FvH4_1g21340

Protein UPSTREAM OF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011027
Physical Location & Seq
Reverse (-)
13309926 .. 13312814
2889 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21340.t1

Sequence Viewer

Length: 1284 bp
ATGGATGTTCGGTTTCGAAGACCCCAAACAAGTCCAGATAGAGCCAAAGCGTGCATGCAGCAACTGCAGCCAAGAGTAGCAGTCAACAAACCCACAATCAAAAAGGTCCAAATTGTTTACTACCTCTCAAGAAATGGTCATCTTGAGCATCCTCACTACATGGAGATCACCCATTTCCCCAATCAACCTCTTCGTTTGAGAGATGTAATGGATAGGCTCACTGCTCTCAGAGGCAAAGGCATGCCCTCACTATACTCCTGGTCCTGCAAAAGGAGCTACAAGAATGGCTATGTGTGGAATGATTTATCAGAAAACGACATAATTTACCCAGCAGAAGGAGCCGAGTATGTACTCAAAGGCTCTGAGCTTGTTGAAGGCTGCTCTGAGAGATTGAACCAGATTCAAATAAGCAACCCCCAACAAATTCATCAAGACTCAAATTTTGGGTCCAAGAGAAGATCACCAATACTTGCTCCGACCTCAAACAGTAACCCCAAGTTTCATGAAGACCATGATCAATATGATGAACAAGAAGAAGAAGAAGTTGACTATGAGGACGAGAAAACAAGCTACACAAGCTCCACAACAACAAACTCTCGCTGCTCCAGAGGAGTCTCCACAGATGAACTCGAAGAACAACAACCACTGCAAACCCGCAAGCCTCCACCCCAGTCAACTCACCCCGAGTCATCTCCTCTCCCTAGTGCTTCAGCTTCCGTGTTGAACCAGTCCAACCACAGCAACAATGCGTCCATGAGGTTCGAGGATGGTGACCCAATTGTCACGAAACAGAGCTACTCTGTTTCGAAGGCAGGGCAGGGTAAGAACTCTGTTCTGCTCCAGCTCATTGCTTGCGGCAGCTCTGCTGTGGCCAAGGCCAAAAGCACACCGTGCATGAGTCAAGGGATAGTGAAGAGGGAGAGGAGTAGTCAGAGTTTTCGTAAAGAGGTGGTGTACAGGAGTGCGGTGAAGGTTGCCATAGAGGATGAGGATATGATTAATTACATGTCTGAGAATCCAAGGTTTGGGAATTTACAATCGGAGGAGAAGGAGTACTTCAGTGGCAGCATTGTGGAGTCCATGAAGGAAGATCAAAGAGTACAGCCAGCTGAGCCTGTGCTGAAAAAATCCAATTCCTATAATGAAGAAAGGAGCAAGAAAGCTGGGCTAGGAGAAGAAACAGTGGAGGAGGAAGAGAAGAAAGAGAAAGCAGCGGTGAGAGGGAATTGCATTCCTCGCAAGTTCTGTTCTGGTGGTGCATTATCAAAGCCAACCAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

428

Amino Acids

48.23

Weight (kDa)

7.57

Isoelectric Point (pI)

