Rw2G019720

Protein UPSTREAM OF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011027
Physical Location & Seq
Reverse (-)
26421640 .. 26423802
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G019720.1

Sequence Viewer

Length: 1272 bp
ATGGATGTTCGATTTCGAAGACCCCAAACCAGTCCAGATAGAGCCAAAGTGTGCATGCAGCAACTGCAGCCAAGAGTAGCAGTCAACAAACCCACCATCAAAAAGGTCCAAATTGTCTACTACCTCTCAAGAAATGGTCATCTTGAGCATCCTCACTACATGGAGATCACCCATTTGCCCAATCAACCTCTTCGTTTGAGAGATGTAATGGATAGGCTCACTGCTCTCAGAGGCAAGGGCATGCCCTCACTATATTCCTGGTCCTGCAAAAGGAGCTACAAGAACGGTTATGTGTGGAATGATTTAGCAGAAAACGACATAATCTACCCAGCAGACGGAGCTGAGTATGTACTTAAAGGCTCTGAGCTAGTTGAAGGCTGCTCTGAGAGATTGAACCAGATTCAAATAAGCAGCCCCCAACAAATTCAAGACTCAAATTTTGGGTCCAAGAGGAGATCACCACCACTTGCTCCAACCCCAAACAGTAACCACAAGTTTCATGAAGACCATGATCAATATGATGAACAAGAAGAAGAAGAAGTTGACTATGAGGACGAGAAAACAAGCTACACAAGCTCCACAACAACAAACTCTCGCTGCTCCAGAGGAGTCTCCACAGATGAACTCGAAGAACAACAACAACCACCGCAAACCCACAAGACTCCCCCCGAGTCATCTCCTCTCCCAAATGCACCAGCTTCTGTGTTGAACCAACAAAACCACAGCAACAATGTGTCCATGAGGTTCGAGGACGGCGACCCCATTGTTACGAAACAGAGCTACTCTGTTTCGAAGGCAGGGCAGGGTAAGAACTCTGTTCTACTCCAGCTCATTGCTTGCGGCAGCTCGGCCGTGGCTAAGGCCAAAAGCACACCGTGCGTGAATCAAGGGATTGTGAAGAGGGAGAGGAGTAGTCAGAGTTTTCGTAAAGAGGTGGTGTACAGGAGTGCGGTGAAGGTTGCCATAGAGGATGAGGATATGATTACTTACATGTCTGAGAATCCGAGGTTTGGGAATTTACAGGCGGAGGAGAAGGAGTATTTCAGTGGGAGCATTGTGGAGTCCATGAAGGAAGATCAAAGAGTACATTCAGCTGAGCCTGTGCTCAAAAAATCCAATTCCTATAATGAAGAAAGGAGCAACAAAGCGGGGCTAGGAGAAGAAACAGTGGAGGAGGAGGAAGAGAAGAGAGAGAAAGCAGCAGTGAGAGGAAATTGCATTCCTCGCAAGTTCTGTTCTACTGGTGCATCATCAAAGCCAACCAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

423

Amino Acids

47.84

Weight (kDa)

6.59

Isoelectric Point (pI)

