Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009080

Physical Location & Seq

Genomic Coordinates Reverse (-)

73027624 .. 73032837

Gene Structure 5214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGGGTGACGTCGCCACCGACGCCCATACCAAAACTCGCCGGACGCTCGCGTGGAGAAGACGTACCAAGCGTAACGCGCCGCAAAGCACCTCTGCAAGGAGCCCTCCTCAAATCCCAAACCCCCAGTTCGAACCCAACACTGATAAAATCAAACGCAACCTCACCAACAAAGGCGTACACCCAACTCCCAAAATCGTCCACACTCTCCGCAAGAAAGAAATCCAGAAACACAACCGCAAACTCAACCGCCTCAACGAACAAGACCCACCTCTCTCCGAGTCCCAAAGCCAAGCCCTTTCCGAAGAAACCCATTTCCAAACCCTCAAAGCCGAGTACAGAAGCTTCACCAGAGCCGTGAAATCAAAGAATGGTGGCGGTGAATTGACGGTTGGGATGCCTTGGGAGAGAGTGGAGAGAATTGGGTTCCGGGAGCTGGCGAGTTGTAGCGGTGAGTATGGTGGAGAGAGGCTGAAGAAGGAGGAGTTGAATGCATTGAGGGAAATGTTCGAAACCGGAAAAAGGGATGAGCTCAAATGGGTGTTGGATGATGATGTGGAGATAAAAAAGGAGTGGTTTGATGGTGAGAATAGGGTGTGGGACCCAACCAAGCGGCGGCGCAGCGAGGGGGAGGTGATTCAGTTTCTTGTTGAGAGGCTTAGTGGTACAGAGTTTGCAATGAGGGACTGGAAGCTTTCGAGGATGATGAAGCAGTCAGGTTTGGAGTTCACTGAGGGTCAGGTTCTTAAGGTTCTGAATGGACTTGGTGCTAAGAAATGTTGGAAACAGGCATTGTCTGTTGTGGAATGGGTTTATAAGGACAGGGGCAATAAACACTGCAAAAGCAGCATTGCTGTTACACTTGGTCAAACGGGTCGTCTGAAGGAATTGCTGAAAGTTATTGAATGCATGAGGCAGAAACCTGTCAAAACAGATAGAAATATGTTTCGCAACTGGGACCCCGTCCTTGAACCCGACTTAGTTGTGTATAATGCTATACTGAACGCTTGTGTTCAATCCCATCAGTGGAAGGGTGTATATTGGGTGTTCAACCAGTTGAGAAACAGTAGTCTGAAACCTAATGGAGCAACATATGGGCTTGCTATGGAGGTAATGCTGCAGTCTGGAAAGTATGACCTCGTGCATGAATTATTTAGAAAAATGAAAAAAAGCGGAGAAGCTCCAAAAGCTCTTACCTATAAAGTTATTGTTAGAGCTTTATGGTGTGAAGGAAAAGTGAATGAAGCTGTGGAAGCAGTCAGGGACATGGAACGAAGGGGAGTGGTTGGGACAAGTGGCGTATATTACGAGTTAGCTTGCTGCCTTTGCAAGAGTGGTAGGTGGCAGGATGCTCTGTTACAGACCTGGATAATGATGGATATAGCATCTGATATTGTAAACAAGTTAGGCTTAGACATTTCCATTCAGGTTGAGAAGATGAAACATGTATCTAATACTAAACCTTTGGAGGTCACCTTCACAGGCATGATAAGGTCTTCCATGGAGGGTGGACATATTGATGACTGTATATCCATATTTGAACACATGAGGAACCATTGCACCCCTAACATAGGGACAATAAATACAATGTTGAAAGTATTTGGACGCACCGATATGTTTTCCAAAGCTAAAGAATTGTTTGAAGAAACTAAGGCTGCTAAATCTGATTCTGACCCTGACCCTTCACTGGAAGGTGGTGGTAGTTCTCTTGTGCCCGATGAGTACACATATACCTCAATGCTCAAGGCATCTGCCAGTGCTCTGCAATGGGAATACTTTGAATATGTGTACAAGGAGATGGCTCTCTCGGGATATAAAATAGATCAAAGTAAAAGTGCATCAATACTCGTGGAAGCATCCAGAGCTGGGAAGGGGTATCTACTAGAGCATGCATTTGACACCACATTGGAAGCCGGTGAAATTCCCCATCAATTGTTCTTTATTGAAATGGTATATCAAGCTACAGCTCGACATGATTACAAGAGAGCGGCAACTCTGGTTAATACAATGGCTTATGCCCCATTTCAAGTCAGCGAAAGGCAGTGGGCAGATGTTTTTGAGAAAAATGAAGACGGGATCAGTCAGGATGGTTTAACGAAACTGCTGGATGCTCTACAACACTGTGATGTTACATCGGAAGCCACGCTCGTAAACTTAAAAAAATCTTTGCAAAGGCTCATCATGCCAAATCATTCTTTAGAATATATTAATGGTAAGCCCAAGCCTGGCACTGATCCTCCTGATGACAGTAGTGATGCTCCTTTCAGTGAATTTCCTCATCGCAATAGTACCCAAAGAGATGTTGCCGCTGATATAGAGACACCTTGCAGGCCTTTGGATTATATTTATGATGAAGATGGACTAGAATTGACAGAAATCGATGAGGAAATCGAAGCACTGATAAGTAAGGATGATTCTCACGAATCTCATTCGCCCTCAGCAAAGGAAATAATGAAAGATTGGAAGGAAAGAAGGAAAAAGCGTGGGATACTCATCCCCTTTCAACACGGCCCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf PPR

Protein Analysis

838

Amino Acids

95.59

Weight (kDa)

7.83

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	324 - 364	2.5e-06	PPR repeat family
PPR_long	PF17177	328 - 430	3.8e-06	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67570
fragaria_vesca	FvH4_1g17780 FvH4_1g17780 FvH4_1g17780 FvH4_1g17891
malus_domestica	MD02G1186800.v1.1
prunus_persica	Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1
pyrus_communis	pycom02g15180
rosa_chinensis	RchiOBHm_Chr2g0108231
rosa_laevigata	RLG00000017648
rosa_multiflora	Rmu_sc0007406.1_g000010
rosa_roxburghii	Rroxscaffold_2G00135470
rosa_rugosa	Rorug02G0151200
rosa_samantha	Rh2AG199800 Rh2BG212500 Rh2CG204500 Rh2DG207400
rosa_wichuraiana	Rw2G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	813
AatII	GACGTC	1 cut(s)	12
AccBSI	CCGCTC	1 cut(s)	1985
AccII	CGCG	2 cut(s)	50, 77
AclWI	GGATC	2 cut(s)	2081, 2225
AcsI	RAATTY	2 cut(s)	1917, 2267
AcuI	CTGAAG	2 cut(s)	491, 899
AcyI	GRCGYC	2 cut(s)	9, 21
AfaI	GTAC	7 cut(s)	64, 177, 335, 664, 1721, 1787, 2287
AfiI	CCNNNNNNNGG	9 cut(s)	96, 433, 519, 612, 1023, 1568, 1684, 1863, 2222
AflII	CTTAAG	1 cut(s)	743
AflIII	ACRYGT	1 cut(s)	1441
AjnI	CCWGG	2 cut(s)	1361, 2221
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
Alw21I	GWGCWC	2 cut(s)	531, 1759
Alw26I	GTCTC	1 cut(s)	2309
AlwI	GGATC	2 cut(s)	2081, 2225
Ama87I	CYCGRG	1 cut(s)	1804
AoxI	GGCC	2 cut(s)	2327, 2506
ApeKI	GCWGC	5 cut(s)	618, 843, 1114, 1317, 1652
ApoI	RAATTY	2 cut(s)	1917, 2267
ArsI	GACNNNNNNTTYG	2 cut(s)	859, 891
AseI	ATTAAT	1 cut(s)	2205
AspLEI	GCGC	2 cut(s)	79, 618
AspS9I	GGNCC	3 cut(s)	598, 955, 2507
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	9 cut(s)	17, 154, 337, 389, 461, 593, 643, 1462, 1925
