3 cut(s)	165, 211, 717
Bsp143I	GATC	2 cut(s)	271, 695
BspACI	CCGC	2 cut(s)	436, 852
BspCNI	CTCAG	1 cut(s)	665
BspLI	GGNNCC	1 cut(s)	774
BspPI	GGATC	1 cut(s)	703
BsrBI	CCGCTC	1 cut(s)	436
BsrDI	GCAATG	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	204, 319
BssMI	GATC	2 cut(s)	271, 695
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	1 cut(s)	788
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	105, 652
BstENI	CCTNNNNNAGG	1 cut(s)	24
BstF5I	GGATG	3 cut(s)	305, 538, 559
BstKTI	GATC	2 cut(s)	274, 698
BstMAI	GTCTC	2 cut(s)	626, 639
BstMBI	GATC	2 cut(s)	271, 695
BstMWI	GCNNNNNNNGC	1 cut(s)	721
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	2 cut(s)	341, 500
BstSCI	CCNGG	1 cut(s)	763
BstSFI	CTRYAG	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	97, 596
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	1 cut(s)	695
BstYI	RGATCY	1 cut(s)	695
BtsCI	GGATG	3 cut(s)	305, 538, 559
BtsI	GCAGTG	1 cut(s)	496
BtsIMutI	CAGTG	4 cut(s)	211, 486, 496, 811
Cac8I	GCNNGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	772
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	3 cut(s)	338, 421, 497
CviJI	RGCY	9 cut(s)	18, 83, 110, 251, 362, 415, 587, 715, 855
CviKI_1	RGCY	9 cut(s)	18, 83, 110, 251, 362, 415, 587, 715, 855
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	105, 652
DpnI	GATC	2 cut(s)	273, 697
DpnII	GATC	2 cut(s)	271, 695
Eco24I	GRGCYC	1 cut(s)	717
Eco32I	GATATC	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	772
Eco88I	CYCGRG	2 cut(s)	256, 296
EcoNI	CCTNNNNNAGG	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	763
EcoRV	GATATC	1 cut(s)	263
EcoT22I	ATGCAT	1 cut(s)	343
EcoT38I	GRGCYC	1 cut(s)	717
FaeI	CATG	3 cut(s)	341, 424, 500
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	3 cut(s)	337, 420, 496
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	4 cut(s)	111, 437, 585, 853
FokI	GGATG	3 cut(s)	292, 545, 566
FriOI	GRGCYC	1 cut(s)	717
Fsp4HI	GCNGC	4 cut(s)	111, 437, 585, 853
FspBI	CTAG	2 cut(s)	332, 560
GluI	GCNGC	4 cut(s)	111, 437, 585, 853
Hin1II	CATG	3 cut(s)	341, 424, 500
HinfI	GANTC	3 cut(s)	89, 122, 760
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	3 cut(s)	174, 238, 494
Hpy188I	TCNGA	5 cut(s)	121, 127, 655, 700, 842
Hpy188III	TCNNGA	7 cut(s)	258, 309, 505, 530, 560, 642, 779
Hpy8I	GTNNAC	3 cut(s)	174, 238, 494
HpyAV	CCTTC	3 cut(s)	134, 313, 704
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	4 cut(s)	214, 230, 341, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	721
HpyF3I	CTNAG	2 cut(s)	105, 652
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	341, 424, 500
Kzo9I	GATC	2 cut(s)	271, 695
LmnI	GCTCC	2 cut(s)	802, 828
Lsp1109I	GCAGC	2 cut(s)	97, 596
LweI	GCATC	4 cut(s)	206, 314, 544, 784
MaeI	CTAG	2 cut(s)	332, 560
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	574
MalI	GATC	2 cut(s)	273, 697
MbiI	CCGCTC	1 cut(s)	436
MboI	GATC	2 cut(s)	271, 695
MboII	GAAGA	3 cut(s)	16, 110, 527
MflI	RGATCY	1 cut(s)	695
MhlI	GDGCHC	3 cut(s)	165, 211, 717
MluCI	AATT	4 cut(s)	33, 151, 291, 381
MnlI	CCTC	3 cut(s)	685, 786, 825
Mph1103I	ATGCAT	1 cut(s)	343
MseI	TTAA	4 cut(s)	36, 449, 596, 747
MslI	CAYNNNNRTG	2 cut(s)	68, 570
MspR9I	CCNGG	1 cut(s)	765
MvaI	CCWGG	1 cut(s)	765
MwoI	GCNNNNNNNGC	1 cut(s)	721
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	2 cut(s)	271, 695
NlaIII	CATG	3 cut(s)	341, 424, 500
NlaIV	GGNNCC	1 cut(s)	774
NmeAIII	GCCGAG	1 cut(s)	396
NsiI	ATGCAT	1 cut(s)	343
NspI	RCATGY	2 cut(s)	341, 500
PaeI	GCATGC	1 cut(s)	341
PciI	ACATGT	1 cut(s)	496
PfeI	GAWTC	3 cut(s)	89, 122, 760
PflFI	GACNNNGTC	1 cut(s)	521
PkrI	GCNGC	4 cut(s)	112, 438, 586, 854
PscI	ACATGT	1 cut(s)	496
PshBI	ATTAAT	2 cut(s)	36, 747
Psp6I	CCWGG	1 cut(s)	763
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	1 cut(s)	774
PspPI	GGNCC	1 cut(s)	772
PsuI	RGATCY	1 cut(s)	695
PsyI	GACNNNGTC	1 cut(s)	521
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	2 cut(s)	68, 570
SaqAI	TTAA	4 cut(s)	36, 449, 596, 747
SatI	GCNGC	4 cut(s)	111, 437, 585, 853
Sau3AI	GATC	2 cut(s)	271, 695
Sau96I	GGNCC	1 cut(s)	772
ScrFI	CCNGG	1 cut(s)	765
SduI	GDGCHC	3 cut(s)	165, 211, 717
SetI	ASST	5 cut(s)	85, 145, 228, 364, 417
SfaNI	GCATC	4 cut(s)	206, 314, 544, 784
SfcI	CTRYAG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	2 cut(s)	68, 570
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	341
Sse9I	AATT	4 cut(s)	33, 151, 291, 381
SsiI	CCGC	2 cut(s)	436, 852
SspMI	CTAG	2 cut(s)	332, 560
StyD4I	CCNGG	1 cut(s)	763
TaaI	ACNGT	1 cut(s)	788
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	265
TaqII	GACCGA	1 cut(s)	618
TasI	AATT	4 cut(s)	33, 151, 291, 381
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	2 cut(s)	439, 855
TfiI	GAWTC	3 cut(s)	89, 122, 760
Tru1I	TTAA	4 cut(s)	36, 449, 596, 747
Tru9I	TTAA	4 cut(s)	36, 449, 596, 747
TscAI	CASTG	4 cut(s)	211, 486, 496, 811
TseI	GCWGC	2 cut(s)	110, 584
TspDTI	ATGAA	4 cut(s)	17, 528, 723, 773
TspGWI	ACGGA	1 cut(s)	785
TspRI	CASTG	4 cut(s)	211, 486, 496, 811
Tth111I	GACNNNGTC	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	772
VspI	ATTAAT	2 cut(s)	36, 747
XagI	CCTNNNNNAGG	1 cut(s)	24
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	2 cut(s)	341, 500
XspI	CTAG	2 cut(s)	332, 560
Zsp2I	ATGCAT	1 cut(s)	343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.