FvH4_1g21880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008831
Physical Location & Seq
Reverse (-)
13824235 .. 13825155
921 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21880.t1

Sequence Viewer

Length: 504 bp
ATGAGATTTCCTCTATCCAACATGATAACCATTGTGATACTCCTCCTCGGGGTTTCTTCGTCCGCCATTCATCCTCCTAAACATGAGATATGTGAAACTACCTTGGGGTTGATACATCCTTGCCTTCCGTTGGATGATCTTTGGAAGCCTACACCAGCTTGCTGTAACGCTGTGGCGCCCCTGGGCGATAAAATAGCGCAGATGAACTTATGTGTGTGTTTCAAGCTTTTACAAACAGCAGGGCCTCTCAACTTAACTGTACTTGGTCGTCTGTTCACCAGCTGTGACGTTTCTGTGAAGCTTCCGCCGGTACCTATCCCGTGTGACTTTGAGTGTTCTGACTATGTACTTGATGGGGATTCAACGATCGAATCTTACTGGGCACTGAGAGAAGATCCAAGCATGGGCGAATACTGGGAATTGACGTATCGGGTTTCTGCATTGGCGAAAAGATATTACAAGGAAAACAATAGTAGTAACAGCACCCTTATATCTGCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.45

Weight (kDa)

