Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009080

Physical Location & Seq

Genomic Coordinates Forward (+)

19474348 .. 19478892

Gene Structure 4545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017648

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2580 bp

ATGGAAGCTCTGCAAGGATCCCTCCCTCAAATCCCAAACCCCCAATTCGAACCAAACACTGATAAAATCAAACGCAACCTCACCAACAAAGGCGTCCACCCAACTCCCAAAATCGTCCACACTCTCCGCAAGAAACAAATCCAGAAACACAACCGCAAACTCAACCGCCTCAACGAACAAGACCCACCTCTCTCCGAATCCCAAAGCCAAGCTCTTTCCGAAGAAACCCACTTCCAAACCCTCAAAGCCGAGTACAGAAGCTTCACCAGAGCCGTCAAATCAAAGAATGGTGGAGGTGAATTGACGGTTGGGATGCCTTGGGAGAGAGTGGAGAGAATTGGGTACCGGGAGCTGGCGAGTAGTAGCGGCGAGTACGGCGGAGAGAAGCTGAAGAAGGAGGAGTTGAATGCATTGAGGGAAATGTTCGAAACCCGAAAAAGGGAGGAGCTGAAATGGGTGTTGGATGATGATGTGGAGATGAAAGAGGAGTGGTTTGATGGTGAGAATAGGGTGTGGGACCCGACGAAGCGGCGGCGCGGCGAGGGGGAGGTGATTCAGTTTCTTGTTGAGAGGCTTAGTGGTACAGAGTTTGCAATGAGGGACTGGAAGCTTTCGAGGATGATGAAGCAGTCAGGTTTGGAGTTCACTGAGGGTCAGGTTCTTAAGGTTTTGAATGGGCTTGGTGCTAAGAAATGTTGGAAGCAGGCACTGGCTGTGGTGGAATGGGTTTATAAGGACAGGGGCAATAAACACTGCAAAAGCAGGTTTGTGTACACGAAACTTTTGGCAATTCTTGGGAAGGCACGAAAGCCCCAGGAAGCTCTTGACATTTACAACATGATGCGGGGAGATTGTCATATGTATCCGGATATTGCTGCCTATCATAGCATTGCTGTGACACTCGGTCAAACAGGTCGTCTGAAGGAATTGCTGAAAGTTATGGAATGCATGAGGCAGAAACCTGTCAAAATAGATAGAAATATGTTTCGCAACTGGGACCCTGTCCTTGAACCTGATGTAGTTGTGTATAATGCTATACTGAATGCTTGTGTTCAATCCCATCAGTGGAAGAGTGTATATTGGGTGTTCAACCAGTTGAGAAAGAGTGGTCTGAAACCTAATGGAGCAACATATGGGCTTGCTATGGAGGTGATGCTGCAGTCTGGAAAGTATGACCTCGTGCATGAATTATTTAGAAAAATGAAAAAAAGCGGAGAAGCTCCGAAAGCTCTTACCTATAAAGTTATTGTCAGAGCTTTATGGTGTGAAGGAAAAGTGAATGAAGCTGTGGAAGCAGTCAGGGACATGGAACGAAGGGGAGTGGTTGGGACAAGCGGTGTATACTACGAGTTAGCTTGCTGCCTTTGCAAGAGTGGTAGGTGGCAGGATGCTCTGTTACAGGTTGAGAAGATGAAACATGTATGTAATACTAAACCTTTGGAGGTCACCTTCACAGGCATGATAAGGTCTTCCATGGAGAGTGGACATATTGATGACTGTATATCCATATTTGAACACATGAAGAACCATTGCACCCCTAACATAGGGACAATAAATACGATGTTGAAAGTATTTGGACGCACCGATATGTTTTCCAAAGCTAAAGAATTGTTTGAAGAAACCAAAGCTGCTAAATCTGATTCTGACCCTTCACTGGTGGGTGGTGGTAGTTCTCTTGTGCCCGATGAGTACACATATACCTCAATGCTCAAGGCATCTGCCAGTGCTCTGCAATGGGAATACTTTGAATATGTGTACAAGGAGATGGCTCTCTCGGGATATAAAATAGATCAAAGTAAAAATGCATCAATACTCGTGGAAGCATCCAGAGCTGGGAAGGGGTATCTACTAGAGCATGCATTTGACACCACATTGGAAGCCGGTGAAATTCCCCATCAATTGTTCTTCATTGAAATGGTATATCAAGCTACAGCTCGACATGATCACAAGAGAGCGGCAACTCTGGTTAATACAATGGCTTATGCCCCATTTCAAGTCAGCGAAAGGCAGTGGACAGATGTTTTTGAGAAAAATGAAGACGGGATCAGTCAGGATGGTTTAACGAAACTGCTGGATGCTCTACAGCACTGTGAGGTTACATCAGAAGCCACGCTCTTAAACTTAAAAAGATCTTTGCAAAGTCTCTGTCAGTCGTATACATCAAGAGACTTCTCAAATTCTATGTCAGTATCATCTTTGGATGATAATGATGAGGGATTTGATGATAATGAAGGGCTCATCATGCCAAATCATTCTTTAGAATATATTAATGGTAAGCCCAAGCCTGGCACTGATCCTCCTGATGACAGTAGTGATGCTCCTTTTAGTGAATTTCCTCATCGCAGTAGTACCCAAAGAGATGTTGCCGCTGATATAGAGACACTTTCCGAGCCTTTGGATTATATTTCTGATGAAGATGGACTAGACTCGACAGAAATCGATGAGGAAATCGAAGCACTGATAAGTATGGATGATTCTCACGAATCTCATTCGCCCTCAGCAAAGGAAATAATGAAAGATTGGAAAGAAAGAAGGAAAAAGCATGGGATGCTCATGCCCTTTCAACTCGGCCAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf PPR

