RLG00000018165

Protein UPSTREAM OF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011027
Physical Location & Seq
Reverse (-)
26295946 .. 26297941
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018165

Sequence Viewer

Length: 1278 bp
ATGGATGTTCGATTTCGAAGACCCCAAAACAGTCCAGATAGAGCCAAAGTGTGCATGCAACAACTGCAGCCAAGAGTAGCAGTCAACAAACCCACCATCAAAAAGGTCCAAATTGTCTACTACCTCTCAAGAAATGGTCATCTTGAGCATCCTCACTACATGGAGATCACCCATTTGCCCAATCAACCTCTTCGTTTGAGAGATGTAATGGATAGGCTCACTGCTCTCAGAGGCAAGGGCATGCCCTCACTATATTCCTGGTCCTGCAAAAGGAGCTACAAGAACGGTTATGTGTGGAATGATTTAGCCGAAAACGATATAATCTACCCAGCAGATGGAGCTGAGTATGTACTTAAAGGCTCTGAGCTAGTTGAAGGCTGCTCTGAGAGATTGAACCAGATTCAAATAAGCAGCCCCCAACAAATTCAAGACTCAAATTTTGGGTCCAAGAGGAGATCACTACCACTTGCTCCAACCCCAAACAGTAACCACAAGTTTCATGAAGACCATGATCAATATGATGAACAAGAAGAAGAAGAAGTTGACTATGAGGACGAGAAAACAAGCTACACAAGCTCCACAACAGCAAACTCTCGCTGCTCCAGAGGAGTCTCCACAGATGAACTCGAAGAACAACAACAACAACAACCGCAAACCCACAAGACTCCCCCCGAGTCATCTCCTCTCCCAAATGCACCAGCTTCAGTGTTGAACCAACCAAACCACAGCAACAATGTGTCCATGAGGTTCGAGGACGGCGACCCCATTGGTACGAAACAGAGCTACTCTGTTTCGAAGGCAGGGCAGGGTAAGAACTCTGTTCTGCTCCAGCTCATTGCTTGCGGCAGCTCGGCCGTGGCTAAGGCCAAAAGCACACCGTGCGTGAGTCAAGGGATTGTGAAGAGGGAGAGGAGTAGTCAGAGTTTTCGTAAAGAGGTGGTGTACAGGAGTGCGGTGAAGGTTGCCATAGAGGATGAGGATATGATTACTTACATGTCTGAGAATCCGAGGTTTGGGAATTTACAGGCGGAGGAGAAGGAGTATTTCAGTGGGAGCATTGTGGAGTCCATGAAGGAAGATCAAAGAGTACATTCAGCTGAGCCTGTGCTAAAAAAATCCAATTCTTATCATGAAGAAAGGAGCAACAAAGCCGGGCTAGGAGAAGAAACAGTGGAGGAGGATGAGGAAGAGAAGAGAGAGAAAGCAGCGGTGAGAGGAAATTGCATTCCTCGCAAGTTCTGTGCTACTGGTGCATCATCAAAGCCAACCAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

426

Amino Acids

48.02

Weight (kDa)

6.45

Isoelectric Point (pI)

