Prupe.6G181200_v2.0.a1

Protein UPSTREAM OF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011027
Physical Location & Seq
Forward (+)
18808451 .. 18810768
2318 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G181200.1

Sequence Viewer

Length: 1317 bp
ATGGATGTTCGTTTTAGAAGACCCACCAGAGAAACCAGCCCAGACAGAGCCAAAGCTTGCAGCATGCAGATGCAGATGCAGCCAAGACTCAACAACAAACCCATCAAAAAACACCAAGTCGTCTACTATCTTTCAAGAAATGGCCATCTTGAGCATCCCCATTACATGGAAATCACCCATTTGGCCAACCGGCCACTTCGTTTGAGAGATGCAATGGAACGGCTCACGGCTCTTAGAGGCAAAGGCATGCCCTCACTATATTCTTGGTCCTGCAAAAGGAGCTACAAGAATGGTTACGTGTGGAACGATTTAGCTGAAAACGATACAATCTATCCAGCAGAAGGTGCTGAATATGTACTCAAAGGATCAGAACTACTTGAAGGCTGCTCTGCAGAAAGATTAGATCAGCTTCAGATAAGCAGCAGCCAACAGATACAAGACACAAATTTTGAGTCCAAGAGAAGATCACCACTTGCTCCAACCCGAAACAGAAGAGAACACGATCATCAACAAGCAGAGAATAAGTACCTCATCACCAAGTATCCTCATCATGATCATGATCCAGACCAAGACTACGATGAACAAGAAGAAGAAGAAGACTATGAGGATGAGAAGACAAGCTACACCAGCTCCACCACACCCCACTCTCGCTGCTCCAGAGGGGTTTCCACCACAGACGAACTCGAAGAGCCTCCACAAACCCGCAAAACCCCAACTGAGTCAACTCACCCCGAGCCATCTCCTCCTCCAAACCCATCAATTATATTATCAAATCAACCCAACCAAACCACCAGTCTCTCGGAAAGGTTCGAGGACGGCGAGCCAGTTGCTGTTTCCACCTCCAAGTCTTCAGCACAGAGCAGGAACTCTGTTCTGCTTCAGCTCATAGCATGTGGAAGCTCTGCTGTGGCCAAAGCGAAGAACGCGCCTTGTGTGAAGCAGCACACAGTTTATAATTCACCATTTGAGAGGAAGAGCAGCGAGAGCTTTCGAAAAGAGGTTGTGTACAAGGCTGCTGTGAAGGTGGCGGCTGAAGAGGACATGATCAATTACATGTCTGAGAATCCAAGGTTTGGGAATTTGCAGGCAGAGGAGAAAGAGTATTTTAGTGGGAGTATTGTTGAGAGTATCAAGGAAGATCGAATTTCAGCCGAGCGTGCGCTCAAAAGATCGAATTCTTACAATGAAGAAAGGAGCACTAAGGCTGGGTTAGCGGCCGAAACAGTAGAGGAAGAGAAGAGAGAGAAGGCAGGTGTGAAAGGAAAGTGCATTCCTCGTAAACTATCTTCTGCTGTATCAAAACAAACCAGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

439

Amino Acids

49.92

Weight (kDa)