Protein Analysis

860

Amino Acids

97.95

Weight (kDa)

6.15

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	336 - 384	6.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	338 - 378	8.1e-09	PPR repeat family
PPR_long	PF17177	342 - 444	9.1e-07	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67570
fragaria_vesca	FvH4_1g17780 FvH4_1g17780 FvH4_1g17780 FvH4_1g17891
malus_domestica	MD02G1186800.v1.1
prunus_persica	Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1
pyrus_communis	pycom02g15180
rosa_chinensis	RchiOBHm_Chr2g0108231
rosa_laevigata	RLG00000017648
rosa_multiflora	Rmu_sc0007406.1_g000010
rosa_roxburghii	Rroxscaffold_2G00135470
rosa_rugosa	Rorug02G0151200
rosa_samantha	Rh2AG199800 Rh2BG212500 Rh2CG204500 Rh2DG207400
rosa_wichuraiana	Rw2G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	732
Acc36I	ACCTGC	1 cut(s)	753
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	342
AccBSI	CCGCTC	1 cut(s)	1955
AccI	GTMKAC	2 cut(s)	1341, 2156
AccII	CGCG	1 cut(s)	537
AccIII	TCCGGA	1 cut(s)	865
AclWI	GGATC	4 cut(s)	12, 25, 2051, 2288
AcoI	YGGCCR	1 cut(s)	2569
AcsI	RAATTY	3 cut(s)	1887, 2176, 2330
AcuI	CTGAAG	2 cut(s)	410, 941
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	8 cut(s)	254, 344, 374, 583, 773, 1691, 1757, 2350
AfiI	CCNNNNNNNGG	8 cut(s)	352, 438, 439, 1065, 1544, 1654, 1833, 2285
AflII	CTTAAG	1 cut(s)	662
AflIII	ACRYGT	1 cut(s)	1417
AhdI	GACNNNNNGTC	1 cut(s)	903
AjnI	CCWGG	2 cut(s)	813, 2284
AjuI	GAANNNNNNNTTGG	4 cut(s)	291, 323, 443, 475
Alw21I	GWGCWC	1 cut(s)	1729
Alw26I	GTCTC	3 cut(s)	2147, 2160, 2372
AlwI	GGATC	4 cut(s)	12, 25, 2051, 2288
AlwNI	CAGNNNCTG	1 cut(s)	709
Ama87I	CYCGRG	1 cut(s)	1774
Aor13HI	TCCGGA	1 cut(s)	865
AoxI	GGCC	1 cut(s)	2569
ApeKI	GCWGC	4 cut(s)	875, 1156, 1359, 1628
ApoI	RAATTY	3 cut(s)	1887, 2176, 2330
ArsI	GACNNNNNNTTYG	6 cut(s)	901, 933, 2131, 2163, 2168, 2200
AseI	ATTAAT	1 cut(s)	2268
Asp718I	GGTACC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	2 cut(s)	517, 997
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	8 cut(s)	73, 256, 308, 512, 562, 1162, 1438, 1895
AsuII	TTCGAA	2 cut(s)	48, 426
AvaI	CYCGRG	1 cut(s)	1774
AvaII	GGWCC	2 cut(s)	517, 997