67.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOK PF06136 36 - 124 8.6e-48 SOSEKI protein DIX-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10150 AT5G10150 AT5G10150 AT5G10150
fragaria_vesca FvH4_1g21340 FvH4_1g21340
malus_domestica MD01G1025500.v1.1
prunus_persica Prupe.6G181200_v2.0.a1
pyrus_communis pycom01g05360 pycom01g05370
rosa_chinensis RchiOBHm_Chr2g0115201
rosa_laevigata RLG00000018165
rosa_multiflora Rmu_sc0002784.1_g000027
rosa_roxburghii Rroxscaffold_2G00130670
rosa_rugosa Rorug02G0194300
rosa_samantha Rh2AG252800 Rh2BG262400 Rh2CG257400 Rh2DG261000
rosa_wichuraiana Rw2G019720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
AccB7I CCANNNNNTGG 1 cut(s) 1025
AciI CCGC 4 cut(s) 655, 855, 965, 1214
AcoI YGGCCR 1 cut(s) 870
AcsI RAATTY 3 cut(s) 423, 439, 1030
AcuI CTGAAG 2 cut(s) 693, 1042
AdeI CACNNNGTG 1 cut(s) 891
AfaI GTAC 4 cut(s) 351, 956, 1055, 1101
AfiI CCNNNNNNNGG 3 cut(s) 270, 335, 1025
AflIII ACRYGT 1 cut(s) 1005
AgsI TTSAA 4 cut(s) 374, 394, 404, 724
AjnI CCWGG 2 cut(s) 257, 1274
Alw26I GTCTC 1 cut(s) 619
AlwNI CAGNNNCTG 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 683
AoxI GGCC 2 cut(s) 870, 876
ApeKI GCWGC 7 cut(s) 58, 67, 378, 600, 858, 1065, 1211
ApoI RAATTY 3 cut(s) 423, 439, 1030
ArsI GACNNNNNNTTYG 4 cut(s) 425, 431, 457, 463
AseI ATTAAT 1 cut(s) 999
AspS9I GGNCC 3 cut(s) 106, 261, 447
AsuHPI GGTGA 6 cut(s) 160, 453, 671, 782, 979, 1228
AsuII TTCGAA 2 cut(s) 16, 806
AvaI CYCGRG 1 cut(s) 683
AvaII GGWCC 3 cut(s) 106, 261, 447
BalI TGGCCA 1 cut(s) 872
BbsI GAAGAC 2 cut(s) 25, 513
BbvI GCAGC 7 cut(s) 70, 79, 365, 587, 870, 1077, 1223
BccI CCATC 1 cut(s) 761
BciT130I CCWGG 2 cut(s) 259, 1276
BclI TGATCA 1 cut(s) 514
BcoDI GTCTC 1 cut(s) 619
BfaI CTAG 2 cut(s) 702, 1169
BfmI CTRYAG 1 cut(s) 65
BisI GCNGC 8 cut(s) 59, 68, 379, 601, 856, 859, 1066, 1212
BlpI GCTNAGC 1 cut(s) 1110
BlsI GCNGC 8 cut(s) 60, 69, 380, 602, 857, 860, 1067, 1213
BmcAI AGTACT 1 cut(s) 1055
Bme1390I CCNGG 2 cut(s) 259, 1276
Bme18I GGWCC 3 cut(s) 106, 261, 447
BmeT110I CYCGRG 1 cut(s) 683
BmgT120I GGNCC 3 cut(s) 106, 261, 447
BmiI GGNNCC 2 cut(s) 340, 448
BmrFI CCNGG 2 cut(s) 259, 1276
BmrI ACTGGG 1 cut(s) 664
BmsI GCATC 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 664
BpiI GAAGAC 2 cut(s) 25, 513
BpmI CTGGAG 2 cut(s) 589, 824
Bpu1102I GCTNAGC 1 cut(s) 1110
Bpu14I TTCGAA 2 cut(s) 16, 806
BpuEI CTTGAG 2 cut(s) 112, 164
BsaJI CCNNGG 2 cut(s) 873, 1019
BsaXI ACNNNNNCTCC 4 cut(s) 563, 593, 1037, 1067
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 335, 1025
Bse1I ACTGG 2 cut(s) 670, 727
Bse3DI GCAATG 1 cut(s) 846
BseBI CCWGG 2 cut(s) 259, 1276