AsuII	TTCGAA	2 cut(s)	129, 507
AvaI	CYCGRG	1 cut(s)	1804
AvaII	GGWCC	2 cut(s)	598, 955
BaeGI	GKGCMC	1 cut(s)	1713
BanII	GRGCYC	2 cut(s)	104, 531
BarI	GAAGNNNNNNTAC	2 cut(s)	326, 358
BauI	CACGAG	2 cut(s)	1136, 1844
BbsI	GAAGAC	3 cut(s)	64, 1485, 2073
Bbv12I	GWGCWC	2 cut(s)	531, 1759
BbvCI	CCTCAGC	1 cut(s)	2434
BbvI	GCAGC	5 cut(s)	630, 855, 1101, 1304, 1639
BccI	CCATC	7 cut(s)	572, 1026, 1366, 1789, 1932, 2078, 2348
BceAI	ACGGC	1 cut(s)	338
BciT130I	CCWGG	2 cut(s)	1363, 2223
BciVI	GTATCC	1 cut(s)	2478
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	2309
BfaI	CTAG	2 cut(s)	1880, 2360
BfmI	CTRYAG	2 cut(s)	1115, 1959
BfrI	CTTAAG	1 cut(s)	743
BfuI	GTATCC	1 cut(s)	2478
Bme1390I	CCNGG	3 cut(s)	428, 1363, 2223
Bme18I	GGWCC	2 cut(s)	598, 955
BmeT110I	CYCGRG	1 cut(s)	1804
BmgT120I	GGNCC	3 cut(s)	598, 955, 2507
BmiI	GGNNCC	7 cut(s)	101, 425, 599, 600, 956, 957, 1550
BmrFI	CCNGG	3 cut(s)	428, 1363, 2223
BmrI	ACTGGG	2 cut(s)	118, 961
BmsI	GCATC	8 cut(s)	384, 1336, 1391, 1754, 1844, 1862, 2095, 2242
BmuI	ACTGGG	2 cut(s)	118, 961
BpiI	GAAGAC	3 cut(s)	64, 1485, 2073
BplI	GAGNNNNNCTC	2 cut(s)	91, 123
Bpu10I	CCTNAGC	1 cut(s)	2434
Bpu14I	TTCGAA	2 cut(s)	129, 507
BpuEI	CTTGAG	1 cut(s)	1724
BpuMI	CCSGG	1 cut(s)	428
Bsa29I	ATCGAT	1 cut(s)	2376
BsaBI	GATNNNNATC	1 cut(s)	2489
BsaHI	GRCGYC	2 cut(s)	9, 21
BsaJI	CCNNGG	2 cut(s)	398, 1497
BsaWI	WCCGGW	1 cut(s)	512
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 76, 2218, 2248
Bsc4I	CCNNNNNNNGG	9 cut(s)	96, 433, 519, 612, 1023, 1568, 1684, 1863, 2222
Bse118I	RCCGGY	1 cut(s)	1910
Bse1I	ACTGG	6 cut(s)	124, 689, 956, 1051, 1689, 1752
Bse3DI	GCAATG	4 cut(s)	681, 846, 1552, 1769
Bse8I	GATNNNNATC	1 cut(s)	2489
BseBI	CCWGG	2 cut(s)	1363, 2223
BseCI	ATCGAT	1 cut(s)	2376
BseDI	CCNNGG	2 cut(s)	398, 1497
BseJI	GATNNNNATC	1 cut(s)	2489
BseLI	CCNNNNNNNGG	9 cut(s)	96, 433, 519, 612, 1023, 1568, 1684, 1863, 2222
BseMI	GCAATG	4 cut(s)	681, 846, 1552, 1769
BseMII	CTCAG	2 cut(s)	720, 2448
BseNI	ACTGG	6 cut(s)	124, 689, 956, 1051, 1689, 1752
BseRI	GAGGAG	2 cut(s)	96, 494
BseSI	GKGCMC	1 cut(s)	1713
BseXI	GCAGC	5 cut(s)	630, 855, 1101, 1304, 1639
BseYI	CCCAGC	1 cut(s)	1862
Bsh1236I	CGCG	2 cut(s)	50, 77
BshFI	GGCC	2 cut(s)	2329, 2508
BshVI	ATCGAT	1 cut(s)	2376