64.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOK PF06136 36 - 124 9.8e-48 SOSEKI protein DIX-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10150 AT5G10150 AT5G10150 AT5G10150
fragaria_vesca FvH4_1g21340 FvH4_1g21340
malus_domestica MD01G1025500.v1.1
prunus_persica Prupe.6G181200_v2.0.a1
pyrus_communis pycom01g05360 pycom01g05370
rosa_chinensis RchiOBHm_Chr2g0115201
rosa_laevigata RLG00000018165
rosa_multiflora Rmu_sc0002784.1_g000027
rosa_roxburghii Rroxscaffold_2G00130670
rosa_rugosa Rorug02G0194300
rosa_samantha Rh2AG252800 Rh2BG262400 Rh2CG257400 Rh2DG261000
rosa_wichuraiana Rw2G019720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 335
AccI GTMKAC 1 cut(s) 117
AciI CCGC 5 cut(s) 650, 843, 953, 1028, 1208
AcoI YGGCCR 1 cut(s) 852
AcsI RAATTY 3 cut(s) 423, 436, 1018
AcuI CTGAAG 1 cut(s) 687
AdeI CACNNNGTG 1 cut(s) 879
AfaI GTAC 4 cut(s) 351, 772, 944, 1089
AfiI CCNNNNNNNGG 3 cut(s) 270, 335, 1013
AflIII ACRYGT 1 cut(s) 993
AgsI TTSAA 5 cut(s) 374, 394, 404, 428, 712
AjnI CCWGG 2 cut(s) 257, 1268
Alw26I GTCTC 1 cut(s) 616
Ama87I CYCGRG 1 cut(s) 671
AoxI GGCC 2 cut(s) 852, 864
ApeKI GCWGC 6 cut(s) 67, 378, 411, 597, 846, 1205
ApoI RAATTY 3 cut(s) 423, 436, 1018
ArsI GACNNNNNNTTYG 4 cut(s) 422, 428, 454, 460
AspS9I GGNCC 3 cut(s) 106, 261, 444
AsuC2I CCSGG 1 cut(s) 1153
AsuHPI GGTGA 3 cut(s) 160, 967, 1222
AsuII TTCGAA 2 cut(s) 16, 794
AvaI CYCGRG 1 cut(s) 671
AvaII GGWCC 3 cut(s) 106, 261, 444
BbsI GAAGAC 2 cut(s) 25, 510
BbvI GCAGC 6 cut(s) 79, 365, 423, 584, 858, 1217
BccI CCATC 2 cut(s) 104, 329
BceAI ACGGC 2 cut(s) 772, 839
BciT130I CCWGG 2 cut(s) 259, 1270
BclI TGATCA 1 cut(s) 511
BcnI CCSGG 1 cut(s) 1153
BcoDI GTCTC 1 cut(s) 616
BfaI CTAG 2 cut(s) 368, 1157
BfmI CTRYAG 1 cut(s) 65
BisI GCNGC 7 cut(s) 68, 379, 412, 598, 844, 847, 1206
BlpI GCTNAGC 1 cut(s) 1098
BlsI GCNGC 7 cut(s) 69, 380, 413, 599, 845, 848, 1207
Bme1390I CCNGG 3 cut(s) 259, 1153, 1270
Bme18I GGWCC 3 cut(s) 106, 261, 444
BmeT110I CYCGRG 1 cut(s) 671
BmgT120I GGNCC 3 cut(s) 106, 261, 444
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 3 cut(s) 259, 1153, 1270
BmsI GCATC 2 cut(s) 157, 1262
BpiI GAAGAC 2 cut(s) 25, 510
BpmI CTGGAG 2 cut(s) 586, 812
Bpu10I CCTNAGC 1 cut(s) 861
Bpu1102I GCTNAGC 1 cut(s) 1098
Bpu14I TTCGAA 2 cut(s) 16, 794
BpuEI CTTGAG 2 cut(s) 112, 164
BpuMI CCSGG 1 cut(s) 1153
BsaJI CCNNGG 2 cut(s) 855, 1007
BsaXI ACNNNNNCTCC 4 cut(s) 560, 590, 1025, 1055
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 335, 1013
Bse1I ACTGG 1 cut(s) 1252