BseDI CCNNGG 2 cut(s) 873, 1019
BseGI GGATG 4 cut(s) 10, 148, 772, 991
BseLI CCNNNNNNNGG 3 cut(s) 270, 335, 1025
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 5 cut(s) 241, 354, 375, 1002, 1101
BseNI ACTGG 2 cut(s) 670, 727
BseRI GAGGAG 5 cut(s) 624, 684, 937, 1058, 1202
BseXI GCAGC 7 cut(s) 70, 79, 365, 587, 870, 1077, 1223
BseYI CCCAGC 2 cut(s) 328, 1163
BshFI GGCC 2 cut(s) 872, 878
BsiHKCI CYCGRG 1 cut(s) 683
BslI CCNNNNNNNGG 3 cut(s) 270, 335, 1025
BsmAI GTCTC 1 cut(s) 619
BsmI GAATGC 1 cut(s) 1230
BsnI GGCC 2 cut(s) 872, 878
BsoBI CYCGRG 1 cut(s) 683
Bsp119I TTCGAA 2 cut(s) 16, 806
Bsp1407I TGTACA 1 cut(s) 954
Bsp143I GATC 4 cut(s) 165, 458, 514, 1090
Bsp1720I GCTNAGC 1 cut(s) 1110
BspACI CCGC 4 cut(s) 655, 855, 965, 1214
BspANI GGCC 2 cut(s) 872, 878
BspCNI CTCAG 5 cut(s) 240, 355, 376, 1003, 1102
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 340, 448
BspMAI CTGCAG 1 cut(s) 69
BspT104I TTCGAA 2 cut(s) 16, 806
BsrDI GCAATG 1 cut(s) 846
BsrGI TGTACA 1 cut(s) 954
BsrI ACTGG 2 cut(s) 670, 727
BssECI CCNNGG 2 cut(s) 873, 1019
BssMI GATC 4 cut(s) 165, 458, 514, 1090
BssT1I CCWWGG 2 cut(s) 873, 1019
Bst2UI CCWGG 2 cut(s) 259, 1276
Bst4CI ACNGT 3 cut(s) 488, 891, 1183
Bst6I CTCTTC 3 cut(s) 195, 908, 1188
BstAPI GCANNNNNTGC 2 cut(s) 64, 891
BstAUI TGTACA 1 cut(s) 954
BstBI TTCGAA 2 cut(s) 16, 806
BstC8I GCNNGC 6 cut(s) 52, 56, 242, 659, 853, 1107
BstDEI CTNAG 5 cut(s) 227, 363, 384, 1011, 1110
BstEII GGTNACC 1 cut(s) 770
BstENI CCTNNNNNAGG 1 cut(s) 268
BstF5I GGATG 4 cut(s) 10, 148, 772, 991
BstKTI GATC 4 cut(s) 168, 461, 517, 1093
BstMAI GTCTC 1 cut(s) 619
BstMBI GATC 4 cut(s) 165, 458, 514, 1090
BstMWI GCNNNNNNNGC 8 cut(s) 64, 67, 273, 338, 576, 891, 1111, 1236
BstNI CCWGG 2 cut(s) 259, 1276
BstNSI RCATGY 3 cut(s) 58, 244, 1009
BstPI GGTNACC 1 cut(s) 770
BstSCI CCNGG 2 cut(s) 257, 1274
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 7 cut(s) 70, 79, 365, 587, 870, 1077, 1223
BstV2I GAAGAC 2 cut(s) 25, 513
BsuRI GGCC 2 cut(s) 872, 878
BtsCI GGATG 4 cut(s) 10, 148, 772, 991
BtsI GCAGTG 2 cut(s) 219, 644
BtsIMutI CAGTG 4 cut(s) 219, 644, 1066, 1188
Cac8I GCNNGC 6 cut(s) 52, 56, 242, 659, 853, 1107
CaiI CAGNNNCTG 1 cut(s) 64
CciI TCATGA 1 cut(s) 502
Cfr13I GGNCC 3 cut(s) 106, 261, 447
CseI GACGC 1 cut(s) 738
Csp6I GTAC 4 cut(s) 350, 955, 1054, 1100
CviAII CATG 9 cut(s) 55, 160, 241, 503, 512, 754, 895, 1006, 1081
CviQI GTAC 4 cut(s) 350, 955, 1054, 1100
DdeI CTNAG 5 cut(s) 227, 363, 384, 1011, 1110
DpnI GATC 4 cut(s) 167, 460, 516, 1092
DpnII GATC 4 cut(s) 165, 458, 514, 1090
DraIII CACNNNGTG 1 cut(s) 891
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