BaeGI	GKGCMC	1 cut(s)	1683
BamHI	GGATCC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	2238
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BauI	CACGAG	2 cut(s)	1178, 1814
BbsI	GAAGAC	2 cut(s)	1461, 2043
Bbv12I	GWGCWC	1 cut(s)	1729
BbvCI	CCTCAGC	1 cut(s)	2497
BbvI	GCAGC	4 cut(s)	862, 1143, 1346, 1615
BccI	CCATC	6 cut(s)	491, 1068, 1759, 1902, 2048, 2411
BceAI	ACGGC	2 cut(s)	257, 391
BciT130I	CCWGG	2 cut(s)	815, 2286
BciVI	GTATCC	1 cut(s)	873
BclI	TGATCA	1 cut(s)	1942
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	3 cut(s)	2147, 2160, 2372
BfaI	CTAG	2 cut(s)	1850, 2423
BfmI	CTRYAG	3 cut(s)	1157, 1929, 2081
BfrI	CTTAAG	1 cut(s)	662
BfuAI	ACCTGC	1 cut(s)	753
BfuI	GTATCC	1 cut(s)	873
BglII	AGATCT	1 cut(s)	2129
Bme1390I	CCNGG	3 cut(s)	347, 815, 2286
Bme18I	GGWCC	2 cut(s)	517, 997
BmeRI	GACNNNNNGTC	1 cut(s)	903
BmeT110I	CYCGRG	1 cut(s)	1774
BmgT120I	GGNCC	2 cut(s)	517, 997
BmiI	GGNNCC	6 cut(s)	19, 344, 518, 519, 998, 999
BmrFI	CCNGG	3 cut(s)	347, 815, 2286
BmrI	ACTGGG	1 cut(s)	1003
BmuI	ACTGGG	1 cut(s)	1003
BpiI	GAAGAC	2 cut(s)	1461, 2043
Bpu10I	CCTNAGC	1 cut(s)	2497
Bpu14I	TTCGAA	2 cut(s)	48, 426
BpuEI	CTTGAG	1 cut(s)	1694
BpuMI	CCSGG	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	2439
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	3 cut(s)	317, 813, 1473
BsaWI	WCCGGW	1 cut(s)	865
BsaXI	ACNNNNNCTCC	2 cut(s)	2281, 2311
Bsc4I	CCNNNNNNNGG	8 cut(s)	352, 438, 439, 1065, 1544, 1654, 1833, 2285
Bse118I	RCCGGY	1 cut(s)	1880
Bse1I	ACTGG	6 cut(s)	608, 714, 998, 1093, 1659, 1722
Bse3DI	GCAATG	4 cut(s)	600, 888, 1528, 1739
BseAI	TCCGGA	1 cut(s)	865
BseBI	CCWGG	2 cut(s)	815, 2286
BseCI	ATCGAT	1 cut(s)	2439
BseDI	CCNNGG	3 cut(s)	317, 813, 1473
BseLI	CCNNNNNNNGG	8 cut(s)	352, 438, 439, 1065, 1544, 1654, 1833, 2285
BseMI	GCAATG	4 cut(s)	600, 888, 1528, 1739
BseMII	CTCAG	2 cut(s)	639, 2511
BseNI	ACTGG	6 cut(s)	608, 714, 998, 1093, 1659, 1722
BseRI	GAGGAG	3 cut(s)	413, 458, 500
BseSI	GKGCMC	1 cut(s)	1683
BseXI	GCAGC	4 cut(s)	862, 1143, 1346, 1615
BseYI	CCCAGC	1 cut(s)	1832
Bsh1236I	CGCG	1 cut(s)	537
BshFI	GGCC	1 cut(s)	2571
BshNI	GGYRCC	1 cut(s)	342
BshVI	ATCGAT	1 cut(s)	2439
BsiHKAI	GWGCWC	1 cut(s)	1729