BsiHKAI	GWGCWC	2 cut(s)	531, 1759
BsiHKCI	CYCGRG	1 cut(s)	1804
BsiSI	CCGG	4 cut(s)	40, 427, 513, 1911
BslFI	GGGAC	7 cut(s)	265, 611, 695, 968, 1274, 1300, 1585
BslI	CCNNNNNNNGG	9 cut(s)	96, 433, 519, 612, 1023, 1568, 1684, 1863, 2222
BsmAI	GTCTC	1 cut(s)	2309
BsmFI	GGGAC	7 cut(s)	265, 611, 695, 968, 1274, 1300, 1585
BsmI	GAATGC	2 cut(s)	493, 908
BsnI	GGCC	2 cut(s)	2329, 2508
BsoBI	CYCGRG	1 cut(s)	1804
Bsp119I	TTCGAA	2 cut(s)	129, 507
Bsp1286I	GDGCHC	4 cut(s)	104, 531, 1713, 1759
Bsp1407I	TGTACA	1 cut(s)	1785
Bsp143I	GATC	3 cut(s)	1819, 2073, 2230
Bsp19I	CCATGG	1 cut(s)	1497
BspANI	GGCC	2 cut(s)	2329, 2508
BspCNI	CTCAG	2 cut(s)	721, 2447
BspDI	ATCGAT	1 cut(s)	2376
BspFNI	CGCG	2 cut(s)	50, 77
BspLI	GGNNCC	7 cut(s)	101, 425, 599, 600, 956, 957, 1550
BspMAI	CTGCAG	1 cut(s)	1119
BspPI	GGATC	2 cut(s)	2081, 2225
BspT104I	TTCGAA	2 cut(s)	129, 507
BspTI	CTTAAG	1 cut(s)	743
BsrBI	CCGCTC	1 cut(s)	1985
BsrDI	GCAATG	4 cut(s)	681, 846, 1552, 1769
BsrFI	RCCGGY	1 cut(s)	1910
BsrGI	TGTACA	1 cut(s)	1785
BsrI	ACTGG	6 cut(s)	124, 689, 956, 1051, 1689, 1752
BssAI	RCCGGY	1 cut(s)	1910
BssECI	CCNNGG	2 cut(s)	398, 1497
BssMI	GATC	3 cut(s)	1819, 2073, 2230
BssNI	GRCGYC	2 cut(s)	9, 21
BssSI	CACGAG	2 cut(s)	1136, 1844
BssT1I	CCWWGG	2 cut(s)	398, 1497
Bst2BI	CACGAG	2 cut(s)	1136, 1844
Bst2UI	CCWGG	2 cut(s)	1363, 2223
Bst4CI	ACNGT	5 cut(s)	388, 1064, 1523, 2120, 2246
BstACI	GRCGYC	2 cut(s)	9, 21
BstAFI	CTTAAG	1 cut(s)	743
BstAUI	TGTACA	1 cut(s)	1785
BstBI	TTCGAA	2 cut(s)	129, 507
BstC8I	GCNNGC	6 cut(s)	48, 435, 1098, 1315, 1887, 2327
BstDEI	CTNAG	7 cut(s)	656, 729, 768, 976, 1408, 1647, 2434
BstDSI	CCRYGG	1 cut(s)	1497
BstEII	GGTNACC	1 cut(s)	1468
BstENI	CCTNNNNNAGG	2 cut(s)	94, 1566
BstFNI	CGCG	2 cut(s)	50, 77
BstHHI	GCGC	2 cut(s)	79, 618
BstKTI	GATC	3 cut(s)	1822, 2076, 2233
BstMAI	GTCTC	1 cut(s)	2309
BstMBI	GATC	3 cut(s)	1819, 2073, 2230
BstMWI	GCNNNNNNNGC	8 cut(s)	20, 76, 843, 1184, 1250, 1323, 1859, 2179
BstNI	CCWGG	2 cut(s)	1363, 2223
BstNSI	RCATGY	2 cut(s)	1445, 1889
BstPI	GGTNACC	1 cut(s)	1468
BstSCI	CCNGG	3 cut(s)	426, 1361, 2221
BstSFI	CTRYAG	2 cut(s)	1115, 1959
BstSLI	GKGCMC	1 cut(s)	1713
BstUI	CGCG	2 cut(s)	50, 77
BstV1I	GCAGC	5 cut(s)	630, 855, 1101, 1304, 1639
BstV2I	GAAGAC	3 cut(s)	64, 1485, 2073
