Rmu_sc0002784.1_g000027

Protein UPSTREAM OF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002784.1
OG0011027
Physical Location & Seq
Reverse (-)
116415 .. 118399
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002784.1_g000027.1.cds

Sequence Viewer

Length: 1281 bp
atggatgttcgatttcgaagaccccaaaccagtccagatagagccaaagtgtgcatgcagcaactgcagccaagagtagcagtcaacaaacccaccatcaaaaaggtccaaattgtctactacctctcaagaaatggtcatcttgagcatcctcactacatggagatcacccatttgcccaatcaacctcttcgtttgagagatgtaatggataggctcactgctctcagaggcaagggcatgccctcactatattcctggtcctgcaaaaggagctacaagaacggttatgtgtggaatgatttagcagaaaacgacataatctacccagcagacggagctgagtatgtacttaaaggctctgagctagttgaaggctgctctgagagattgaaccagattcaaataagcagcccccaacaaattcaagactcaaattttgggtccaagaggagatcaccaccacttgctccaaccccaaacagtaaccacaagtttcatgaagaccatgatcaatatgatgaacaagaagaagaagaagttgactatgaggacgagaaaacaagctacacaagctccacaacaacaaactctcgctgctccagaggagtctccacagatgaactcgaagaacaacaacaacaacaacaaccaccgcaaacccacaagactccacccgagtcatctcctctcccaaatgcaccagcttcagtgttgaaccaacaaaaccacagcaacaatgtgtccatgaggttcgaggacggcgaccccattgttacgaaacagagctactctgtttcgaaggcagggcagggtaagaactctgttctgctccagctcattgcttgcggcagctcggccgtggctaaggccaaaagcacaccgtgcgtgagtcaagggattgtgaagagggagaggagtagtcagagttttcgtaaagaggtggtgtacaggagtgcggtgaaggttgccatagaggatgaggatatgattacttacatgtctgagaatccaaggtttgggaatttacaggcggaggagaaggagtatttcagtgggagcattgtggagtccatgaaggaagatcaaagagtacattcagctgagcctgtgctcaaaaaatccaattcctataatgaagaaaggagcaacaaagcggggctaggagaagaaacagtggaggaggaggaagagaagagagagaaagcagcagtgagaggaaattgcattcctcgcaagttctgttctactggtgcatcatcaaagccaaccaggaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

426

Amino Acids

48.2

Weight (kDa)

6.59

Isoelectric Point (pI)