5.07

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 310
AccB1I GGYRCC 2 cut(s) 175, 310
AciI CCGC 2 cut(s) 63, 305
AclWI GGATC 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 176
AfaI GTAC 3 cut(s) 261, 312, 348
AfiI CCNNNNNNNGG 3 cut(s) 49, 130, 404
AgsI TTSAA 2 cut(s) 223, 363
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 4 cut(s) 158, 226, 282, 301
AluI AGCT 4 cut(s) 158, 226, 282, 301
AlwI GGATC 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 1 cut(s) 242
Asp718I GGTACC 1 cut(s) 310
AspLEI GCGC 2 cut(s) 178, 199
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 385
BanI GGYRCC 2 cut(s) 175, 310
BccI CCATC 1 cut(s) 347
BciT130I CCWGG 1 cut(s) 182
BfoI RGCGCY 1 cut(s) 179
Bme1390I CCNGG 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 177, 312
BmrFI CCNGG 1 cut(s) 182
BmrI ACTGGG 2 cut(s) 388, 424
BmuI ACTGGG 2 cut(s) 388, 424
BplI GAGNNNNNCTC 1 cut(s) 27
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 4 cut(s) 46, 102, 180, 181
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 130, 404
Bse118I RCCGGY 1 cut(s) 307
Bse1I ACTGG 2 cut(s) 383, 419
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 4 cut(s) 46, 102, 180, 181
BseGI GGATG 3 cut(s) 70, 115, 139
BseLI CCNNNNNNNGG 3 cut(s) 49, 130, 404
BseMII CTCAG 1 cut(s) 377
BseNI ACTGG 2 cut(s) 383, 419
BseRI GAGGAG 2 cut(s) 32, 35
BseSI GKGCMC 1 cut(s) 385
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 1 cut(s) 244
BshNI GGYRCC 2 cut(s) 175, 310
BsiEI CGRYCG 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 1 cut(s) 308
BslI CCNNNNNNNGG 3 cut(s) 49, 130, 404
BsnI GGCC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 3 cut(s) 136, 366, 394
BspACI CCGC 2 cut(s) 63, 305
BspANI GGCC 1 cut(s) 244
BspCNI CTCAG 1 cut(s) 378
BspLI GGNNCC 2 cut(s) 177, 312
BspPI GGATC 1 cut(s) 389
BspT107I GGYRCC 2 cut(s) 175, 310
BsrFI RCCGGY 1 cut(s) 307
BsrI ACTGG 2 cut(s) 383, 419
BssAI RCCGGY 1 cut(s) 307
BssECI CCNNGG 4 cut(s) 46, 102, 180, 181
BssMI GATC 3 cut(s) 136, 366, 394
BssNI GRCGYC 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 259
BstACI GRCGYC 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 160
BstDEI CTNAG 1 cut(s) 386
BstF5I GGATG 3 cut(s) 70, 115, 139
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 2 cut(s) 178, 199
BstKTI GATC 3 cut(s) 139, 369, 397
BstMBI GATC 3 cut(s) 136, 366, 394
BstMCI CGRYCG 1 cut(s) 369
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 394
BstYI RGATCY 1 cut(s) 394
BsuRI GGCC 1 cut(s) 244
BtsCI GGATG 3 cut(s) 70, 115, 139
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 1 cut(s) 160
CfoI GCGC 2 cut(s) 178, 199
Cfr10I RCCGGY 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 3 cut(s) 260, 311, 347
CviAII CATG 3 cut(s) 22, 83, 403
CviJI RGCY 6 cut(s) 148, 158, 226, 244, 282, 301
CviKI_1 RGCY 6 cut(s) 148, 158, 226, 244, 282, 301
CviQI GTAC 3 cut(s) 260, 311, 347
DdeI CTNAG 1 cut(s) 386
DinI GGCGCC 1 cut(s) 177
DpnI GATC 3 cut(s) 138, 368, 396
DpnII GATC 3 cut(s) 136, 366, 394
EciI GGCGGA 2 cut(s) 52, 294
Eco130I CCWWGG 1 cut(s) 102
Eco88I CYCGRG 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 102
EgeI GGCGCC 1 cut(s) 177
EheI GGCGCC 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 3 cut(s) 25, 86, 406
FaiI YATR 7 cut(s) 23, 84, 91, 211, 345, 404, 491
FatI CATG 3 cut(s) 21, 82, 402
FokI GGATG 3 cut(s) 57, 102, 146
GlaI GCGC 2 cut(s) 177, 198
HaeII RGCGCY 1 cut(s) 179
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 308
HhaI GCGC 2 cut(s) 178, 199
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 3 cut(s) 25, 86, 406
Hin6I GCGC 2 cut(s) 176, 197
HinP1I GCGC 2 cut(s) 176, 197
HindIII AAGCTT 2 cut(s) 224, 299
HinfI GANTC 2 cut(s) 359, 371
HpaII CCGG 1 cut(s) 308
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 1 cut(s) 340
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 2 cut(s) 288, 425
HpyCH4V TGCA 1 cut(s) 440
HpyF3I CTNAG 1 cut(s) 386
HpySE526I ACGT 2 cut(s) 288, 425
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 3 cut(s) 25, 86, 406
HspAI GCGC 2 cut(s) 176, 197
KasI GGCGCC 1 cut(s) 175
KpnI GGTACC 1 cut(s) 314
Kzo9I GATC 3 cut(s) 136, 366, 394
LpnPI CCDG 8 cut(s) 167, 168, 194, 225, 292, 321, 364, 400
MaeII ACGT 2 cut(s) 288, 425
MaeIII GTNAC 4 cut(s) 164, 284, 323, 476
MalI GATC 3 cut(s) 138, 368, 396
MboI GATC 3 cut(s) 136, 366, 394
MboII GAAGA 2 cut(s) 48, 404
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 1 cut(s) 419
Mly113I GGCGCC 1 cut(s) 176
MmeI TCCRAC 2 cut(s) 42, 111
MnlI CCTC 5 cut(s) 21, 53, 56, 84, 255
MseI TTAA 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
NarI GGCGCC 1 cut(s) 176
NdeII GATC 3 cut(s) 136, 366, 394
NlaIII CATG 3 cut(s) 25, 86, 406
NlaIV GGNNCC 2 cut(s) 177, 312
NmuCI GTSAC 2 cut(s) 284, 323
PasI CCCWGGG 1 cut(s) 181
PfeI GAWTC 2 cut(s) 359, 371
Ple19I CGATCG 1 cut(s) 369
PluTI GGCGCC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 177, 312
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 1 cut(s) 394
PvuI CGATCG 1 cut(s) 369
PvuII CAGCTG 1 cut(s) 282
RsaI GTAC 3 cut(s) 261, 312, 348
RsaNI GTAC 3 cut(s) 260, 311, 347
SaqAI TTAA 1 cut(s) 254
Sau3AI GATC 3 cut(s) 136, 366, 394
Sau96I GGNCC 1 cut(s) 242
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 385
SetI ASST 8 cut(s) 104, 160, 228, 284, 291, 303, 316, 428
SfoI GGCGCC 1 cut(s) 177
Sse9I AATT 1 cut(s) 419
SsiI CCGC 2 cut(s) 63, 305
SspDI GGCGCC 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 2 cut(s) 291, 428
TaqI TCGA 1 cut(s) 369
TasI AATT 1 cut(s) 419
TatI WGTACW 2 cut(s) 259, 346
TfiI GAWTC 2 cut(s) 359, 371
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 2 cut(s) 284, 323
Tsp45I GTSAC 2 cut(s) 284, 323
TspDTI ATGAA 2 cut(s) 59, 218
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.