Bsu15I	ATCGAT	1 cut(s)	2376
BsuI	GTATCC	1 cut(s)	2478
BsuRI	GGCC	2 cut(s)	2329, 2508
BsuTUI	ATCGAT	1 cut(s)	2376
BtgI	CCRYGG	1 cut(s)	1497
BtgZI	GCGATG	1 cut(s)	2261
BtsI	GCAGTG	2 cut(s)	832, 2045
Cac8I	GCNNGC	6 cut(s)	48, 435, 1098, 1315, 1887, 2327
CfoI	GCGC	2 cut(s)	79, 618
Cfr10I	RCCGGY	1 cut(s)	1910
Cfr13I	GGNCC	3 cut(s)	598, 955, 2507
ClaI	ATCGAT	1 cut(s)	2376
CseI	GACGC	3 cut(s)	29, 52, 1611
Csp6I	GTAC	7 cut(s)	63, 176, 334, 663, 1720, 1786, 2286
CspCI	CAANNNNNGTGG	2 cut(s)	1827, 1862
CviQI	GTAC	7 cut(s)	63, 176, 334, 663, 1720, 1786, 2286
DdeI	CTNAG	7 cut(s)	656, 729, 768, 976, 1408, 1647, 2434
DpnI	GATC	3 cut(s)	1821, 2075, 2232
DpnII	GATC	3 cut(s)	1819, 2073, 2230
Ecl136II	GAGCTC	1 cut(s)	529
Eco130I	CCWWGG	2 cut(s)	398, 1497
Eco147I	AGGCCT	1 cut(s)	2329
Eco24I	GRGCYC	2 cut(s)	104, 531
Eco47I	GGWCC	2 cut(s)	598, 955
Eco53kI	GAGCTC	1 cut(s)	529
Eco57I	CTGAAG	2 cut(s)	491, 899
Eco88I	CYCGRG	1 cut(s)	1804
Eco91I	GGTNACC	1 cut(s)	1468
EcoICRI	GAGCTC	1 cut(s)	529
EcoNI	CCTNNNNNAGG	2 cut(s)	94, 1566
EcoO109I	RGGNCCY	2 cut(s)	598, 955
EcoO65I	GGTNACC	1 cut(s)	1468
EcoRII	CCWGG	2 cut(s)	1361, 2221
EcoT14I	CCWWGG	2 cut(s)	398, 1497
EcoT22I	ATGCAT	3 cut(s)	493, 908, 1891
EcoT38I	GRGCYC	2 cut(s)	104, 531
ErhI	CCWWGG	2 cut(s)	398, 1497
FalI	AAGNNNNNCTT	2 cut(s)	1391, 1423
FaqI	GGGAC	7 cut(s)	265, 611, 695, 968, 1274, 1300, 1585
FauNDI	CATATG	1 cut(s)	1090
FriOI	GRGCYC	2 cut(s)	104, 531
FspBI	CTAG	2 cut(s)	1880, 2360
GlaI	GCGC	2 cut(s)	78, 617
GsaI	CCCAGC	1 cut(s)	1866
HaeIII	GGCC	2 cut(s)	2329, 2508
HapII	CCGG	4 cut(s)	40, 427, 513, 1911
HgaI	GACGC	3 cut(s)	29, 52, 1611
HhaI	GCGC	2 cut(s)	79, 618
Hin1I	GRCGYC	2 cut(s)	9, 21
Hin6I	GCGC	2 cut(s)	77, 616
HinP1I	GCGC	2 cut(s)	77, 616
HindIII	AAGCTT	2 cut(s)	340, 689
HinfI	GANTC	5 cut(s)	278, 634, 1664, 2411, 2420
HpaII	CCGG	4 cut(s)	40, 427, 513, 1911
HphI	GGTGA	9 cut(s)	17, 154, 337, 389, 461, 593, 643, 1462, 1925
Hpy166II	GTNNAC	8 cut(s)	178, 199, 726, 1396, 1508, 1722, 1786, 2149
Hpy188I	TCNGA	9 cut(s)	277, 301, 753, 879, 1071, 1387, 1663, 1669, 2134
Hpy188III	TCNNGA	7 cut(s)	223, 1122, 1806, 1857, 2081, 2237, 2417
Hpy8I	GTNNAC	8 cut(s)	178, 199, 726, 1396, 1508, 1722, 1786, 2149
Hpy99I	CGWCG	2 cut(s)	14, 23
HpyCH4III	ACNGT	5 cut(s)	388, 1064, 1523, 2120, 2246