Bse3DI GCAATG 1 cut(s) 834
BseBI CCWGG 2 cut(s) 259, 1270
BseDI CCNNGG 2 cut(s) 855, 1007
BseGI GGATG 4 cut(s) 10, 148, 979, 1186
BseLI CCNNNNNNNGG 3 cut(s) 270, 335, 1013
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 6 cut(s) 241, 333, 354, 375, 990, 1089
BseNI ACTGG 1 cut(s) 1252
BseRI GAGGAG 6 cut(s) 466, 621, 672, 925, 1046, 1190
BseX3I CGGCCG 1 cut(s) 852
BseXI GCAGC 6 cut(s) 79, 365, 423, 584, 858, 1217
BseYI CCCAGC 1 cut(s) 328
Bsh1285I CGRYCG 1 cut(s) 855
BshFI GGCC 2 cut(s) 854, 866
BsiEI CGRYCG 1 cut(s) 855
BsiHKCI CYCGRG 1 cut(s) 671
BsiSI CCGG 1 cut(s) 1152
BslI CCNNNNNNNGG 3 cut(s) 270, 335, 1013
BsmAI GTCTC 1 cut(s) 616
BsmI GAATGC 1 cut(s) 1224
BsnI GGCC 2 cut(s) 854, 866
BsoBI CYCGRG 1 cut(s) 671
Bsp119I TTCGAA 2 cut(s) 16, 794
Bsp1407I TGTACA 1 cut(s) 942
Bsp143I GATC 4 cut(s) 165, 455, 511, 1078
Bsp1720I GCTNAGC 1 cut(s) 1098
BspACI CCGC 5 cut(s) 650, 843, 953, 1028, 1208
BspANI GGCC 2 cut(s) 854, 866
BspCNI CTCAG 6 cut(s) 240, 334, 355, 376, 991, 1090
BspHI TCATGA 2 cut(s) 499, 1129
BspLI GGNNCC 1 cut(s) 445
BspMAI CTGCAG 1 cut(s) 69
BspT104I TTCGAA 2 cut(s) 16, 794
BsrDI GCAATG 1 cut(s) 834
BsrGI TGTACA 1 cut(s) 942
BsrI ACTGG 1 cut(s) 1252
BssECI CCNNGG 2 cut(s) 855, 1007
BssMI GATC 4 cut(s) 165, 455, 511, 1078
Bst2UI CCWGG 2 cut(s) 259, 1270
Bst4CI ACNGT 5 cut(s) 32, 287, 485, 879, 1171
Bst6I CTCTTC 4 cut(s) 195, 896, 1182, 1187
BstAPI GCANNNNNTGC 2 cut(s) 64, 879
BstAUI TGTACA 1 cut(s) 942
BstBI TTCGAA 2 cut(s) 16, 794
BstC8I GCNNGC 3 cut(s) 56, 242, 841
BstDEI CTNAG 7 cut(s) 227, 342, 363, 384, 861, 999, 1098
BstDSI CCRYGG 1 cut(s) 855
BstENI CCTNNNNNAGG 1 cut(s) 268
BstF5I GGATG 4 cut(s) 10, 148, 979, 1186
BstKTI GATC 4 cut(s) 168, 458, 514, 1081
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 4 cut(s) 165, 455, 511, 1078
BstMCI CGRYCG 1 cut(s) 855
BstMWI GCNNNNNNNGC 7 cut(s) 64, 273, 338, 573, 879, 1230, 1250
BstNI CCWGG 2 cut(s) 259, 1270
BstNSI RCATGY 3 cut(s) 58, 244, 997
BstSCI CCNGG 3 cut(s) 257, 1151, 1268
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 6 cut(s) 79, 365, 423, 584, 858, 1217
BstV2I GAAGAC 2 cut(s) 25, 510
BstZI CGGCCG 1 cut(s) 852
BsuRI GGCC 2 cut(s) 854, 866
BtgI CCRYGG 1 cut(s) 855
BtsCI GGATG 4 cut(s) 10, 148, 979, 1186
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 4 cut(s) 219, 711, 1054, 1176
Cac8I GCNNGC 3 cut(s) 56, 242, 841
CciI TCATGA 2 cut(s) 499, 1129
Cfr13I GGNCC 3 cut(s) 106, 261, 444
Csp6I GTAC 4 cut(s) 350, 771, 943, 1088
CviAII CATG 9 cut(s) 55, 160, 241, 500, 509, 742, 994, 1069, 1130
