pycom01g05370

Protein UPSTREAM OF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011027
Physical Location & Seq
Forward (+)
5081305 .. 5081739
435 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g05370.1

Sequence Viewer

Length: 276 bp
ATGTCTGAGAATCCAAGGTTTGGGAATTTACAGGCAGAGGAGAAAGAGTATTTTAGTGGGAGTATTGTGGACGACATGAAAGACCAAGATCGAGTTTTGGCTGAACCTATGCCTGGGCTTAAAAGATCAAATTCCTACAACGAACAAAGGAGCTCCAAGGCTGGGTTTGTTTCAGAAACTGTAGAAGAAGAGAAGAAAGAGAAAGCAGCGGTGAAAGGAAAGTGCATTCCTCGTAAACTATATTCTTCTGCTGCATCAAAACAAAGCAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF966

Protein Analysis

92

Amino Acids

10.23

Weight (kDa)

9.01

Isoelectric Point (pI)

57.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011027)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10150 AT5G10150 AT5G10150 AT5G10150
fragaria_vesca FvH4_1g21340 FvH4_1g21340
malus_domestica MD01G1025500.v1.1
prunus_persica Prupe.6G181200_v2.0.a1
pyrus_communis pycom01g05360 pycom01g05370
rosa_chinensis RchiOBHm_Chr2g0115201
rosa_laevigata RLG00000018165
rosa_multiflora Rmu_sc0002784.1_g000027
rosa_roxburghii Rroxscaffold_2G00130670
rosa_rugosa Rorug02G0194300
rosa_samantha Rh2AG252800 Rh2BG262400 Rh2CG257400 Rh2DG261000
rosa_wichuraiana Rw2G019720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 20
AciI CCGC 1 cut(s) 209
AcsI RAATTY 2 cut(s) 25, 130
AfiI CCNNNNNNNGG 3 cut(s) 20, 113, 162
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
Alw21I GWGCWC 1 cut(s) 155
AlwNI CAGNNNCTG 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 206, 251
ApoI RAATTY 2 cut(s) 25, 130
AsuHPI GGTGA 1 cut(s) 223
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 2 cut(s) 218, 238
BciT130I CCWGG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 180
BisI GCNGC 2 cut(s) 207, 252
BlsI GCNGC 2 cut(s) 208, 253
Bme1390I CCNGG 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 263
BsaJI CCNNGG 3 cut(s) 14, 113, 156
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 113, 162
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 3 cut(s) 14, 113, 156
BseLI CCNNNNNNNGG 3 cut(s) 20, 113, 162
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 218, 238
BseYI CCCAGC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 155
BslI CCNNNNNNNGG 3 cut(s) 20, 113, 162
BsmI GAATGC 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 88, 125
BspACI CCGC 1 cut(s) 209
BssECI CCNNGG 3 cut(s) 14, 113, 156
BssMI GATC 2 cut(s) 88, 125
BssT1I CCWWGG 2 cut(s) 14, 156
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 6
BstKTI GATC 2 cut(s) 91, 128
BstMBI GATC 2 cut(s) 88, 125
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 218, 238
CaiI CAGNNNCTG 1 cut(s) 179
CviAII CATG 1 cut(s) 76
CviJI RGCY 4 cut(s) 101, 118, 153, 161
CviKI_1 RGCY 4 cut(s) 101, 118, 153, 161
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 90, 127
DpnII GATC 2 cut(s) 88, 125
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 14, 156
Eco24I GRGCYC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 14, 156
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 2 cut(s) 14, 156
FaeI CATG 1 cut(s) 79
FaiI YATR 3 cut(s) 77, 110, 241
FatI CATG 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 207, 252
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 207, 252
GluI GCNGC 2 cut(s) 207, 252
GsaI CCCAGC 1 cut(s) 165
Hin1II CATG 1 cut(s) 79
HinfI GANTC 1 cut(s) 10
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 2 cut(s) 70, 236
Hpy188I TCNGA 2 cut(s) 7, 175
Hpy8I GTNNAC 2 cut(s) 70, 236
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 225, 254
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 1 cut(s) 79
Kzo9I GATC 2 cut(s) 88, 125
LmnI GCTCC 2 cut(s) 150, 158
LpnPI CCDG 4 cut(s) 17, 99, 126, 147
Lsp1109I GCAGC 2 cut(s) 218, 238
LweI GCATC 1 cut(s) 263
MalI GATC 2 cut(s) 90, 127
MboI GATC 2 cut(s) 88, 125
MboII GAAGA 4 cut(s) 197, 200, 205, 237
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 2 cut(s) 25, 130
MnlI CCTC 2 cut(s) 31, 240
MseI TTAA 1 cut(s) 120
MspA1I CMGCKG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 225
MvaI CCWGG 1 cut(s) 114
NdeII GATC 2 cut(s) 88, 125
NlaIII CATG 1 cut(s) 79
PctI GAATGC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 20
PkrI GCNGC 2 cut(s) 208, 253
Psp124BI GAGCTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 112
PstNI CAGNNNCTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 2 cut(s) 207, 252
Sau3AI GATC 2 cut(s) 88, 125
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 155
SetI ASST 3 cut(s) 20, 109, 155
SfaNI GCATC 1 cut(s) 263
SfcI CTRYAG 1 cut(s) 180
Sse9I AATT 2 cut(s) 25, 130
SsiI CCGC 1 cut(s) 209
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 2 cut(s) 14, 156
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 91
TasI AATT 2 cut(s) 25, 130
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TseI GCWGC 2 cut(s) 206, 251
TspDTI ATGAA 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 20
XapI RAATTY 2 cut(s) 25, 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.