BsiHKCI	CYCGRG	1 cut(s)	1774
BsiSI	CCGG	3 cut(s)	346, 866, 1881
BslFI	GGGAC	6 cut(s)	530, 614, 1010, 1316, 1342, 1561
BslI	CCNNNNNNNGG	8 cut(s)	352, 438, 439, 1065, 1544, 1654, 1833, 2285
BsmAI	GTCTC	3 cut(s)	2147, 2160, 2372
BsmFI	GGGAC	6 cut(s)	530, 614, 1010, 1316, 1342, 1561
BsmI	GAATGC	3 cut(s)	412, 950, 1048
BsnI	GGCC	1 cut(s)	2571
BsoBI	CYCGRG	1 cut(s)	1774
Bsp119I	TTCGAA	2 cut(s)	48, 426
Bsp1286I	GDGCHC	3 cut(s)	1683, 1729, 2238
Bsp13I	TCCGGA	1 cut(s)	865
Bsp1407I	TGTACA	2 cut(s)	771, 1755
Bsp143I	GATC	6 cut(s)	17, 1789, 1942, 2043, 2129, 2293
Bsp19I	CCATGG	1 cut(s)	1473
BspANI	GGCC	1 cut(s)	2571
BspCNI	CTCAG	2 cut(s)	640, 2510
BspDI	ATCGAT	1 cut(s)	2439
BspEI	TCCGGA	1 cut(s)	865
BspFNI	CGCG	1 cut(s)	537
BspLI	GGNNCC	6 cut(s)	19, 344, 518, 519, 998, 999
BspMAI	CTGCAG	1 cut(s)	1161
BspMI	ACCTGC	1 cut(s)	753
BspPI	GGATC	4 cut(s)	12, 25, 2051, 2288
BspT104I	TTCGAA	2 cut(s)	48, 426
BspT107I	GGYRCC	1 cut(s)	342
BspTI	CTTAAG	1 cut(s)	662
BsrBI	CCGCTC	1 cut(s)	1955
BsrDI	GCAATG	4 cut(s)	600, 888, 1528, 1739
BsrFI	RCCGGY	1 cut(s)	1880
BsrGI	TGTACA	2 cut(s)	771, 1755
BsrI	ACTGG	6 cut(s)	608, 714, 998, 1093, 1659, 1722
BssAI	RCCGGY	1 cut(s)	1880
BssECI	CCNNGG	3 cut(s)	317, 813, 1473
BssMI	GATC	6 cut(s)	17, 1789, 1942, 2043, 2129, 2293
BssNAI	GTATAC	2 cut(s)	1342, 2157
BssNI	GRCGYC	1 cut(s)	93
BssSI	CACGAG	2 cut(s)	1178, 1814
BssT1I	CCWWGG	2 cut(s)	317, 1473
Bst1107I	GTATAC	2 cut(s)	1342, 2157
Bst2BI	CACGAG	2 cut(s)	1178, 1814
Bst2UI	CCWGG	2 cut(s)	815, 2286
Bst4CI	ACNGT	4 cut(s)	307, 1499, 2090, 2309
Bst6I	CTCTTC	1 cut(s)	1064
BstACI	GRCGYC	1 cut(s)	93
BstAFI	CTTAAG	1 cut(s)	662
BstAPI	GCANNNNNTGC	1 cut(s)	2548
BstAUI	TGTACA	2 cut(s)	771, 1755
BstBI	TTCGAA	2 cut(s)	48, 426
BstC8I	GCNNGC	5 cut(s)	354, 705, 1140, 1357, 1857
BstDEI	CTNAG	4 cut(s)	575, 648, 687, 2497
BstDSI	CCRYGG	1 cut(s)	1473
BstEII	GGTNACC	1 cut(s)	1444
BstENI	CCTNNNNNAGG	1 cut(s)	1542
BstFNI	CGCG	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	6 cut(s)	20, 1792, 1945, 2046, 2132, 2296
BstMAI	GTCTC	3 cut(s)	2147, 2160, 2372
BstMBI	GATC	6 cut(s)	17, 1789, 1942, 2043, 2129, 2293
BstMWI	GCNNNNNNNGC	7 cut(s)	375, 1226, 1292, 1365, 1829, 2242, 2548