CviQI GTAC 4 cut(s) 350, 771, 943, 1088
DdeI CTNAG 7 cut(s) 227, 342, 363, 384, 861, 999, 1098
DpnI GATC 4 cut(s) 167, 457, 513, 1080
DpnII GATC 4 cut(s) 165, 455, 511, 1078
DraIII CACNNNGTG 1 cut(s) 879
EaeI YGGCCR 1 cut(s) 852
EagI CGGCCG 1 cut(s) 852
Eam1104I CTCTTC 4 cut(s) 195, 896, 1182, 1187
EarI CTCTTC 4 cut(s) 195, 896, 1182, 1187
EciI GGCGGA 1 cut(s) 1043
EclXI CGGCCG 1 cut(s) 852
Eco47I GGWCC 3 cut(s) 106, 261, 444
Eco52I CGGCCG 1 cut(s) 852
Eco57I CTGAAG 1 cut(s) 687
Eco88I CYCGRG 1 cut(s) 671
EcoNI CCTNNNNNAGG 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 257, 1268
FaeI CATG 9 cut(s) 58, 163, 244, 503, 512, 745, 997, 1072, 1133
FatI CATG 9 cut(s) 54, 159, 240, 499, 508, 741, 993, 1068, 1129
FbaI TGATCA 1 cut(s) 511
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 7 cut(s) 68, 379, 412, 598, 844, 847, 1206
FokI GGATG 4 cut(s) 17, 135, 986, 1193
Fsp4HI GCNGC 7 cut(s) 68, 379, 412, 598, 844, 847, 1206
FspBI CTAG 2 cut(s) 368, 1157
GluI GCNGC 7 cut(s) 68, 379, 412, 598, 844, 847, 1206
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 2 cut(s) 586, 812
HaeIII GGCC 2 cut(s) 854, 866
HapII CCGG 1 cut(s) 1152
Hin1II CATG 9 cut(s) 58, 163, 244, 503, 512, 745, 997, 1072, 1133
HincII GTYRAC 2 cut(s) 85, 544
HindII GTYRAC 2 cut(s) 85, 544
HinfI GANTC 8 cut(s) 400, 431, 609, 664, 674, 886, 1003, 1064
HpaII CCGG 1 cut(s) 1152
HphI GGTGA 3 cut(s) 160, 967, 1222
Hpy166II GTNNAC 4 cut(s) 85, 118, 544, 943
Hpy188I TCNGA 6 cut(s) 230, 364, 385, 921, 1000, 1008
Hpy188III TCNNGA 7 cut(s) 35, 129, 143, 428, 500, 603, 1130
Hpy8I GTNNAC 4 cut(s) 85, 118, 544, 943
HpyAV CCTTC 5 cut(s) 368, 790, 952, 1030, 1066
HpyCH4III ACNGT 5 cut(s) 32, 287, 485, 879, 1171
HpyCH4V TGCA 7 cut(s) 54, 58, 67, 267, 695, 1224, 1253
HpyF10VI GCNNNNNNNGC 7 cut(s) 64, 273, 338, 573, 879, 1230, 1250
HpyF3I CTNAG 7 cut(s) 227, 342, 363, 384, 861, 999, 1098
Hsp92II CATG 9 cut(s) 58, 163, 244, 503, 512, 745, 997, 1072, 1133
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 4 cut(s) 165, 455, 511, 1078
LmnI GCTCC 8 cut(s) 273, 338, 475, 581, 605, 831, 1053, 1140
Lsp1109I GCAGC 6 cut(s) 79, 365, 423, 584, 858, 1217
LweI GCATC 2 cut(s) 157, 1262
MaeI CTAG 2 cut(s) 368, 1157
MaeIII GTNAC 1 cut(s) 485
MalI GATC 4 cut(s) 167, 457, 513, 1080
MboI GATC 4 cut(s) 165, 455, 511, 1078
MluCI AATT 6 cut(s) 111, 423, 436, 1018, 1120, 1219
MlyI GAGTC 6 cut(s) 425, 618, 658, 683, 895, 1073
MmeI TCCRAC 1 cut(s) 497
MseI TTAA 1 cut(s) 354
MspA1I CMGCKG 2 cut(s) 1097, 1208
MspI CCGG 1 cut(s) 1152