HpyCH4IV	ACGT	2 cut(s)	9, 61
HpyF10VI	GCNNNNNNNGC	8 cut(s)	20, 76, 843, 1184, 1250, 1323, 1859, 2179
HpyF3I	CTNAG	7 cut(s)	656, 729, 768, 976, 1408, 1647, 2434
HpySE526I	ACGT	2 cut(s)	9, 61
Hsp92I	GRCGYC	2 cut(s)	9, 21
HspAI	GCGC	2 cut(s)	77, 616
KflI	GGGWCCC	2 cut(s)	598, 955
Kzo9I	GATC	3 cut(s)	1819, 2073, 2230
LmnI	GCTCC	5 cut(s)	99, 430, 1082, 1183, 2260
Lsp1109I	GCAGC	5 cut(s)	630, 855, 1101, 1304, 1639
LweI	GCATC	8 cut(s)	384, 1336, 1391, 1754, 1844, 1862, 2095, 2242
MaeI	CTAG	2 cut(s)	1880, 2360
MaeII	ACGT	2 cut(s)	9, 61
MaeIII	GTNAC	6 cut(s)	5, 71, 853, 1353, 1468, 2125
MalI	GATC	3 cut(s)	1821, 2075, 2232
MbiI	CCGCTC	1 cut(s)	1985
MboI	GATC	3 cut(s)	1819, 2073, 2230
MboII	GAAGA	8 cut(s)	69, 314, 484, 1444, 1485, 1652, 2078, 2363
MfeI	CAATTG	1 cut(s)	1928
MhlI	GDGCHC	4 cut(s)	104, 531, 1713, 1759
MluCI	AATT	9 cut(s)	380, 417, 884, 1145, 1631, 1917, 1928, 2267, 2363
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	2 cut(s)	522, 758
Mph1103I	ATGCAT	3 cut(s)	493, 908, 1891
MseI	TTAA	5 cut(s)	744, 1998, 2090, 2153, 2205
MslI	CAYNNNNRTG	4 cut(s)	1481, 1515, 1610, 2121
MspA1I	CMGCKG	1 cut(s)	2306
MspCI	CTTAAG	1 cut(s)	743
MspI	CCGG	4 cut(s)	40, 427, 513, 1911
MspR9I	CCNGG	3 cut(s)	428, 1363, 2223
MunI	CAATTG	1 cut(s)	1928
Mva1269I	GAATGC	2 cut(s)	493, 908
MvaI	CCWGG	2 cut(s)	1363, 2223
MvnI	CGCG	2 cut(s)	50, 77
MwoI	GCNNNNNNNGC	8 cut(s)	20, 76, 843, 1184, 1250, 1323, 1859, 2179
NciI	CCSGG	1 cut(s)	428
NcoI	CCATGG	1 cut(s)	1497
NdeI	CATATG	1 cut(s)	1090
NdeII	GATC	3 cut(s)	1819, 2073, 2230
NlaIV	GGNNCC	7 cut(s)	101, 425, 599, 600, 956, 957, 1550
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	2 cut(s)	5, 1468
NsiI	ATGCAT	3 cut(s)	493, 908, 1891
NspI	RCATGY	2 cut(s)	1445, 1889
NspV	TTCGAA	2 cut(s)	129, 507
PaeI	GCATGC	1 cut(s)	1889
PceI	AGGCCT	1 cut(s)	2329
PciI	ACATGT	1 cut(s)	1441
PcsI	WCGNNNNNNNCGW	2 cut(s)	15, 67
PctI	GAATGC	2 cut(s)	493, 908
PfeI	GAWTC	4 cut(s)	634, 1664, 2411, 2420
PflFI	GACNNNGTC	1 cut(s)	959
PfoI	TCCNGGA	1 cut(s)	426
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PpuMI	RGGWCCY	2 cut(s)	598, 955
PscI	ACATGT	1 cut(s)	1441
PshBI	ATTAAT	1 cut(s)	2205
PsiI	TTATAA	1 cut(s)	813
Psp124BI	GAGCTC	1 cut(s)	531
Psp5II	RGGWCCY	2 cut(s)	598, 955