BstNI	CCWGG	2 cut(s)	815, 2286
BstNSI	RCATGY	2 cut(s)	1421, 1859
BstPI	GGTNACC	1 cut(s)	1444
BstSCI	CCNGG	3 cut(s)	345, 813, 2284
BstSFI	CTRYAG	3 cut(s)	1157, 1929, 2081
BstSLI	GKGCMC	1 cut(s)	1683
BstUI	CGCG	1 cut(s)	537
BstV1I	GCAGC	4 cut(s)	862, 1143, 1346, 1615
BstV2I	GAAGAC	2 cut(s)	1461, 2043
BstX2I	RGATCY	2 cut(s)	17, 2129
BstYI	RGATCY	2 cut(s)	17, 2129
BstZ17I	GTATAC	2 cut(s)	1342, 2157
Bsu15I	ATCGAT	1 cut(s)	2439
BsuI	GTATCC	1 cut(s)	873
BsuRI	GGCC	1 cut(s)	2571
BsuTUI	ATCGAT	1 cut(s)	2439
BtgI	CCRYGG	1 cut(s)	1473
BtgZI	GCGATG	1 cut(s)	2324
BtsI	GCAGTG	2 cut(s)	751, 2015
BveI	ACCTGC	1 cut(s)	753
Cac8I	GCNNGC	5 cut(s)	354, 705, 1140, 1357, 1857
CaiI	CAGNNNCTG	1 cut(s)	709
CfoI	GCGC	1 cut(s)	537
Cfr10I	RCCGGY	1 cut(s)	1880
Cfr13I	GGNCC	2 cut(s)	517, 997
ClaI	ATCGAT	1 cut(s)	2439
CseI	GACGC	2 cut(s)	82, 1587
Csp6I	GTAC	8 cut(s)	253, 343, 373, 582, 772, 1690, 1756, 2349
CspCI	CAANNNNNGTGG	2 cut(s)	1797, 1832
CviQI	GTAC	8 cut(s)	253, 343, 373, 582, 772, 1690, 1756, 2349
DdeI	CTNAG	4 cut(s)	575, 648, 687, 2497
DpnI	GATC	6 cut(s)	19, 1791, 1944, 2045, 2131, 2295
DpnII	GATC	6 cut(s)	17, 1789, 1942, 2043, 2129, 2293
DriI	GACNNNNNGTC	1 cut(s)	903
EaeI	YGGCCR	1 cut(s)	2569
Eam1104I	CTCTTC	1 cut(s)	1064
Eam1105I	GACNNNNNGTC	1 cut(s)	903
EarI	CTCTTC	1 cut(s)	1064
EciI	GGCGGA	1 cut(s)	393
Eco130I	CCWWGG	2 cut(s)	317, 1473
Eco24I	GRGCYC	1 cut(s)	2238
Eco47I	GGWCC	2 cut(s)	517, 997
Eco57I	CTGAAG	2 cut(s)	410, 941
Eco88I	CYCGRG	1 cut(s)	1774
Eco91I	GGTNACC	1 cut(s)	1444
EcoNI	CCTNNNNNAGG	1 cut(s)	1542
EcoO109I	RGGNCCY	2 cut(s)	517, 997
EcoO65I	GGTNACC	1 cut(s)	1444
EcoRII	CCWGG	2 cut(s)	813, 2284
EcoT14I	CCWWGG	2 cut(s)	317, 1473
EcoT22I	ATGCAT	4 cut(s)	412, 950, 1807, 1861
EcoT38I	GRGCYC	1 cut(s)	2238
ErhI	CCWWGG	2 cut(s)	317, 1473
FaqI	GGGAC	6 cut(s)	530, 614, 1010, 1316, 1342, 1561
FauI	CCCGC	1 cut(s)	837
FauNDI	CATATG	2 cut(s)	858, 1132
FbaI	TGATCA	1 cut(s)	1942
FblI	GTMKAC	2 cut(s)	1341, 2156
FriOI	GRGCYC	1 cut(s)	2238
FspBI	CTAG	2 cut(s)	1850, 2423
GlaI	GCGC	1 cut(s)	536
GsaI	CCCAGC	1 cut(s)	1836
HaeIII	GGCC	1 cut(s)	2571
HapII	CCGG	3 cut(s)	346, 866, 1881
HgaI	GACGC	2 cut(s)	82, 1587
HhaI	GCGC	1 cut(s)	537