MspR9I CCNGG 3 cut(s) 259, 1153, 1270
Mva1269I GAATGC 1 cut(s) 1224
MvaI CCWGG 2 cut(s) 259, 1270
MwoI GCNNNNNNNGC 7 cut(s) 64, 273, 338, 573, 879, 1230, 1250
NciI CCSGG 1 cut(s) 1153
NdeII GATC 4 cut(s) 165, 455, 511, 1078
NlaIII CATG 9 cut(s) 58, 163, 244, 503, 512, 745, 997, 1072, 1133
NlaIV GGNNCC 1 cut(s) 445
NmeAIII GCCGAG 1 cut(s) 830
NspI RCATGY 3 cut(s) 58, 244, 997
NspV TTCGAA 2 cut(s) 16, 794
PaeI GCATGC 2 cut(s) 58, 244
PagI TCATGA 2 cut(s) 499, 1129
PciI ACATGT 1 cut(s) 993
PcsI WCGNNNNNNNCGW 1 cut(s) 756
PctI GAATGC 1 cut(s) 1224
PfeI GAWTC 2 cut(s) 400, 1003
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 7 cut(s) 69, 380, 413, 599, 845, 848, 1207
PleI GAGTC 6 cut(s) 425, 617, 658, 682, 894, 1072
PpsI GAGTC 6 cut(s) 425, 617, 658, 682, 894, 1072
PscI ACATGT 1 cut(s) 993
Psp6I CCWGG 2 cut(s) 257, 1268
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 2 cut(s) 257, 1268
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 3 cut(s) 106, 261, 444
PstI CTGCAG 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 1097
RsaI GTAC 4 cut(s) 351, 772, 944, 1089
RsaNI GTAC 4 cut(s) 350, 771, 943, 1088
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 7 cut(s) 68, 379, 412, 598, 844, 847, 1206
Sau3AI GATC 4 cut(s) 165, 455, 511, 1078
Sau96I GGNCC 3 cut(s) 106, 261, 444
SchI GAGTC 6 cut(s) 425, 618, 658, 683, 895, 1073
ScrFI CCNGG 3 cut(s) 259, 1153, 1270
SfaNI GCATC 2 cut(s) 157, 1262
SfcI CTRYAG 1 cut(s) 65
SfuI TTCGAA 2 cut(s) 16, 794
SinI GGWCC 3 cut(s) 106, 261, 444
SmlI CTYRAG 2 cut(s) 127, 143
SmoI CTYRAG 2 cut(s) 127, 143
SphI GCATGC 2 cut(s) 58, 244
Sse9I AATT 6 cut(s) 111, 423, 436, 1018, 1120, 1219
SsiI CCGC 5 cut(s) 650, 843, 953, 1028, 1208
SspMI CTAG 2 cut(s) 368, 1157
StyD4I CCNGG 3 cut(s) 257, 1151, 1268
TaaI ACNGT 5 cut(s) 32, 287, 485, 879, 1171
TaqI TCGA 5 cut(s) 10, 16, 627, 750, 794
TasI AATT 6 cut(s) 111, 423, 436, 1018, 1120, 1219
TatI WGTACW 3 cut(s) 349, 942, 1087
TauI GCSGC 1 cut(s) 846
TfiI GAWTC 2 cut(s) 400, 1003
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 4 cut(s) 226, 711, 1054, 1176
TseI GCWGC 6 cut(s) 67, 378, 411, 597, 846, 1205
TspDTI ATGAA 6 cut(s) 488, 516, 537, 636, 1085, 1146
TspRI CASTG 4 cut(s) 226, 711, 1054, 1176
Van91I CCANNNNNTGG 1 cut(s) 335
VpaK11BI GGWCC 3 cut(s) 106, 261, 444
XagI CCTNNNNNAGG 1 cut(s) 268
XapI RAATTY 3 cut(s) 423, 436, 1018
XceI RCATGY 3 cut(s) 58, 244, 997
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 2 cut(s) 368, 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.