66.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10150 AT5G10150 AT5G10150 AT5G10150
fragaria_vesca FvH4_1g21340 FvH4_1g21340
malus_domestica MD01G1025500.v1.1
prunus_persica Prupe.6G181200_v2.0.a1
pyrus_communis pycom01g05360 pycom01g05370
rosa_chinensis RchiOBHm_Chr2g0115201
rosa_laevigata RLG00000018165
rosa_multiflora Rmu_sc0002784.1_g000027
rosa_roxburghii Rroxscaffold_2G00130670
rosa_rugosa Rorug02G0194300
rosa_samantha Rh2AG252800 Rh2BG262400 Rh2CG257400 Rh2DG261000
rosa_wichuraiana Rw2G019720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1019
AccI GTMKAC 1 cut(s) 117
AciI CCGC 5 cut(s) 656, 849, 959, 1034, 1157
AcoI YGGCCR 1 cut(s) 858
AcsI RAATTY 3 cut(s) 423, 436, 1024
AcuI CTGAAG 1 cut(s) 693
AdeI CACNNNGTG 1 cut(s) 885
AfaI GTAC 3 cut(s) 351, 950, 1095
AfiI CCNNNNNNNGG 3 cut(s) 270, 335, 1019
AflIII ACRYGT 1 cut(s) 999
AgsI TTSAA 5 cut(s) 374, 394, 404, 428, 718
AjnI CCWGG 2 cut(s) 257, 1271
Alw21I GWGCWC 1 cut(s) 1116
Alw26I GTCTC 1 cut(s) 616
AlwNI CAGNNNCTG 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 677
AoxI GGCC 2 cut(s) 858, 870
ApeKI GCWGC 7 cut(s) 58, 67, 378, 411, 597, 852, 1208
ApoI RAATTY 3 cut(s) 423, 436, 1024
ArsI GACNNNNNNTTYG 4 cut(s) 422, 428, 454, 460
AspS9I GGNCC 3 cut(s) 106, 261, 444
AsuHPI GGTGA 3 cut(s) 160, 450, 973
AsuII TTCGAA 2 cut(s) 16, 800
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 3 cut(s) 106, 261, 444
BbsI GAAGAC 2 cut(s) 25, 510
Bbv12I GWGCWC 1 cut(s) 1116
BbvI GCAGC 7 cut(s) 70, 79, 365, 423, 584, 864, 1220
BccI CCATC 1 cut(s) 104
BceAI ACGGC 2 cut(s) 778, 845
BciT130I CCWGG 2 cut(s) 259, 1273
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 616
BfaI CTAG 2 cut(s) 368, 1163
BfmI CTRYAG 1 cut(s) 65
BisI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 850, 853, 1209
BlpI GCTNAGC 1 cut(s) 1104
BlsI GCNGC 8 cut(s) 60, 69, 380, 413, 599, 851, 854, 1210
Bme1390I CCNGG 2 cut(s) 259, 1273
Bme18I GGWCC 3 cut(s) 106, 261, 444
BmeT110I CYCGRG 1 cut(s) 677
BmgT120I GGNCC 3 cut(s) 106, 261, 444
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 2 cut(s) 259, 1273
BmsI GCATC 2 cut(s) 157, 1265
BpiI GAAGAC 2 cut(s) 25, 510
BpmI CTGGAG 2 cut(s) 586, 818
Bpu10I CCTNAGC 1 cut(s) 867
Bpu1102I GCTNAGC 1 cut(s) 1104
Bpu14I TTCGAA 2 cut(s) 16, 800
BpuEI CTTGAG 2 cut(s) 112, 164
BsaJI CCNNGG 2 cut(s) 861, 1013
BsaXI ACNNNNNCTCC 4 cut(s) 560, 590, 1031, 1061
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 335, 1019
Bse1I ACTGG 2 cut(s) 30, 1255
Bse3DI GCAATG 1 cut(s) 840
BseBI CCWGG 2 cut(s) 259, 1273
BseDI CCNNGG 2 cut(s) 861, 1013
BseGI GGATG 3 cut(s) 10, 148, 985
BseLI CCNNNNNNNGG 3 cut(s) 270, 335, 1019
BseMI GCAATG 1 cut(s) 840
BseMII CTCAG 6 cut(s) 241, 333, 354, 375, 996, 1095
BseNI ACTGG 2 cut(s) 30, 1255
BseRI GAGGAG 7 cut(s) 466, 621, 678, 931, 1052, 1196, 1199
BseX3I CGGCCG 1 cut(s) 858
BseXI GCAGC 7 cut(s) 70, 79, 365, 423, 584, 864, 1220
BseYI CCCAGC 1 cut(s) 328
Bsh1285I CGRYCG 1 cut(s) 861
BshFI GGCC 2 cut(s) 860, 872
BsiEI CGRYCG 1 cut(s) 861
BsiHKAI GWGCWC 1 cut(s) 1116
BsiHKCI CYCGRG 1 cut(s) 677
BslI CCNNNNNNNGG 3 cut(s) 270, 335, 1019
BsmAI GTCTC 1 cut(s) 616
BsmI GAATGC 1 cut(s) 1227
BsnI GGCC 2 cut(s) 860, 872
BsoBI CYCGRG 1 cut(s) 677
Bsp119I TTCGAA 2 cut(s) 16, 800
Bsp1286I GDGCHC 1 cut(s) 1116
Bsp1407I TGTACA 1 cut(s) 948
Bsp143I GATC 4 cut(s) 165, 455, 511, 1084
Bsp1720I GCTNAGC 1 cut(s) 1104