Hin1I	GRCGYC	1 cut(s)	93
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HindIII	AAGCTT	2 cut(s)	259, 608
HinfI	GANTC	6 cut(s)	197, 553, 1640, 2426, 2474, 2483
HpaII	CCGG	3 cut(s)	346, 866, 1881
HphI	GGTGA	8 cut(s)	73, 256, 308, 512, 562, 1162, 1438, 1895
Hpy99I	CGWCG	1 cut(s)	526
HpyCH4III	ACNGT	4 cut(s)	307, 1499, 2090, 2309
HpyF10VI	GCNNNNNNNGC	7 cut(s)	375, 1226, 1292, 1365, 1829, 2242, 2548
HpyF3I	CTNAG	4 cut(s)	575, 648, 687, 2497
Hsp92I	GRCGYC	1 cut(s)	93
HspAI	GCGC	1 cut(s)	535
KflI	GGGWCCC	2 cut(s)	517, 997
Kpn2I	TCCGGA	1 cut(s)	865
KpnI	GGTACC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	1942
Kzo9I	GATC	6 cut(s)	17, 1789, 1942, 2043, 2129, 2293
LmnI	GCTCC	5 cut(s)	349, 445, 1124, 1225, 2323
Lsp1109I	GCAGC	4 cut(s)	862, 1143, 1346, 1615
MaeI	CTAG	2 cut(s)	1850, 2423
MaeIII	GTNAC	4 cut(s)	895, 1395, 1444, 2095
MalI	GATC	6 cut(s)	19, 1791, 1944, 2045, 2131, 2295
MbiI	CCGCTC	1 cut(s)	1955
MboI	GATC	6 cut(s)	17, 1789, 1942, 2043, 2129, 2293
MfeI	CAATTG	1 cut(s)	1898
MflI	RGATCY	2 cut(s)	17, 2129
MhlI	GDGCHC	3 cut(s)	1683, 1729, 2238
MlyI	GAGTC	1 cut(s)	2420
MmeI	TCCRAC	2 cut(s)	441, 677
Mph1103I	ATGCAT	4 cut(s)	412, 950, 1807, 1861
MroI	TCCGGA	1 cut(s)	865
MseI	TTAA	6 cut(s)	663, 1968, 2060, 2117, 2123, 2268
MslI	CAYNNNNRTG	5 cut(s)	893, 1457, 1491, 1586, 1913
MspA1I	CMGCKG	1 cut(s)	2369
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	3 cut(s)	346, 866, 1881
MspR9I	CCNGG	3 cut(s)	347, 815, 2286
MunI	CAATTG	1 cut(s)	1898
Mva1269I	GAATGC	3 cut(s)	412, 950, 1048
MvaI	CCWGG	2 cut(s)	815, 2286
MvnI	CGCG	1 cut(s)	537
MwoI	GCNNNNNNNGC	7 cut(s)	375, 1226, 1292, 1365, 1829, 2242, 2548
NciI	CCSGG	1 cut(s)	347
NcoI	CCATGG	1 cut(s)	1473
NdeI	CATATG	2 cut(s)	858, 1132
NdeII	GATC	6 cut(s)	17, 1789, 1942, 2043, 2129, 2293
NlaIV	GGNNCC	6 cut(s)	19, 344, 518, 519, 998, 999
NmeAIII	GCCGAG	2 cut(s)	274, 2547
NmuCI	GTSAC	2 cut(s)	895, 1444
NsiI	ATGCAT	4 cut(s)	412, 950, 1807, 1861
NspI	RCATGY	2 cut(s)	1421, 1859
NspV	TTCGAA	2 cut(s)	48, 426
PaeI	GCATGC	1 cut(s)	1859
PciI	ACATGT	1 cut(s)	1417
PctI	GAATGC	3 cut(s)	412, 950, 1048
PfeI	GAWTC	5 cut(s)	197, 553, 1640, 2474, 2483
PflFI	GACNNNGTC	1 cut(s)	1001