Psp6I	CCWGG	2 cut(s)	1361, 2221
PspEI	GGTNACC	1 cut(s)	1468
PspFI	CCCAGC	1 cut(s)	1862
PspGI	CCWGG	2 cut(s)	1361, 2221
PspN4I	GGNNCC	7 cut(s)	101, 425, 599, 600, 956, 957, 1550
PspPI	GGNCC	3 cut(s)	598, 955, 2507
PspPPI	RGGWCCY	2 cut(s)	598, 955
PstI	CTGCAG	1 cut(s)	1119
PsyI	GACNNNGTC	1 cut(s)	959
RsaI	GTAC	7 cut(s)	64, 177, 335, 664, 1721, 1787, 2287
RsaNI	GTAC	7 cut(s)	63, 176, 334, 663, 1720, 1786, 2286
RseI	CAYNNNNRTG	4 cut(s)	1481, 1515, 1610, 2121
SacI	GAGCTC	1 cut(s)	531
SaqAI	TTAA	5 cut(s)	744, 1998, 2090, 2153, 2205
Sau3AI	GATC	3 cut(s)	1819, 2073, 2230
Sau96I	GGNCC	3 cut(s)	598, 955, 2507
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	3 cut(s)	428, 1363, 2223
SduI	GDGCHC	4 cut(s)	104, 531, 1713, 1759
SfaNI	GCATC	8 cut(s)	384, 1336, 1391, 1754, 1844, 1862, 2095, 2242
SfcI	CTRYAG	2 cut(s)	1115, 1959
SfuI	TTCGAA	2 cut(s)	129, 507
SinI	GGWCC	2 cut(s)	598, 955
SmiMI	CAYNNNNRTG	4 cut(s)	1481, 1515, 1610, 2121
SmlI	CTYRAG	2 cut(s)	743, 1739
SmoI	CTYRAG	2 cut(s)	743, 1739
SphI	GCATGC	1 cut(s)	1889
Sse9I	AATT	9 cut(s)	380, 417, 884, 1145, 1631, 1917, 1928, 2267, 2363
SseBI	AGGCCT	1 cut(s)	2329
SspMI	CTAG	2 cut(s)	1880, 2360
SstI	GAGCTC	1 cut(s)	531
StuI	AGGCCT	1 cut(s)	2329
StyD4I	CCNGG	3 cut(s)	426, 1361, 2221
StyI	CCWWGG	2 cut(s)	398, 1497
TaaI	ACNGT	5 cut(s)	388, 1064, 1523, 2120, 2246
TaiI	ACGT	2 cut(s)	12, 64
TaqI	TCGA	6 cut(s)	129, 507, 695, 1966, 2376, 2388
TasI	AATT	9 cut(s)	380, 417, 884, 1145, 1631, 1917, 1928, 2267, 2363
TatI	WGTACW	3 cut(s)	333, 1719, 1785
TauI	GCSGC	5 cut(s)	82, 613, 616, 1988, 2306
TfiI	GAWTC	4 cut(s)	634, 1664, 2411, 2420
Tru1I	TTAA	5 cut(s)	744, 1998, 2090, 2153, 2205
Tru9I	TTAA	5 cut(s)	744, 1998, 2090, 2153, 2205
TseFI	GTSAC	2 cut(s)	5, 1468
TseI	GCWGC	5 cut(s)	618, 843, 1114, 1317, 1652
Tsp45I	GTSAC	2 cut(s)	5, 1468
TspDTI	ATGAA	8 cut(s)	719, 1158, 1175, 1254, 1451, 2079, 2364, 2465
Tth111I	GACNNNGTC	1 cut(s)	959
Vha464I	CTTAAG	1 cut(s)	743
VpaK11BI	GGWCC	2 cut(s)	598, 955
VspI	ATTAAT	1 cut(s)	2205
XagI	CCTNNNNNAGG	2 cut(s)	94, 1566
XapI	RAATTY	2 cut(s)	1917, 2267
XceI	RCATGY	2 cut(s)	1445, 1889
XspI	CTAG	2 cut(s)	1880, 2360
ZraI	GACGTC	1 cut(s)	10
Zsp2I	ATGCAT	3 cut(s)	493, 908, 1891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.