Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0008831

Physical Location & Seq

Genomic Coordinates Reverse (-)

28934274 .. 28936743

Gene Structure 2470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG268800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAAACTAACTACGGTTCGGTCGGAGTTAACGGCGCGTCGCTAACACGCGCCGTGGAGGCCCTGGCTGCTTTGCTGCTCTCGGCTCTGCTCAGGACCACCCAGCTCTTGGCTCTGGATCCCCTTGCGTTTTTACCTAACAACGGAGCTGGTATTAAAGAAGATCCTCACACTACATCCCAAGCTAAGCCAGCTGATGCTGAGGGAGATGATGAAGATGATGATGGTGATGGTGGACTTGAAGAAGGTGAAGAGGACTTGTCATCTGAAGAAGGAGAAGGGTATGGCAACAAACCGAACAACAATAAGAGTAACTCAAAGAAGGCTCCAGAGGGTGGAGCAGGAGATGGGGCTGAAGAGAATGGAGAAGAGGAAGAGGGCGATGAAGAAGATGGTGATGACCAAGAAGATGACAATGAGGACGACAATGATGAAGAGGATGATGACGATGACGATGATGATGACAATGACGATGGAGGAGAAGAGGATGAGGAAGGAGTCGATGAGGAGAATGAGGAGGAGGAAGAAGATGAAGATGAGGAAGCACTTCAGCCCCCAAAGAAGAGGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.42

Weight (kDa)

