Rroxscaffold_2G00130670

Protein UPSTREAM OF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011027
Physical Location & Seq
Reverse (-)
66894413 .. 66896871
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130670.1

Sequence Viewer

Length: 714 bp
ATGGATGTTCGATTTCGAAGACCCCAAACCAGTCCAGATAGAGCCAAAGTGTGCATGCGGCAACTGCAGCCAAGAGTAGCAGTCAACAAACCCACCATCAAAAAGGTCCAAGTTGTCTACTACCTGTCAAGAAATGGTCATCTTGAGCATCCTCACTACATGGAGATCACCCATTTGCCCAATCAACCTCTTCGTTTGAGAGATATAATGGACAGGCTCACTGCTCTCAGAGGCAAGGGCATGCCCTCACTATATTCCTGGTCCTGCAAAAGGAGCTACAAGAACGGTTATGTGTGGAATGATTTAGCAGAAAACGACATAATCTACCCAGCAGATGGAGCTGAGTATGTACTTAAAGGCTCTGAGCTTGTTGAAGGCTGCTCTGAGAGATTGAATCAGATTCAAATAAGCAGCCCCCAACAAATTCAAGACTCAAATTTTGGGTCCAAGAGGAGATCACCACCACTTGCTCCGACCCCAAACAGTAACCACAAGTTTCATGAAGACCATGATCAATATGATGAACAAGAAGAAGAAGAAGTTGACTATGAGGACGAGAAAACAAGTTACACAAGCTCCACAACAACAAACTCTCGCTGCTCCAGAGGAGTCTCCACAGATGAACTCGAAGAACAACAACAACAACAACCACCGCAAACCCACAAGACTCCCCCGAGTCATCTCCTCTCCCAAATGCACCAGCTTCAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

237

Amino Acids

27.5

Weight (kDa)

6.36

Isoelectric Point (pI)