7.21

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10150 AT5G10150 AT5G10150 AT5G10150
fragaria_vesca FvH4_1g21340 FvH4_1g21340
malus_domestica MD01G1025500.v1.1
prunus_persica Prupe.6G181200_v2.0.a1
pyrus_communis pycom01g05360 pycom01g05370
rosa_chinensis RchiOBHm_Chr2g0115201
rosa_laevigata RLG00000018165
rosa_multiflora Rmu_sc0002784.1_g000027
rosa_roxburghii Rroxscaffold_2G00130670
rosa_rugosa Rorug02G0194300
rosa_samantha Rh2AG252800 Rh2BG262400 Rh2CG257400 Rh2DG261000
rosa_wichuraiana Rw2G019720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 954
AarI CACCTGC 1 cut(s) 1241
Acc36I ACCTGC 1 cut(s) 1241
AccB7I CCANNNNNTGG 2 cut(s) 166, 1073
AccI GTMKAC 1 cut(s) 123
AccII CGCG 1 cut(s) 926
AciI CCGC 3 cut(s) 703, 1028, 1214
AclWI GGATC 2 cut(s) 373, 554
AcoI YGGCCR 5 cut(s) 142, 183, 191, 909, 1215
AcsI RAATTY 4 cut(s) 445, 1078, 1143, 1174
AcuI CTGAAG 4 cut(s) 395, 834, 863, 1053
AfaI GTAC 3 cut(s) 357, 527, 1007
AfiI CCNNNNNNNGG 4 cut(s) 166, 276, 341, 1073
AflIII ACRYGT 2 cut(s) 297, 1053
AgsI TTSAA 2 cut(s) 135, 380
AjnI CCWGG 1 cut(s) 1307
AluBI AGCT 9 cut(s) 56, 282, 314, 409, 621, 630, 883, 900, 987
AluI AGCT 9 cut(s) 56, 282, 314, 409, 621, 630, 883, 900, 987
Alw21I GWGCWC 1 cut(s) 1199
Alw26I GTCTC 1 cut(s) 800
AlwI GGATC 2 cut(s) 373, 554
AlwNI CAGNNNCTG 1 cut(s) 830
Ama87I CYCGRG 1 cut(s) 731
AoxI GGCC 5 cut(s) 142, 183, 191, 909, 1215
ApeKI GCWGC 9 cut(s) 60, 79, 384, 420, 423, 651, 940, 978, 1013
ApoI RAATTY 4 cut(s) 445, 1078, 1143, 1174
ArsI GACNNNNNNTTYG 6 cut(s) 431, 437, 463, 469, 778, 810
AspLEI GCGC 2 cut(s) 928, 1162
AspS9I GGNCC 1 cut(s) 267
AsuHPI GGTGA 5 cut(s) 166, 459, 526, 719, 951
AsuII TTCGAA 1 cut(s) 991
AvaI CYCGRG 1 cut(s) 731
AvaII GGWCC 1 cut(s) 267
BalI TGGCCA 3 cut(s) 144, 185, 911
BarI GAAGNNNNNNTAC 4 cut(s) 605, 637, 1270, 1302
BbsI GAAGAC 4 cut(s) 25, 603, 620, 840
Bbv12I GWGCWC 1 cut(s) 1199
BbvI GCAGC 9 cut(s) 72, 91, 371, 432, 435, 638, 952, 990, 1000
BccI CCATC 4 cut(s) 110, 153, 745, 763
BceAI ACGGC 3 cut(s) 236, 243, 832
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 1 cut(s) 1309
BciVI GTATCC 1 cut(s) 552
BclI TGATCA 2 cut(s) 553, 1044
BcoDI GTCTC 1 cut(s) 800
BfmI CTRYAG 1 cut(s) 390
BfuAI ACCTGC 1 cut(s) 1241
BfuI GTATCC 1 cut(s) 552
Bme1390I CCNGG 1 cut(s) 1309
Bme18I GGWCC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 731
BmgT120I GGNCC 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 1309
BmsI GCATC 4 cut(s) 60, 66, 163, 199
BpiI GAAGAC 4 cut(s) 25, 603, 620, 840
BpmI CTGGAG 1 cut(s) 640
Bpu14I TTCGAA 1 cut(s) 991
BpuEI CTTGAG 1 cut(s) 170
BsaAI YACGTR 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 1 cut(s) 1067
BsaXI ACNNNNNCTCC 4 cut(s) 614, 644, 1085, 1115
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 276, 341, 1073