BspACI CCGC 5 cut(s) 656, 849, 959, 1034, 1157
BspANI GGCC 2 cut(s) 860, 872
BspCNI CTCAG 6 cut(s) 240, 334, 355, 376, 997, 1096
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 1 cut(s) 445
BspMAI CTGCAG 1 cut(s) 69
BspT104I TTCGAA 2 cut(s) 16, 800
BsrDI GCAATG 1 cut(s) 840
BsrGI TGTACA 1 cut(s) 948
BsrI ACTGG 2 cut(s) 30, 1255
BssECI CCNNGG 2 cut(s) 861, 1013
BssMI GATC 4 cut(s) 165, 455, 511, 1084
BssT1I CCWWGG 1 cut(s) 1013
Bst2UI CCWGG 2 cut(s) 259, 1273
Bst4CI ACNGT 4 cut(s) 287, 485, 885, 1177
Bst6I CTCTTC 4 cut(s) 195, 902, 1185, 1190
BstAPI GCANNNNNTGC 2 cut(s) 64, 885
BstAUI TGTACA 1 cut(s) 948
BstBI TTCGAA 2 cut(s) 16, 800
BstC8I GCNNGC 3 cut(s) 56, 242, 847
BstDEI CTNAG 7 cut(s) 227, 342, 363, 384, 867, 1005, 1104
BstDSI CCRYGG 1 cut(s) 861
BstENI CCTNNNNNAGG 1 cut(s) 268
BstF5I GGATG 3 cut(s) 10, 148, 985
BstKTI GATC 4 cut(s) 168, 458, 514, 1087
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 4 cut(s) 165, 455, 511, 1084
BstMCI CGRYCG 1 cut(s) 861
BstMWI GCNNNNNNNGC 7 cut(s) 64, 67, 273, 338, 573, 885, 1233
BstNI CCWGG 2 cut(s) 259, 1273
BstNSI RCATGY 3 cut(s) 58, 244, 1003
BstSCI CCNGG 2 cut(s) 257, 1271
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 7 cut(s) 70, 79, 365, 423, 584, 864, 1220
BstV2I GAAGAC 2 cut(s) 25, 510
BstZI CGGCCG 1 cut(s) 858
BsuRI GGCC 2 cut(s) 860, 872
BtgI CCRYGG 1 cut(s) 861
BtsCI GGATG 3 cut(s) 10, 148, 985
BtsI GCAGTG 2 cut(s) 219, 1218
BtsIMutI CAGTG 5 cut(s) 219, 717, 1060, 1182, 1218
Cac8I GCNNGC 3 cut(s) 56, 242, 847
CaiI CAGNNNCTG 1 cut(s) 64
CciI TCATGA 1 cut(s) 499
Cfr13I GGNCC 3 cut(s) 106, 261, 444
Csp6I GTAC 3 cut(s) 350, 949, 1094
CviAII CATG 8 cut(s) 55, 160, 241, 500, 509, 748, 1000, 1075
CviQI GTAC 3 cut(s) 350, 949, 1094
DdeI CTNAG 7 cut(s) 227, 342, 363, 384, 867, 1005, 1104
DpnI GATC 4 cut(s) 167, 457, 513, 1086
DpnII GATC 4 cut(s) 165, 455, 511, 1084
DraIII CACNNNGTG 1 cut(s) 885
EaeI YGGCCR 1 cut(s) 858
EagI CGGCCG 1 cut(s) 858
Eam1104I CTCTTC 4 cut(s) 195, 902, 1185, 1190
EarI CTCTTC 4 cut(s) 195, 902, 1185, 1190
EciI GGCGGA 1 cut(s) 1049
EclXI CGGCCG 1 cut(s) 858
Eco130I CCWWGG 1 cut(s) 1013
Eco47I GGWCC 3 cut(s) 106, 261, 444
Eco52I CGGCCG 1 cut(s) 858
Eco57I CTGAAG 1 cut(s) 693
Eco88I CYCGRG 1 cut(s) 677
EcoNI CCTNNNNNAGG 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 257, 1271
EcoT14I CCWWGG 1 cut(s) 1013
ErhI CCWWGG 1 cut(s) 1013
FaeI CATG 8 cut(s) 58, 163, 244, 503, 512, 751, 1003, 1078
FatI CATG 8 cut(s) 54, 159, 240, 499, 508, 747, 999, 1074
FauI CCCGC 1 cut(s) 1150
FbaI TGATCA 1 cut(s) 511
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 850, 853, 1209
FokI GGATG 3 cut(s) 17, 135, 992
Fsp4HI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 850, 853, 1209
FspBI CTAG 2 cut(s) 368, 1163
GluI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 850, 853, 1209
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 2 cut(s) 586, 818
HaeIII GGCC 2 cut(s) 860, 872
Hin1II CATG 8 cut(s) 58, 163, 244, 503, 512, 751, 1003, 1078
HincII GTYRAC 2 cut(s) 85, 544
HindII GTYRAC 2 cut(s) 85, 544
HinfI GANTC 8 cut(s) 400, 431, 609, 670, 680, 892, 1009, 1070
HphI GGTGA 3 cut(s) 160, 450, 973
Hpy166II GTNNAC 4 cut(s) 85, 118, 544, 949
Hpy188I TCNGA 5 cut(s) 230, 364, 385, 927, 1006
Hpy188III TCNNGA 6 cut(s) 35, 129, 143, 428, 500, 603
Hpy8I GTNNAC 4 cut(s) 85, 118, 544, 949
HpyAV CCTTC 5 cut(s) 368, 796, 958, 1036, 1072
HpyCH4III ACNGT 4 cut(s) 287, 485, 885, 1177