PleI	GAGTC	1 cut(s)	2420
PpsI	GAGTC	1 cut(s)	2420
PpuMI	RGGWCCY	2 cut(s)	517, 997
PscI	ACATGT	1 cut(s)	1417
PshBI	ATTAAT	1 cut(s)	2268
PsiI	TTATAA	1 cut(s)	732
Psp5II	RGGWCCY	2 cut(s)	517, 997
Psp6I	CCWGG	2 cut(s)	813, 2284
PspEI	GGTNACC	1 cut(s)	1444
PspFI	CCCAGC	1 cut(s)	1832
PspGI	CCWGG	2 cut(s)	813, 2284
PspN4I	GGNNCC	6 cut(s)	19, 344, 518, 519, 998, 999
PspPI	GGNCC	2 cut(s)	517, 997
PspPPI	RGGWCCY	2 cut(s)	517, 997
PstI	CTGCAG	1 cut(s)	1161
PstNI	CAGNNNCTG	1 cut(s)	709
PsuI	RGATCY	2 cut(s)	17, 2129
PsyI	GACNNNGTC	1 cut(s)	1001
RsaI	GTAC	8 cut(s)	254, 344, 374, 583, 773, 1691, 1757, 2350
RsaNI	GTAC	8 cut(s)	253, 343, 373, 582, 772, 1690, 1756, 2349
RseI	CAYNNNNRTG	5 cut(s)	893, 1457, 1491, 1586, 1913
SaqAI	TTAA	6 cut(s)	663, 1968, 2060, 2117, 2123, 2268
Sau3AI	GATC	6 cut(s)	17, 1789, 1942, 2043, 2129, 2293
Sau96I	GGNCC	2 cut(s)	517, 997
SchI	GAGTC	1 cut(s)	2420
ScrFI	CCNGG	3 cut(s)	347, 815, 2286
SduI	GDGCHC	3 cut(s)	1683, 1729, 2238
SfcI	CTRYAG	3 cut(s)	1157, 1929, 2081
SfuI	TTCGAA	2 cut(s)	48, 426
SinI	GGWCC	2 cut(s)	517, 997
SmiMI	CAYNNNNRTG	5 cut(s)	893, 1457, 1491, 1586, 1913
SmlI	CTYRAG	2 cut(s)	662, 1709
SmoI	CTYRAG	2 cut(s)	662, 1709
SphI	GCATGC	1 cut(s)	1859
SspMI	CTAG	2 cut(s)	1850, 2423
StyD4I	CCNGG	3 cut(s)	345, 813, 2284
StyI	CCWWGG	2 cut(s)	317, 1473
TaaI	ACNGT	4 cut(s)	307, 1499, 2090, 2309
TaqI	TCGA	7 cut(s)	48, 426, 614, 1936, 2429, 2439, 2451
TaqII	GACCGA	1 cut(s)	893
TatI	WGTACW	4 cut(s)	252, 771, 1689, 1755
TauI	GCSGC	6 cut(s)	369, 532, 535, 540, 1958, 2369
TfiI	GAWTC	5 cut(s)	197, 553, 1640, 2474, 2483
Tru1I	TTAA	6 cut(s)	663, 1968, 2060, 2117, 2123, 2268
Tru9I	TTAA	6 cut(s)	663, 1968, 2060, 2117, 2123, 2268
TseFI	GTSAC	2 cut(s)	895, 1444
TseI	GCWGC	4 cut(s)	875, 1156, 1359, 1628
Tsp45I	GTSAC	2 cut(s)	895, 1444
Tth111I	GACNNNGTC	1 cut(s)	1001
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	517, 997
VspI	ATTAAT	1 cut(s)	2268
XagI	CCTNNNNNAGG	1 cut(s)	1542
XapI	RAATTY	3 cut(s)	1887, 2176, 2330
XceI	RCATGY	2 cut(s)	1421, 1859
XmiI	GTMKAC	2 cut(s)	1341, 2156
XspI	CTAG	2 cut(s)	1850, 2423
Zsp2I	ATGCAT	4 cut(s)	412, 950, 1807, 1861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.