64.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOK PF06136 36 - 124 9.7e-48 SOSEKI protein DIX-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10150 AT5G10150 AT5G10150 AT5G10150
fragaria_vesca FvH4_1g21340 FvH4_1g21340
malus_domestica MD01G1025500.v1.1
prunus_persica Prupe.6G181200_v2.0.a1
pyrus_communis pycom01g05360 pycom01g05370
rosa_chinensis RchiOBHm_Chr2g0115201
rosa_laevigata RLG00000018165
rosa_multiflora Rmu_sc0002784.1_g000027
rosa_roxburghii Rroxscaffold_2G00130670
rosa_rugosa Rorug02G0194300
rosa_samantha Rh2AG252800 Rh2BG262400 Rh2CG257400 Rh2DG261000
rosa_wichuraiana Rw2G019720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 117
AciI CCGC 5 cut(s) 647, 840, 950, 1025, 1148
AcoI YGGCCR 1 cut(s) 849
AcsI RAATTY 3 cut(s) 423, 436, 1015
AdeI CACNNNGTG 1 cut(s) 876
AfaI GTAC 3 cut(s) 351, 941, 1086
AfiI CCNNNNNNNGG 3 cut(s) 270, 335, 1010
AflIII ACRYGT 1 cut(s) 990
AgsI TTSAA 5 cut(s) 374, 394, 404, 428, 709
AjnI CCWGG 2 cut(s) 257, 1262
Alw21I GWGCWC 1 cut(s) 1107
Alw26I GTCTC 1 cut(s) 616
AlwNI CAGNNNCTG 2 cut(s) 64, 701
Ama87I CYCGRG 1 cut(s) 668
AoxI GGCC 2 cut(s) 849, 861
ApeKI GCWGC 7 cut(s) 58, 67, 378, 411, 597, 843, 1199
ApoI RAATTY 3 cut(s) 423, 436, 1015
ArsI GACNNNNNNTTYG 4 cut(s) 422, 428, 454, 460
AspS9I GGNCC 3 cut(s) 106, 261, 444
AsuHPI GGTGA 3 cut(s) 160, 450, 964
AsuII TTCGAA 2 cut(s) 16, 791
AvaI CYCGRG 1 cut(s) 668
AvaII GGWCC 3 cut(s) 106, 261, 444
BbsI GAAGAC 2 cut(s) 25, 510
Bbv12I GWGCWC 1 cut(s) 1107
BbvI GCAGC 7 cut(s) 70, 79, 365, 423, 584, 855, 1211
BccI CCATC 1 cut(s) 104
BceAI ACGGC 2 cut(s) 769, 836
BciT130I CCWGG 2 cut(s) 259, 1264
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 616
BfaI CTAG 2 cut(s) 368, 1154
BfmI CTRYAG 1 cut(s) 65
BisI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 841, 844, 1200
BlpI GCTNAGC 1 cut(s) 1095
BlsI GCNGC 8 cut(s) 60, 69, 380, 413, 599, 842, 845, 1201
Bme1390I CCNGG 2 cut(s) 259, 1264
Bme18I GGWCC 3 cut(s) 106, 261, 444
BmeT110I CYCGRG 1 cut(s) 668
BmgT120I GGNCC 3 cut(s) 106, 261, 444
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 2 cut(s) 259, 1264
BmsI GCATC 2 cut(s) 157, 1256
BpiI GAAGAC 2 cut(s) 25, 510
BpmI CTGGAG 2 cut(s) 586, 809
Bpu10I CCTNAGC 1 cut(s) 858
Bpu1102I GCTNAGC 1 cut(s) 1095
Bpu14I TTCGAA 2 cut(s) 16, 791
BpuEI CTTGAG 2 cut(s) 112, 164
BsaJI CCNNGG 2 cut(s) 852, 1004
BsaXI ACNNNNNCTCC 4 cut(s) 560, 590, 1022, 1052
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 335, 1010
Bse1I ACTGG 2 cut(s) 30, 1246