Bse118I RCCGGY 1 cut(s) 189
Bse1I ACTGG 2 cut(s) 792, 824
Bse3DI GCAATG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 1 cut(s) 1309
BseDI CCNNGG 1 cut(s) 1067
BseGI GGATG 3 cut(s) 10, 154, 613
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 4 cut(s) 166, 276, 341, 1073
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 2 cut(s) 708, 1050
BseNI ACTGG 2 cut(s) 792, 824
BseRI GAGGAG 3 cut(s) 732, 735, 1106
BseX3I CGGCCG 1 cut(s) 1215
BseXI GCAGC 9 cut(s) 72, 91, 371, 432, 435, 638, 952, 990, 1000
BseYI CCCAGC 1 cut(s) 1205
Bsh1236I CGCG 1 cut(s) 926
Bsh1285I CGRYCG 1 cut(s) 1218
BshFI GGCC 5 cut(s) 144, 185, 193, 911, 1217
BsiEI CGRYCG 1 cut(s) 1218
BsiHKAI GWGCWC 1 cut(s) 1199
BsiHKCI CYCGRG 1 cut(s) 731
BsiSI CCGG 1 cut(s) 190
BslI CCNNNNNNNGG 4 cut(s) 166, 276, 341, 1073
BsmAI GTCTC 1 cut(s) 800
BsmI GAATGC 1 cut(s) 1269
BsnI GGCC 5 cut(s) 144, 185, 193, 911, 1217
BsoBI CYCGRG 1 cut(s) 731
Bsp119I TTCGAA 1 cut(s) 991
Bsp1286I GDGCHC 1 cut(s) 1199
Bsp1407I TGTACA 1 cut(s) 1005
Bsp143I GATC 9 cut(s) 365, 403, 464, 502, 553, 559, 1044, 1138, 1169
BspACI CCGC 3 cut(s) 703, 1028, 1214
BspANI GGCC 5 cut(s) 144, 185, 193, 911, 1217
BspCNI CTCAG 2 cut(s) 709, 1051
BspFNI CGCG 1 cut(s) 926
BspHI TCATGA 2 cut(s) 550, 556
BspMAI CTGCAG 1 cut(s) 394
BspMI ACCTGC 1 cut(s) 1241
BspPI GGATC 2 cut(s) 373, 554
BspQI GCTCTTC 2 cut(s) 681, 968
BspT104I TTCGAA 1 cut(s) 991
BsrDI GCAATG 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 189
BsrGI TGTACA 1 cut(s) 1005
BsrI ACTGG 2 cut(s) 792, 824
BssAI RCCGGY 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 1067
BssMI GATC 9 cut(s) 365, 403, 464, 502, 553, 559, 1044, 1138, 1169
BssT1I CCWWGG 1 cut(s) 1067
Bst2UI CCWGG 1 cut(s) 1309
Bst4CI ACNGT 2 cut(s) 949, 1225
Bst6I CTCTTC 6 cut(s) 487, 681, 968, 1029, 1227, 1232
BstAPI GCANNNNNTGC 1 cut(s) 344
BstAUI TGTACA 1 cut(s) 1005
BstBAI YACGTR 1 cut(s) 298
BstBI TTCGAA 1 cut(s) 991
BstC8I GCNNGC 6 cut(s) 58, 65, 248, 821, 1086, 1158
BstDEI CTNAG 4 cut(s) 233, 717, 1059, 1200
BstENI CCTNNNNNAGG 1 cut(s) 274
BstF5I GGATG 3 cut(s) 10, 154, 613
BstFNI CGCG 1 cut(s) 926
BstHHI GCGC 2 cut(s) 928, 1162
BstKTI GATC 9 cut(s) 368, 406, 467, 505, 556, 562, 1047, 1141, 1172
BstMAI GTCTC 1 cut(s) 800
BstMBI GATC 9 cut(s) 365, 403, 464, 502, 553, 559, 1044, 1138, 1169
BstMCI CGRYCG 1 cut(s) 1218
BstMWI GCNNNNNNNGC 8 cut(s) 79, 279, 344, 627, 923, 984, 1157, 1211
BstNI CCWGG 1 cut(s) 1309
BstNSI RCATGY 4 cut(s) 67, 250, 894, 1057
BstSCI CCNGG 1 cut(s) 1307
BstSFI CTRYAG 1 cut(s) 390
BstUI CGCG 1 cut(s) 926
BstV1I GCAGC 9 cut(s) 72, 91, 371, 432, 435, 638, 952, 990, 1000
BstV2I GAAGAC 4 cut(s) 25, 603, 620, 840
BstZI CGGCCG 1 cut(s) 1215
BsuI GTATCC 1 cut(s) 552
BsuRI GGCC 5 cut(s) 144, 185, 193, 911, 1217
BtsCI GGATG 3 cut(s) 10, 154, 613