4.05

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21880 FvH4_1g21890
rosa_chinensis	RchiOBHm_Chr2g0115891 RchiOBHm_Chr2g0115901
rosa_laevigata	RLG00000018222 RLG00000019453
rosa_multiflora	Rmu_co8053576.1_g000001 Rmu_ssc0000197.1_g000015
rosa_roxburghii	Rroxscaffold_2G00127680 Rroxscaffold_2G00128530 Rroxscaffold_2G00128540
rosa_rugosa	Rorug02G0200700 Rorug02G0200800
rosa_samantha	Rh2AG257600 Rh2AG257700 Rh2BG268700 Rh2BG268800 Rh2CG264200 Rh2CG264300 Rh2DG265900 Rh2DG266000
rosa_wichuraiana	Rw2G020200 Rw2G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	109, 335
AccII	CGCG	2 cut(s)	38, 51
AclWI	GGATC	3 cut(s)	113, 126, 158
AcuI	CTGAAG	3 cut(s)	288, 375, 533
AfiI	CCNNNNNNNGG	3 cut(s)	109, 143, 335
AgsI	TTSAA	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	4 cut(s)	106, 149, 185, 194
AluI	AGCT	4 cut(s)	106, 149, 185, 194
AlwI	GGATC	3 cut(s)	113, 126, 158
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	68, 76
Asp700I	GAANNNNTTC	1 cut(s)	546
AspLEI	GCGC	2 cut(s)	38, 53
AspS9I	GGNCC	2 cut(s)	61, 96
AsuHPI	GGTGA	3 cut(s)	239, 260, 407
AvaII	GGWCC	1 cut(s)	96
BamHI	GGATCC	1 cut(s)	118
BbvCI	CCTCAGC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	55, 63
BccI	CCATC	5 cut(s)	218, 224, 341, 386, 467
BceAI	ACGGC	2 cut(s)	38, 49
BciT130I	CCWGG	1 cut(s)	65
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	69, 77
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	2 cut(s)	70, 78
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	61, 96
BmiI	GGNNCC	2 cut(s)	120, 327
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	312
Bpu10I	CCTNAGC	2 cut(s)	92, 201
Bpu1102I	GCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	54, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 143, 335
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	54, 63
BseGI	GGATG	3 cut(s)	176, 445, 493
BseLI	CCNNNNNNNGG	3 cut(s)	109, 143, 335
BseMII	CTCAG	2 cut(s)	106, 192
BseRI	GAGGAG	4 cut(s)	492, 521, 530, 533
BseXI	GCAGC	2 cut(s)	55, 63
BseYI	CCCAGC	1 cut(s)	102
Bsh1236I	CGCG	2 cut(s)	38, 51
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	1 cut(s)	62
BsiEI	CGRYCG	1 cut(s)	24
BslI	CCNNNNNNNGG	3 cut(s)	109, 143, 335
BsnI	GGCC	1 cut(s)	62
Bsp143I	GATC	2 cut(s)	118, 163
Bsp1720I	GCTNAGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	105, 193
BspFNI	CGCG	2 cut(s)	38, 51
BspLI	GGNNCC	2 cut(s)	120, 327
BspPI	GGATC	3 cut(s)	113, 126, 158
BssECI	CCNNGG	2 cut(s)	54, 63
BssMI	GATC	2 cut(s)	118, 163
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	7 cut(s)	246, 351, 363, 369, 429, 477, 557
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	92, 186, 201
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	3 cut(s)	176, 445, 493
BstFNI	CGCG	2 cut(s)	38, 51
BstHHI	GCGC	2 cut(s)	38, 53
BstKTI	GATC	2 cut(s)	121, 166
BstMBI	GATC	2 cut(s)	118, 163
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 68, 191
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	2 cut(s)	38, 51
BstV1I	GCAGC	2 cut(s)	55, 63
BstX2I	RGATCY	2 cut(s)	118, 163
BstYI	RGATCY	2 cut(s)	118, 163
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	3 cut(s)	176, 445, 493
Cac8I	GCNNGC	1 cut(s)	192
CfoI	GCGC	2 cut(s)	38, 53
Cfr13I	GGNCC	2 cut(s)	61, 96
CseI	GACGC	1 cut(s)	27
DdeI	CTNAG	3 cut(s)	92, 186, 201
DpnI	GATC	2 cut(s)	120, 165
DpnII	GATC	2 cut(s)	118, 163
Eam1104I	CTCTTC	7 cut(s)	246, 351, 363, 369, 429, 477, 557
EarI	CTCTTC	7 cut(s)	246, 351, 363, 369, 429, 477, 557
Eco47I	GGWCC	1 cut(s)	96
Eco57I	CTGAAG	3 cut(s)	288, 375, 533
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	63
FaiI	YATR	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	69, 77
FokI	GGATG	3 cut(s)	163, 452, 500
Fsp4HI	GCNGC	2 cut(s)	69, 77
GlaI	GCGC	2 cut(s)	37, 52
GluI	GCNGC	2 cut(s)	69, 77
GsaI	CCCAGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	62
HgaI	GACGC	1 cut(s)	27
HhaI	GCGC	2 cut(s)	38, 53
Hin6I	GCGC	2 cut(s)	36, 51
HinP1I	GCGC	2 cut(s)	36, 51
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	498
HpaI	GTTAAC	1 cut(s)	31
HphI	GGTGA	3 cut(s)	239, 260, 407
Hpy166II	GTNNAC	2 cut(s)	31, 236
Hpy188I	TCNGA	2 cut(s)	26, 268
Hpy188III	TCNNGA	3 cut(s)	94, 116, 329
Hpy8I	GTNNAC	2 cut(s)	31, 236
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	5 cut(s)	239, 266, 272, 316, 488
HpyCH4III	ACNGT	1 cut(s)	17
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 68, 191
HpyF3I	CTNAG	3 cut(s)	92, 186, 201
HspAI	GCGC	2 cut(s)	36, 51
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	118, 163
LmnI	GCTCC	3 cut(s)	146, 331, 338
LpnPI	CCDG	9 cut(s)	50, 77, 79, 101, 116, 135, 204, 327, 342
Lsp1109I	GCAGC	2 cut(s)	55, 63
LweI	GCATC	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	2 cut(s)	120, 165
MboI	GATC	2 cut(s)	118, 163
MflI	RGATCY	2 cut(s)	118, 163
MlyI	GAGTC	1 cut(s)	507
MmeI	TCCRAC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	546
MseI	TTAA	2 cut(s)	30, 156
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	2 cut(s)	38, 51
MwoI	GCNNNNNNNGC	3 cut(s)	59, 68, 191
NdeII	GATC	2 cut(s)	118, 163
NlaIV	GGNNCC	2 cut(s)	120, 327
NmeAIII	GCCGAG	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	546
PflMI	CCANNNNNTGG	2 cut(s)	109, 335
PkrI	GCNGC	2 cut(s)	70, 78
PleI	GAGTC	1 cut(s)	506
PpsI	GAGTC	1 cut(s)	506
Psp6I	CCWGG	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	120, 327
PspPI	GGNCC	2 cut(s)	61, 96
PsuI	RGATCY	2 cut(s)	118, 163
PvuII	CAGCTG	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	30, 156
SatI	GCNGC	2 cut(s)	69, 77
Sau3AI	GATC	2 cut(s)	118, 163
Sau96I	GGNCC	2 cut(s)	61, 96
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	6 cut(s)	108, 139, 151, 187, 196, 250
SfaNI	GCATC	1 cut(s)	187
SinI	GGWCC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	501
TaqII	GACCGA	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	30, 156
Tru9I	TTAA	2 cut(s)	30, 156
TseI	GCWGC	2 cut(s)	68, 76
TspDTI	ATGAA	4 cut(s)	228, 399, 447, 546
TspGWI	ACGGA	1 cut(s)	159
Van91I	CCANNNNNTGG	2 cut(s)	109, 335
VpaK11BI	GGWCC	1 cut(s)	96
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.