71.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SOK PF06136 36 - 124 4.4e-48 SOSEKI protein DIX-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10150 AT5G10150 AT5G10150 AT5G10150
fragaria_vesca FvH4_1g21340 FvH4_1g21340
malus_domestica MD01G1025500.v1.1
prunus_persica Prupe.6G181200_v2.0.a1
pyrus_communis pycom01g05360 pycom01g05370
rosa_chinensis RchiOBHm_Chr2g0115201
rosa_laevigata RLG00000018165
rosa_multiflora Rmu_sc0002784.1_g000027
rosa_roxburghii Rroxscaffold_2G00130670
rosa_rugosa Rorug02G0194300
rosa_samantha Rh2AG252800 Rh2BG262400 Rh2CG257400 Rh2DG261000
rosa_wichuraiana Rw2G019720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 335
AccI GTMKAC 1 cut(s) 117
AciI CCGC 2 cut(s) 58, 653
AcsI RAATTY 2 cut(s) 423, 436
AcuI CTGAAG 1 cut(s) 689
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 2 cut(s) 270, 335
AgsI TTSAA 4 cut(s) 374, 394, 404, 428
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 5 cut(s) 276, 341, 367, 576, 703
AluI AGCT 5 cut(s) 276, 341, 367, 576, 703
Alw26I GTCTC 1 cut(s) 616
Ama87I CYCGRG 1 cut(s) 673
ApeKI GCWGC 4 cut(s) 67, 378, 411, 597
ApoI RAATTY 2 cut(s) 423, 436
ArsI GACNNNNNNTTYG 4 cut(s) 422, 428, 454, 460
AspS9I GGNCC 3 cut(s) 106, 261, 444
AsuHPI GGTGA 2 cut(s) 160, 450
AsuII TTCGAA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 673
AvaII GGWCC 3 cut(s) 106, 261, 444
BbsI GAAGAC 2 cut(s) 25, 510
BbvI GCAGC 4 cut(s) 79, 365, 423, 584
BccI CCATC 2 cut(s) 104, 329
BciT130I CCWGG 1 cut(s) 259
BclI TGATCA 1 cut(s) 511
BcoDI GTCTC 1 cut(s) 616
BfmI CTRYAG 1 cut(s) 65
BisI GCNGC 5 cut(s) 59, 68, 379, 412, 598
BlsI GCNGC 5 cut(s) 60, 69, 380, 413, 599
Bme1390I CCNGG 1 cut(s) 259
Bme18I GGWCC 3 cut(s) 106, 261, 444
BmeT110I CYCGRG 1 cut(s) 673
BmgT120I GGNCC 3 cut(s) 106, 261, 444
BmiI GGNNCC 1 cut(s) 445
BmrFI CCNGG 1 cut(s) 259
BmsI GCATC 1 cut(s) 157
BpiI GAAGAC 2 cut(s) 25, 510
BpmI CTGGAG 1 cut(s) 586
Bpu14I TTCGAA 1 cut(s) 16
BpuEI CTTGAG 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 560, 590
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 335
Bse1I ACTGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 10, 148
BseLI CCNNNNNNNGG 2 cut(s) 270, 335
BseMII CTCAG 4 cut(s) 241, 333, 354, 375
BseNI ACTGG 1 cut(s) 30
BseRI GAGGAG 3 cut(s) 466, 621, 674
BseXI GCAGC 4 cut(s) 79, 365, 423, 584
BseYI CCCAGC 1 cut(s) 328
BsiHKCI CYCGRG 1 cut(s) 673
BslI CCNNNNNNNGG 2 cut(s) 270, 335
BsmAI GTCTC 1 cut(s) 616
BsoBI CYCGRG 1 cut(s) 673
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 3 cut(s) 165, 455, 511
BspACI CCGC 2 cut(s) 58, 653
BspCNI CTCAG 4 cut(s) 240, 334, 355, 376
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 1 cut(s) 445
BspMAI CTGCAG 1 cut(s) 69
BspT104I TTCGAA 1 cut(s) 16
BsrI ACTGG 1 cut(s) 30
BssMI GATC 3 cut(s) 165, 455, 511
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 2 cut(s) 287, 485
Bst6I CTCTTC 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 56, 242
BstDEI CTNAG 4 cut(s) 227, 342, 363, 384
BstENI CCTNNNNNAGG 1 cut(s) 268
BstF5I GGATG 2 cut(s) 10, 148
BstKTI GATC 3 cut(s) 168, 458, 514
BstMAI GTCTC 1 cut(s) 616
BstMBI GATC 3 cut(s) 165, 455, 511
BstMWI GCNNNNNNNGC 4 cut(s) 64, 67, 273, 338
BstNI CCWGG 1 cut(s) 259
BstNSI RCATGY 2 cut(s) 58, 244
BstSCI CCNGG 1 cut(s) 257
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 4 cut(s) 79, 365, 423, 584
BstV2I GAAGAC 2 cut(s) 25, 510
BtsCI GGATG 2 cut(s) 10, 148
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 219, 713
Cac8I GCNNGC 2 cut(s) 56, 242
CciI TCATGA 1 cut(s) 499
Cfr13I GGNCC 3 cut(s) 106, 261, 444
Csp6I GTAC 1 cut(s) 350
CviAII CATG 5 cut(s) 55, 160, 241, 500, 509
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 4 cut(s) 227, 342, 363, 384