Bse3DI GCAATG 1 cut(s) 831
BseBI CCWGG 2 cut(s) 259, 1264
BseDI CCNNGG 2 cut(s) 852, 1004
BseGI GGATG 3 cut(s) 10, 148, 976
BseLI CCNNNNNNNGG 3 cut(s) 270, 335, 1010
BseMI GCAATG 1 cut(s) 831
BseMII CTCAG 6 cut(s) 241, 333, 354, 375, 987, 1086
BseNI ACTGG 2 cut(s) 30, 1246
BseRI GAGGAG 7 cut(s) 466, 621, 669, 922, 1043, 1187, 1190
BseX3I CGGCCG 1 cut(s) 849
BseXI GCAGC 7 cut(s) 70, 79, 365, 423, 584, 855, 1211
BseYI CCCAGC 1 cut(s) 328
Bsh1285I CGRYCG 1 cut(s) 852
BshFI GGCC 2 cut(s) 851, 863
BsiEI CGRYCG 1 cut(s) 852
BsiHKAI GWGCWC 1 cut(s) 1107
BsiHKCI CYCGRG 1 cut(s) 668
BslI CCNNNNNNNGG 3 cut(s) 270, 335, 1010
BsmAI GTCTC 1 cut(s) 616
BsmI GAATGC 1 cut(s) 1218
BsnI GGCC 2 cut(s) 851, 863
BsoBI CYCGRG 1 cut(s) 668
Bsp119I TTCGAA 2 cut(s) 16, 791
Bsp1286I GDGCHC 1 cut(s) 1107
Bsp1407I TGTACA 1 cut(s) 939
Bsp143I GATC 4 cut(s) 165, 455, 511, 1075
Bsp1720I GCTNAGC 1 cut(s) 1095
BspACI CCGC 5 cut(s) 647, 840, 950, 1025, 1148
BspANI GGCC 2 cut(s) 851, 863
BspCNI CTCAG 6 cut(s) 240, 334, 355, 376, 988, 1087
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 1 cut(s) 445
BspMAI CTGCAG 1 cut(s) 69
BspT104I TTCGAA 2 cut(s) 16, 791
BsrDI GCAATG 1 cut(s) 831
BsrGI TGTACA 1 cut(s) 939
BsrI ACTGG 2 cut(s) 30, 1246
BssECI CCNNGG 2 cut(s) 852, 1004
BssMI GATC 4 cut(s) 165, 455, 511, 1075
Bst2UI CCWGG 2 cut(s) 259, 1264
Bst4CI ACNGT 4 cut(s) 287, 485, 876, 1168
Bst6I CTCTTC 4 cut(s) 195, 893, 1176, 1181
BstAPI GCANNNNNTGC 2 cut(s) 64, 876
BstAUI TGTACA 1 cut(s) 939
BstBI TTCGAA 2 cut(s) 16, 791
BstC8I GCNNGC 3 cut(s) 56, 242, 838
BstDEI CTNAG 7 cut(s) 227, 342, 363, 384, 858, 996, 1095
BstDSI CCRYGG 1 cut(s) 852
BstENI CCTNNNNNAGG 1 cut(s) 268
BstF5I GGATG 3 cut(s) 10, 148, 976
BstKTI GATC 4 cut(s) 168, 458, 514, 1078
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 4 cut(s) 165, 455, 511, 1075
BstMCI CGRYCG 1 cut(s) 852
BstMWI GCNNNNNNNGC 7 cut(s) 64, 67, 273, 338, 573, 876, 1224
BstNI CCWGG 2 cut(s) 259, 1264
BstNSI RCATGY 3 cut(s) 58, 244, 994
BstSCI CCNGG 2 cut(s) 257, 1262
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 7 cut(s) 70, 79, 365, 423, 584, 855, 1211
BstV2I GAAGAC 2 cut(s) 25, 510
BstZI CGGCCG 1 cut(s) 849
BsuRI GGCC 2 cut(s) 851, 863
BtgI CCRYGG 1 cut(s) 852
BtsCI GGATG 3 cut(s) 10, 148, 976
BtsI GCAGTG 2 cut(s) 219, 1209
BtsIMutI CAGTG 4 cut(s) 219, 1051, 1173, 1209
Cac8I GCNNGC 3 cut(s) 56, 242, 838
CaiI CAGNNNCTG 2 cut(s) 64, 701
CciI TCATGA 1 cut(s) 499
Cfr13I GGNCC 3 cut(s) 106, 261, 444
Csp6I GTAC 3 cut(s) 350, 940, 1085