EaeI YGGCCR 1 cut(s) 870
Eam1104I CTCTTC 3 cut(s) 195, 908, 1188
EarI CTCTTC 3 cut(s) 195, 908, 1188
Eco130I CCWWGG 2 cut(s) 873, 1019
Eco47I GGWCC 3 cut(s) 106, 261, 447
Eco57I CTGAAG 2 cut(s) 693, 1042
Eco88I CYCGRG 1 cut(s) 683
Eco91I GGTNACC 1 cut(s) 770
EcoNI CCTNNNNNAGG 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 770
EcoRII CCWGG 2 cut(s) 257, 1274
EcoT14I CCWWGG 2 cut(s) 873, 1019
ErhI CCWWGG 2 cut(s) 873, 1019
FaeI CATG 9 cut(s) 58, 163, 244, 506, 515, 757, 898, 1009, 1084
FalI AAGNNNNNCTT 2 cut(s) 1040, 1072
FatI CATG 9 cut(s) 54, 159, 240, 502, 511, 753, 894, 1005, 1080
FauI CCCGC 1 cut(s) 662
FbaI TGATCA 1 cut(s) 514
Fnu4HI GCNGC 8 cut(s) 59, 68, 379, 601, 856, 859, 1066, 1212
FokI GGATG 4 cut(s) 17, 135, 779, 998
Fsp4HI GCNGC 8 cut(s) 59, 68, 379, 601, 856, 859, 1066, 1212
FspBI CTAG 2 cut(s) 702, 1169
GluI GCNGC 8 cut(s) 59, 68, 379, 601, 856, 859, 1066, 1212
GsaI CCCAGC 2 cut(s) 332, 1167
GsuI CTGGAG 2 cut(s) 589, 824
HaeIII GGCC 2 cut(s) 872, 878
HgaI GACGC 1 cut(s) 738
Hin1II CATG 9 cut(s) 58, 163, 244, 506, 515, 757, 898, 1009, 1084
HincII GTYRAC 3 cut(s) 85, 547, 675
HindII GTYRAC 3 cut(s) 85, 547, 675
HinfI GANTC 7 cut(s) 400, 434, 612, 686, 898, 1015, 1076
HphI GGTGA 6 cut(s) 160, 453, 671, 782, 979, 1228
Hpy166II GTNNAC 5 cut(s) 85, 118, 547, 675, 955
Hpy188I TCNGA 8 cut(s) 230, 310, 364, 385, 477, 933, 1012, 1042
Hpy188III TCNNGA 7 cut(s) 35, 129, 143, 431, 503, 606, 784
Hpy8I GTNNAC 5 cut(s) 85, 118, 547, 675, 955
HpyAV CCTTC 6 cut(s) 329, 368, 802, 964, 1042, 1078
HpyCH4III ACNGT 3 cut(s) 488, 891, 1183
HpyCH4V TGCA 8 cut(s) 54, 58, 67, 267, 649, 894, 1230, 1259
HpyF10VI GCNNNNNNNGC 8 cut(s) 64, 67, 273, 338, 576, 891, 1111, 1236
HpyF3I CTNAG 5 cut(s) 227, 363, 384, 1011, 1110
Hsp92II CATG 9 cut(s) 58, 163, 244, 506, 515, 757, 898, 1009, 1084
Ksp22I TGATCA 1 cut(s) 514
Kzo9I GATC 4 cut(s) 165, 458, 514, 1090
LmnI GCTCC 7 cut(s) 273, 338, 478, 584, 608, 843, 1152
Lsp1109I GCAGC 7 cut(s) 70, 79, 365, 587, 870, 1077, 1223
LweI GCATC 1 cut(s) 157
MaeI CTAG 2 cut(s) 702, 1169
MaeIII GTNAC 3 cut(s) 488, 770, 781
MalI GATC 4 cut(s) 167, 460, 516, 1092
MboI GATC 4 cut(s) 165, 458, 514, 1090
MfeI CAATTG 1 cut(s) 777
MlsI TGGCCA 1 cut(s) 872
MluCI AATT 9 cut(s) 111, 321, 423, 439, 777, 1000, 1030, 1132, 1225
MluNI TGGCCA 1 cut(s) 872
MlyI GAGTC 5 cut(s) 428, 621, 695, 907, 1085
MmeI TCCRAC 2 cut(s) 500, 756
Mox20I TGGCCA 1 cut(s) 872
MscI TGGCCA 1 cut(s) 872
MseI TTAA 1 cut(s) 999
Msp20I TGGCCA 1 cut(s) 872
MspA1I CMGCKG 2 cut(s) 1109, 1214
MspR9I CCNGG 2 cut(s) 259, 1276
MunI CAATTG 1 cut(s) 777
Mva1269I GAATGC 1 cut(s) 1230