DpnI GATC 3 cut(s) 167, 457, 513
DpnII GATC 3 cut(s) 165, 455, 511
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco47I GGWCC 3 cut(s) 106, 261, 444
Eco57I CTGAAG 1 cut(s) 689
Eco88I CYCGRG 1 cut(s) 673
EcoNI CCTNNNNNAGG 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 257
FaeI CATG 5 cut(s) 58, 163, 244, 503, 512
FatI CATG 5 cut(s) 54, 159, 240, 499, 508
FbaI TGATCA 1 cut(s) 511
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 5 cut(s) 59, 68, 379, 412, 598
FokI GGATG 2 cut(s) 17, 135
Fsp4HI GCNGC 5 cut(s) 59, 68, 379, 412, 598
GluI GCNGC 5 cut(s) 59, 68, 379, 412, 598
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 586
Hin1II CATG 5 cut(s) 58, 163, 244, 503, 512
HincII GTYRAC 2 cut(s) 85, 544
HindII GTYRAC 2 cut(s) 85, 544
HinfI GANTC 6 cut(s) 394, 400, 431, 609, 667, 676
HphI GGTGA 2 cut(s) 160, 450
Hpy166II GTNNAC 3 cut(s) 85, 118, 544
Hpy188I TCNGA 5 cut(s) 230, 364, 385, 399, 474
Hpy188III TCNNGA 6 cut(s) 35, 129, 143, 428, 500, 603
Hpy8I GTNNAC 3 cut(s) 85, 118, 544
HpyAV CCTTC 1 cut(s) 368
HpyCH4III ACNGT 2 cut(s) 287, 485
HpyCH4V TGCA 4 cut(s) 54, 67, 267, 697
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 67, 273, 338
HpyF3I CTNAG 4 cut(s) 227, 342, 363, 384
Hsp92II CATG 5 cut(s) 58, 163, 244, 503, 512
Ksp22I TGATCA 1 cut(s) 511
Kzo9I GATC 3 cut(s) 165, 455, 511
LmnI GCTCC 5 cut(s) 273, 338, 475, 581, 605
LpnPI CCDG 9 cut(s) 43, 48, 137, 199, 244, 271, 277, 342, 616
Lsp1109I GCAGC 4 cut(s) 79, 365, 423, 584
LweI GCATC 1 cut(s) 157
MaeIII GTNAC 2 cut(s) 485, 566
MalI GATC 3 cut(s) 167, 457, 513
MboI GATC 3 cut(s) 165, 455, 511
MboII GAAGA 7 cut(s) 30, 182, 515, 542, 545, 548, 641
MluCI AATT 2 cut(s) 423, 436
MlyI GAGTC 4 cut(s) 425, 618, 661, 685
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 8 cut(s) 162, 198, 224, 256, 444, 544, 599, 695
MseI TTAA 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 259
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 4 cut(s) 64, 67, 273, 338
NdeII GATC 3 cut(s) 165, 455, 511
NlaIII CATG 5 cut(s) 58, 163, 244, 503, 512
NlaIV GGNNCC 1 cut(s) 445
NspI RCATGY 2 cut(s) 58, 244
NspV TTCGAA 1 cut(s) 16
PaeI GCATGC 2 cut(s) 58, 244
PagI TCATGA 1 cut(s) 499
PfeI GAWTC 2 cut(s) 394, 400
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 5 cut(s) 60, 69, 380, 413, 599
PleI GAGTC 4 cut(s) 425, 617, 661, 684
PpsI GAGTC 4 cut(s) 425, 617, 661, 684
Psp6I CCWGG 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 445
PspPI GGNCC 3 cut(s) 106, 261, 444
PstI CTGCAG 1 cut(s) 69
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 5 cut(s) 59, 68, 379, 412, 598
Sau3AI GATC 3 cut(s) 165, 455, 511
Sau96I GGNCC 3 cut(s) 106, 261, 444
SchI GAGTC 4 cut(s) 425, 618, 661, 685
ScrFI CCNGG 1 cut(s) 259
SetI ASST 8 cut(s) 108, 126, 190, 278, 343, 369, 578, 705
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 65
SfuI TTCGAA 1 cut(s) 16
SinI GGWCC 3 cut(s) 106, 261, 444
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SphI GCATGC 2 cut(s) 58, 244
Sse9I AATT 2 cut(s) 423, 436
SsiI CCGC 2 cut(s) 58, 653
StyD4I CCNGG 1 cut(s) 257
TaaI ACNGT 2 cut(s) 287, 485
TaqI TCGA 3 cut(s) 10, 16, 627
TasI AATT 2 cut(s) 423, 436
TatI WGTACW 1 cut(s) 349
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 2 cut(s) 394, 400
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TscAI CASTG 2 cut(s) 226, 713
TseI GCWGC 4 cut(s) 67, 378, 411, 597
TspDTI ATGAA 4 cut(s) 488, 516, 537, 636
TspRI CASTG 2 cut(s) 226, 713
Van91I CCANNNNNTGG 1 cut(s) 335
VpaK11BI GGWCC 3 cut(s) 106, 261, 444
XagI CCTNNNNNAGG 1 cut(s) 268
XapI RAATTY 2 cut(s) 423, 436
XceI RCATGY 2 cut(s) 58, 244
XmiI GTMKAC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.