CviAII CATG 8 cut(s) 55, 160, 241, 500, 509, 739, 991, 1066
CviQI GTAC 3 cut(s) 350, 940, 1085
DdeI CTNAG 7 cut(s) 227, 342, 363, 384, 858, 996, 1095
DpnI GATC 4 cut(s) 167, 457, 513, 1077
DpnII GATC 4 cut(s) 165, 455, 511, 1075
DraIII CACNNNGTG 1 cut(s) 876
EaeI YGGCCR 1 cut(s) 849
EagI CGGCCG 1 cut(s) 849
Eam1104I CTCTTC 4 cut(s) 195, 893, 1176, 1181
EarI CTCTTC 4 cut(s) 195, 893, 1176, 1181
EciI GGCGGA 1 cut(s) 1040
EclXI CGGCCG 1 cut(s) 849
Eco47I GGWCC 3 cut(s) 106, 261, 444
Eco52I CGGCCG 1 cut(s) 849
Eco88I CYCGRG 1 cut(s) 668
EcoNI CCTNNNNNAGG 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 257, 1262
FaeI CATG 8 cut(s) 58, 163, 244, 503, 512, 742, 994, 1069
FatI CATG 8 cut(s) 54, 159, 240, 499, 508, 738, 990, 1065
FauI CCCGC 1 cut(s) 1141
FbaI TGATCA 1 cut(s) 511
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 841, 844, 1200
FokI GGATG 3 cut(s) 17, 135, 983
Fsp4HI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 841, 844, 1200
FspBI CTAG 2 cut(s) 368, 1154
GluI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 841, 844, 1200
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 2 cut(s) 586, 809
HaeIII GGCC 2 cut(s) 851, 863
Hin1II CATG 8 cut(s) 58, 163, 244, 503, 512, 742, 994, 1069
HincII GTYRAC 2 cut(s) 85, 544
HindII GTYRAC 2 cut(s) 85, 544
HinfI GANTC 8 cut(s) 400, 431, 609, 661, 671, 883, 1000, 1061
HphI GGTGA 3 cut(s) 160, 450, 964
Hpy166II GTNNAC 4 cut(s) 85, 118, 544, 940
Hpy188I TCNGA 6 cut(s) 230, 364, 385, 918, 997, 1005
Hpy188III TCNNGA 6 cut(s) 35, 129, 143, 428, 500, 603
Hpy8I GTNNAC 4 cut(s) 85, 118, 544, 940
HpyAV CCTTC 5 cut(s) 368, 787, 949, 1027, 1063
HpyCH4III ACNGT 4 cut(s) 287, 485, 876, 1168
HpyCH4V TGCA 7 cut(s) 54, 58, 67, 267, 692, 1218, 1247
HpyF10VI GCNNNNNNNGC 7 cut(s) 64, 67, 273, 338, 573, 876, 1224
HpyF3I CTNAG 7 cut(s) 227, 342, 363, 384, 858, 996, 1095
Hsp92II CATG 8 cut(s) 58, 163, 244, 503, 512, 742, 994, 1069
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 4 cut(s) 165, 455, 511, 1075
LmnI GCTCC 7 cut(s) 273, 338, 475, 581, 605, 1050, 1137
Lsp1109I GCAGC 7 cut(s) 70, 79, 365, 423, 584, 855, 1211
LweI GCATC 2 cut(s) 157, 1256
MaeI CTAG 2 cut(s) 368, 1154
MaeIII GTNAC 2 cut(s) 485, 766
MalI GATC 4 cut(s) 167, 457, 513, 1077
MboI GATC 4 cut(s) 165, 455, 511, 1075
MhlI GDGCHC 1 cut(s) 1107
MluCI AATT 6 cut(s) 111, 423, 436, 1015, 1117, 1213
MlyI GAGTC 5 cut(s) 425, 618, 655, 680, 1070
MmeI TCCRAC 1 cut(s) 497
MseI TTAA 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 1094