MvaI CCWGG 2 cut(s) 259, 1276
MwoI GCNNNNNNNGC 8 cut(s) 64, 67, 273, 338, 576, 891, 1111, 1236
NdeII GATC 4 cut(s) 165, 458, 514, 1090
NlaIII CATG 9 cut(s) 58, 163, 244, 506, 515, 757, 898, 1009, 1084
NlaIV GGNNCC 2 cut(s) 340, 448
NmeAIII GCCGAG 1 cut(s) 367
NmuCI GTSAC 2 cut(s) 770, 781
NspI RCATGY 3 cut(s) 58, 244, 1009
NspV TTCGAA 2 cut(s) 16, 806
PaeI GCATGC 2 cut(s) 58, 244
PagI TCATGA 1 cut(s) 502
PciI ACATGT 1 cut(s) 1005
PctI GAATGC 1 cut(s) 1230
PfeI GAWTC 2 cut(s) 400, 1015
PflMI CCANNNNNTGG 1 cut(s) 1025
PkrI GCNGC 8 cut(s) 60, 69, 380, 602, 857, 860, 1067, 1213
PleI GAGTC 5 cut(s) 428, 620, 694, 906, 1084
PpsI GAGTC 5 cut(s) 428, 620, 694, 906, 1084
PscI ACATGT 1 cut(s) 1005
PshBI ATTAAT 1 cut(s) 999
Psp6I CCWGG 2 cut(s) 257, 1274
PspEI GGTNACC 1 cut(s) 770
PspFI CCCAGC 2 cut(s) 328, 1163
PspGI CCWGG 2 cut(s) 257, 1274
PspN4I GGNNCC 2 cut(s) 340, 448
PspPI GGNCC 3 cut(s) 106, 261, 447
PstI CTGCAG 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 1109
RsaI GTAC 4 cut(s) 351, 956, 1055, 1101
RsaNI GTAC 4 cut(s) 350, 955, 1054, 1100
SaqAI TTAA 1 cut(s) 999
SatI GCNGC 8 cut(s) 59, 68, 379, 601, 856, 859, 1066, 1212
Sau3AI GATC 4 cut(s) 165, 458, 514, 1090
Sau96I GGNCC 3 cut(s) 106, 261, 447
ScaI AGTACT 1 cut(s) 1055
SchI GAGTC 5 cut(s) 428, 621, 695, 907, 1085
ScrFI CCNGG 2 cut(s) 259, 1276
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 65
SfuI TTCGAA 2 cut(s) 16, 806
SinI GGWCC 3 cut(s) 106, 261, 447
SmlI CTYRAG 2 cut(s) 127, 143
SmoI CTYRAG 2 cut(s) 127, 143
SphI GCATGC 2 cut(s) 58, 244
Sse9I AATT 9 cut(s) 111, 321, 423, 439, 777, 1000, 1030, 1132, 1225
SsiI CCGC 4 cut(s) 655, 855, 965, 1214
SspMI CTAG 2 cut(s) 702, 1169
StyD4I CCNGG 2 cut(s) 257, 1274
StyI CCWWGG 2 cut(s) 873, 1019
TaaI ACNGT 3 cut(s) 488, 891, 1183
TaqI TCGA 4 cut(s) 16, 630, 762, 806
TasI AATT 9 cut(s) 111, 321, 423, 439, 777, 1000, 1030, 1132, 1225
TatI WGTACW 4 cut(s) 349, 954, 1053, 1099
TauI GCSGC 1 cut(s) 858
TfiI GAWTC 2 cut(s) 400, 1015
Tru1I TTAA 1 cut(s) 999
Tru9I TTAA 1 cut(s) 999
TscAI CASTG 4 cut(s) 226, 651, 1066, 1188
TseFI GTSAC 2 cut(s) 770, 781
TseI GCWGC 7 cut(s) 58, 67, 378, 600, 858, 1065, 1211
Tsp45I GTSAC 2 cut(s) 770, 781
TspDTI ATGAA 7 cut(s) 416, 491, 519, 540, 639, 1097, 1158
TspGWI ACGGA 1 cut(s) 706
TspRI CASTG 4 cut(s) 226, 651, 1066, 1188
Van91I CCANNNNNTGG 1 cut(s) 1025
VpaK11BI GGWCC 3 cut(s) 106, 261, 447
VspI ATTAAT 1 cut(s) 999
XagI CCTNNNNNAGG 1 cut(s) 268
XapI RAATTY 3 cut(s) 423, 439, 1030
XceI RCATGY 3 cut(s) 58, 244, 1009
XspI CTAG 2 cut(s) 702, 1169
ZrmI AGTACT 1 cut(s) 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.