BveI ACCTGC 1 cut(s) 1241
Cac8I GCNNGC 6 cut(s) 58, 65, 248, 821, 1086, 1158
CaiI CAGNNNCTG 1 cut(s) 830
CciI TCATGA 2 cut(s) 550, 556
CfoI GCGC 2 cut(s) 928, 1162
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 267
Csp6I GTAC 3 cut(s) 356, 526, 1006
CspCI CAANNNNNGTGG 2 cut(s) 183, 218
CviAII CATG 8 cut(s) 64, 166, 247, 551, 557, 891, 1042, 1054
CviQI GTAC 3 cut(s) 356, 526, 1006
DdeI CTNAG 4 cut(s) 233, 717, 1059, 1200
DpnI GATC 9 cut(s) 367, 405, 466, 504, 555, 561, 1046, 1140, 1171
DpnII GATC 9 cut(s) 365, 403, 464, 502, 553, 559, 1044, 1138, 1169
EaeI YGGCCR 5 cut(s) 142, 183, 191, 909, 1215
EagI CGGCCG 1 cut(s) 1215
Eam1104I CTCTTC 6 cut(s) 487, 681, 968, 1029, 1227, 1232
EarI CTCTTC 6 cut(s) 487, 681, 968, 1029, 1227, 1232
EclXI CGGCCG 1 cut(s) 1215
Eco130I CCWWGG 1 cut(s) 1067
Eco47I GGWCC 1 cut(s) 267
Eco52I CGGCCG 1 cut(s) 1215
Eco57I CTGAAG 4 cut(s) 395, 834, 863, 1053
Eco88I CYCGRG 1 cut(s) 731
EcoNI CCTNNNNNAGG 1 cut(s) 274
EcoRI GAATTC 1 cut(s) 1174
EcoRII CCWGG 1 cut(s) 1307
EcoT14I CCWWGG 1 cut(s) 1067
ErhI CCWWGG 1 cut(s) 1067
FaeI CATG 8 cut(s) 67, 169, 250, 554, 560, 894, 1045, 1057
FatI CATG 8 cut(s) 63, 165, 246, 550, 556, 890, 1041, 1053
FauI CCCGC 1 cut(s) 710
FbaI TGATCA 2 cut(s) 553, 1044
FblI GTMKAC 1 cut(s) 123
FokI GGATG 3 cut(s) 17, 141, 620
GlaI GCGC 2 cut(s) 927, 1161
GsaI CCCAGC 1 cut(s) 1209
GsuI CTGGAG 1 cut(s) 640
HaeIII GGCC 5 cut(s) 144, 185, 193, 911, 1217
HapII CCGG 1 cut(s) 190
HhaI GCGC 2 cut(s) 928, 1162
Hin1II CATG 8 cut(s) 67, 169, 250, 554, 560, 894, 1045, 1057
Hin6I GCGC 2 cut(s) 926, 1160
HinP1I GCGC 2 cut(s) 926, 1160
HincII GTYRAC 1 cut(s) 723
HindII GTYRAC 1 cut(s) 723
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 4 cut(s) 87, 452, 719, 1063
HpaII CCGG 1 cut(s) 190
HphI GGTGA 5 cut(s) 166, 459, 526, 719, 951
Hpy166II GTNNAC 4 cut(s) 124, 723, 1006, 1280
Hpy188I TCNGA 4 cut(s) 370, 414, 802, 1060
Hpy188III TCNNGA 6 cut(s) 135, 149, 551, 557, 563, 657
Hpy8I GTNNAC 4 cut(s) 124, 723, 1006, 1280
HpyAV CCTTC 4 cut(s) 335, 374, 1015, 1240
HpyCH4III ACNGT 2 cut(s) 949, 1225
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 9 cut(s) 60, 67, 73, 79, 212, 273, 392, 1084, 1269
HpyF10VI GCNNNNNNNGC 8 cut(s) 79, 279, 344, 627, 923, 984, 1157, 1211
HpyF3I CTNAG 4 cut(s) 233, 717, 1059, 1200
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 8 cut(s) 67, 169, 250, 554, 560, 894, 1045, 1057
HspAI GCGC 2 cut(s) 926, 1160
Ksp22I TGATCA 2 cut(s) 553, 1044
Kzo9I GATC 9 cut(s) 365, 403, 464, 502, 553, 559, 1044, 1138, 1169
LguI GCTCTTC 2 cut(s) 681, 968
LmnI GCTCC 5 cut(s) 279, 481, 635, 659, 1194
Lsp1109I GCAGC 9 cut(s) 72, 91, 371, 432, 435, 638, 952, 990, 1000
LweI GCATC 4 cut(s) 60, 66, 163, 199
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 293