MspR9I CCNGG 2 cut(s) 259, 1264
Mva1269I GAATGC 1 cut(s) 1218
MvaI CCWGG 2 cut(s) 259, 1264
MwoI GCNNNNNNNGC 7 cut(s) 64, 67, 273, 338, 573, 876, 1224
NdeII GATC 4 cut(s) 165, 455, 511, 1075
NlaIII CATG 8 cut(s) 58, 163, 244, 503, 512, 742, 994, 1069
NlaIV GGNNCC 1 cut(s) 445
NmeAIII GCCGAG 1 cut(s) 827
NspI RCATGY 3 cut(s) 58, 244, 994
NspV TTCGAA 2 cut(s) 16, 791
PaeI GCATGC 2 cut(s) 58, 244
PagI TCATGA 1 cut(s) 499
PciI ACATGT 1 cut(s) 990
PcsI WCGNNNNNNNCGW 1 cut(s) 753
PctI GAATGC 1 cut(s) 1218
PfeI GAWTC 3 cut(s) 400, 883, 1000
PkrI GCNGC 8 cut(s) 60, 69, 380, 413, 599, 842, 845, 1201
PleI GAGTC 5 cut(s) 425, 617, 655, 679, 1069
PpsI GAGTC 5 cut(s) 425, 617, 655, 679, 1069
PscI ACATGT 1 cut(s) 990
Psp6I CCWGG 2 cut(s) 257, 1262
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 2 cut(s) 257, 1262
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 3 cut(s) 106, 261, 444
PstI CTGCAG 1 cut(s) 69
PstNI CAGNNNCTG 2 cut(s) 64, 701
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 3 cut(s) 351, 941, 1086
RsaNI GTAC 3 cut(s) 350, 940, 1085
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 8 cut(s) 59, 68, 379, 412, 598, 841, 844, 1200
Sau3AI GATC 4 cut(s) 165, 455, 511, 1075
Sau96I GGNCC 3 cut(s) 106, 261, 444
SchI GAGTC 5 cut(s) 425, 618, 655, 680, 1070
ScrFI CCNGG 2 cut(s) 259, 1264
SduI GDGCHC 1 cut(s) 1107
SfaNI GCATC 2 cut(s) 157, 1256
SfcI CTRYAG 1 cut(s) 65
SfuI TTCGAA 2 cut(s) 16, 791
SinI GGWCC 3 cut(s) 106, 261, 444
SmlI CTYRAG 2 cut(s) 127, 143
SmoI CTYRAG 2 cut(s) 127, 143
SphI GCATGC 2 cut(s) 58, 244
Sse9I AATT 6 cut(s) 111, 423, 436, 1015, 1117, 1213
SsiI CCGC 5 cut(s) 647, 840, 950, 1025, 1148
SspMI CTAG 2 cut(s) 368, 1154
StyD4I CCNGG 2 cut(s) 257, 1262
TaaI ACNGT 4 cut(s) 287, 485, 876, 1168
TaqI TCGA 5 cut(s) 10, 16, 627, 747, 791
TasI AATT 6 cut(s) 111, 423, 436, 1015, 1117, 1213
TatI WGTACW 3 cut(s) 349, 939, 1084
TauI GCSGC 1 cut(s) 843
TfiI GAWTC 3 cut(s) 400, 883, 1000
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 4 cut(s) 226, 1051, 1173, 1209
TseI GCWGC 7 cut(s) 58, 67, 378, 411, 597, 843, 1199
TspDTI ATGAA 6 cut(s) 488, 516, 537, 636, 1082, 1143
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 4 cut(s) 226, 1051, 1173, 1209
VpaK11BI GGWCC 3 cut(s) 106, 261, 444
XagI CCTNNNNNAGG 1 cut(s) 268
XapI RAATTY 3 cut(s) 423, 436, 1015
XceI RCATGY 3 cut(s) 58, 244, 994
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 2 cut(s) 368, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.