HpyCH4V TGCA 7 cut(s) 54, 58, 67, 267, 701, 1227, 1256
HpyF10VI GCNNNNNNNGC 7 cut(s) 64, 67, 273, 338, 573, 885, 1233
HpyF3I CTNAG 7 cut(s) 227, 342, 363, 384, 867, 1005, 1104
Hsp92II CATG 8 cut(s) 58, 163, 244, 503, 512, 751, 1003, 1078
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 4 cut(s) 165, 455, 511, 1084
LmnI GCTCC 8 cut(s) 273, 338, 475, 581, 605, 837, 1059, 1146
Lsp1109I GCAGC 7 cut(s) 70, 79, 365, 423, 584, 864, 1220
LweI GCATC 2 cut(s) 157, 1265
MaeI CTAG 2 cut(s) 368, 1163
MaeIII GTNAC 2 cut(s) 485, 775
MalI GATC 4 cut(s) 167, 457, 513, 1086
MboI GATC 4 cut(s) 165, 455, 511, 1084
MhlI GDGCHC 1 cut(s) 1116
MluCI AATT 6 cut(s) 111, 423, 436, 1024, 1126, 1222
MlyI GAGTC 6 cut(s) 425, 618, 664, 689, 901, 1079
MmeI TCCRAC 1 cut(s) 497
MseI TTAA 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 1103
MspR9I CCNGG 2 cut(s) 259, 1273
Mva1269I GAATGC 1 cut(s) 1227
MvaI CCWGG 2 cut(s) 259, 1273
MwoI GCNNNNNNNGC 7 cut(s) 64, 67, 273, 338, 573, 885, 1233
NdeII GATC 4 cut(s) 165, 455, 511, 1084
NlaIII CATG 8 cut(s) 58, 163, 244, 503, 512, 751, 1003, 1078
NlaIV GGNNCC 1 cut(s) 445
NmeAIII GCCGAG 1 cut(s) 836
NspI RCATGY 3 cut(s) 58, 244, 1003
NspV TTCGAA 2 cut(s) 16, 800
PaeI GCATGC 2 cut(s) 58, 244
PagI TCATGA 1 cut(s) 499
PciI ACATGT 1 cut(s) 999
PcsI WCGNNNNNNNCGW 1 cut(s) 762
PctI GAATGC 1 cut(s) 1227
PfeI GAWTC 2 cut(s) 400, 1009
PflMI CCANNNNNTGG 1 cut(s) 1019
PkrI GCNGC 8 cut(s) 60, 69, 380, 413, 599, 851, 854, 1210
PleI GAGTC 6 cut(s) 425, 617, 664, 688, 900, 1078
PpsI GAGTC 6 cut(s) 425, 617, 664, 688, 900, 1078
PscI ACATGT 1 cut(s) 999
Psp6I CCWGG 2 cut(s) 257, 1271
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 2 cut(s) 257, 1271
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 3 cut(s) 106, 261, 444
PstI CTGCAG 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 1103
RsaI GTAC 3 cut(s) 351, 950, 1095
RsaNI GTAC 3 cut(s) 350, 949, 1094
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 850, 853, 1209
Sau3AI GATC 4 cut(s) 165, 455, 511, 1084
Sau96I GGNCC 3 cut(s) 106, 261, 444
SchI GAGTC 6 cut(s) 425, 618, 664, 689, 901, 1079
ScrFI CCNGG 2 cut(s) 259, 1273
SduI GDGCHC 1 cut(s) 1116
SfaNI GCATC 2 cut(s) 157, 1265
SfcI CTRYAG 1 cut(s) 65
SfuI TTCGAA 2 cut(s) 16, 800
SinI GGWCC 3 cut(s) 106, 261, 444
SmlI CTYRAG 2 cut(s) 127, 143
SmoI CTYRAG 2 cut(s) 127, 143
SphI GCATGC 2 cut(s) 58, 244
Sse9I AATT 6 cut(s) 111, 423, 436, 1024, 1126, 1222
SsiI CCGC 5 cut(s) 656, 849, 959, 1034, 1157
SspMI CTAG 2 cut(s) 368, 1163
StyD4I CCNGG 2 cut(s) 257, 1271
StyI CCWWGG 1 cut(s) 1013
TaaI ACNGT 4 cut(s) 287, 485, 885, 1177
TaqI TCGA 5 cut(s) 10, 16, 627, 756, 800
TasI AATT 6 cut(s) 111, 423, 436, 1024, 1126, 1222
TatI WGTACW 3 cut(s) 349, 948, 1093
TauI GCSGC 1 cut(s) 852
TfiI GAWTC 2 cut(s) 400, 1009
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 5 cut(s) 226, 717, 1060, 1182, 1218
TseI GCWGC 7 cut(s) 58, 67, 378, 411, 597, 852, 1208
TspDTI ATGAA 6 cut(s) 488, 516, 537, 636, 1091, 1152
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 5 cut(s) 226, 717, 1060, 1182, 1218
Van91I CCANNNNNTGG 1 cut(s) 1019
VpaK11BI GGWCC 3 cut(s) 106, 261, 444
XagI CCTNNNNNAGG 1 cut(s) 268
XapI RAATTY 3 cut(s) 423, 436, 1024
XceI RCATGY 3 cut(s) 58, 244, 1003
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 2 cut(s) 368, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.