MalI GATC 9 cut(s) 367, 405, 466, 504, 555, 561, 1046, 1140, 1171
MboI GATC 9 cut(s) 365, 403, 464, 502, 553, 559, 1044, 1138, 1169
MhlI GDGCHC 1 cut(s) 1199
MlsI TGGCCA 3 cut(s) 144, 185, 911
MluCI AATT 7 cut(s) 445, 759, 955, 1048, 1078, 1143, 1174
MluNI TGGCCA 3 cut(s) 144, 185, 911
MlyI GAGTC 3 cut(s) 81, 461, 728
MmeI TCCRAC 1 cut(s) 503
Mox20I TGGCCA 3 cut(s) 144, 185, 911
MscI TGGCCA 3 cut(s) 144, 185, 911
MslI CAYNNNNRTG 2 cut(s) 68, 555
Msp20I TGGCCA 3 cut(s) 144, 185, 911
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 1309
Mva1269I GAATGC 1 cut(s) 1269
MvaI CCWGG 1 cut(s) 1309
MvnI CGCG 1 cut(s) 926
MwoI GCNNNNNNNGC 8 cut(s) 79, 279, 344, 627, 923, 984, 1157, 1211
NdeII GATC 9 cut(s) 365, 403, 464, 502, 553, 559, 1044, 1138, 1169
NlaIII CATG 8 cut(s) 67, 169, 250, 554, 560, 894, 1045, 1057
NmeAIII GCCGAG 1 cut(s) 1177
NspI RCATGY 4 cut(s) 67, 250, 894, 1057
NspV TTCGAA 1 cut(s) 991
PaeI GCATGC 2 cut(s) 67, 250
PagI TCATGA 2 cut(s) 550, 556
PaqCI CACCTGC 1 cut(s) 1241
PciI ACATGT 1 cut(s) 1053
PciSI GCTCTTC 2 cut(s) 681, 968
PcsI WCGNNNNNNNCGW 2 cut(s) 303, 816
PctI GAATGC 1 cut(s) 1269
PfeI GAWTC 1 cut(s) 1063
PflMI CCANNNNNTGG 2 cut(s) 166, 1073
PleI GAGTC 3 cut(s) 81, 460, 727
PpsI GAGTC 3 cut(s) 81, 460, 727
Ppu21I YACGTR 1 cut(s) 298
PscI ACATGT 1 cut(s) 1053
PsiI TTATAA 1 cut(s) 954
Psp6I CCWGG 1 cut(s) 1307
PspFI CCCAGC 1 cut(s) 1205
PspGI CCWGG 1 cut(s) 1307
PspPI GGNCC 1 cut(s) 267
PstI CTGCAG 1 cut(s) 394
PstNI CAGNNNCTG 1 cut(s) 830
RsaI GTAC 3 cut(s) 357, 527, 1007
RsaNI GTAC 3 cut(s) 356, 526, 1006
RseI CAYNNNNRTG 2 cut(s) 68, 555
SapI GCTCTTC 2 cut(s) 681, 968
Sau3AI GATC 9 cut(s) 365, 403, 464, 502, 553, 559, 1044, 1138, 1169
Sau96I GGNCC 1 cut(s) 267
SchI GAGTC 3 cut(s) 81, 461, 728
ScrFI CCNGG 1 cut(s) 1309
SduI GDGCHC 1 cut(s) 1199
SfaNI GCATC 4 cut(s) 60, 66, 163, 199
SfcI CTRYAG 1 cut(s) 390
SfuI TTCGAA 1 cut(s) 991
SinI GGWCC 1 cut(s) 267
SmiMI CAYNNNNRTG 2 cut(s) 68, 555
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SphI GCATGC 2 cut(s) 67, 250
Sse9I AATT 7 cut(s) 445, 759, 955, 1048, 1078, 1143, 1174
SsiI CCGC 3 cut(s) 703, 1028, 1214
StyD4I CCNGG 1 cut(s) 1307
StyI CCWWGG 1 cut(s) 1067
TaaI ACNGT 2 cut(s) 949, 1225
TaiI ACGT 1 cut(s) 300
TaqI TCGA 5 cut(s) 684, 810, 991, 1141, 1172
TasI AATT 7 cut(s) 445, 759, 955, 1048, 1078, 1143, 1174
TatI WGTACW 2 cut(s) 355, 1005
TauI GCSGC 2 cut(s) 1031, 1217
TfiI GAWTC 1 cut(s) 1063
TseI GCWGC 9 cut(s) 60, 79, 384, 420, 423, 651, 940, 978, 1013
TspDTI ATGAA 2 cut(s) 594, 1200
Van91I CCANNNNNTGG 2 cut(s) 166, 1073
VpaK11BI GGWCC 1 cut(s) 267
XagI CCTNNNNNAGG 1 cut(s) 274
XapI RAATTY 4 cut(s) 445, 1078, 1143, 1174
XceI RCATGY 4 cut(s) 67, 250, 894, 1057
XmiI GTMKAC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.