Rh2AG257600

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0008831
Physical Location & Seq
Reverse (-)
29489525 .. 29490773
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG257600.1

Sequence Viewer

Length: 504 bp
ATGCTTGCTCTATCCAAGATGATCACCATTGTGATACTCCTCCTCGGGGTTTCTTGGTCTGCCATTGGTGAACCTTTTAGGCCACACTATCCCGAGACTTGTAAAACTACCTTGAATCTGTTGGATCCTTGCTTTCCGCTATATGATCCTTCGGAACCTACACCGGCTTGCTGTAAAGCTGCGGCGTCTCTCAGCACTCAAGTAATTGCGAAGAAGCTATATGAGTGTCTAGAGGATTTACAAAAGGCAGGGCCTCTGAACTTATCTGCACTTCGTCTTCTGTTCCCCGCCTGTGACGTTTCTGTAAAGCTTCCACCGGCACGTGTCTCGGATGATATGGACTGTTCCCAGTATGAACCTGAAGATTCAAGGGTTGCCACTTATTGGTTATTTTGCTATGATCCAAGCATGGGCTTTTACTGGCAGTATAGAATTCGGTTTTCTACTAGTGTTATGAACAGATATGGCAGTGAAAACAATAGTGCCCTTGTATCTTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

167

Amino Acids

18.77

Weight (kDa)

5.02

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 384
AciI CCGC 3 cut(s) 137, 182, 288
AclWI GGATC 4 cut(s) 119, 132, 140, 395
AcsI RAATTY 1 cut(s) 432
AcuI CTGAAG 1 cut(s) 381
AcvI CACGTG 1 cut(s) 323
AcyI GRCGYC 1 cut(s) 185
AfiI CCNNNNNNNGG 3 cut(s) 46, 384, 410
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 3 cut(s) 115, 369, 500
AhlI ACTAGT 1 cut(s) 446
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 3 cut(s) 179, 217, 310
AluI AGCT 3 cut(s) 179, 217, 310
Alw26I GTCTC 3 cut(s) 89, 192, 331
AlwI GGATC 4 cut(s) 119, 132, 140, 395
Ama87I CYCGRG 2 cut(s) 44, 92
AoxI GGCC 2 cut(s) 80, 251
ApeKI GCWGC 1 cut(s) 179
ApoI RAATTY 1 cut(s) 432
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 16, 80
AvaI CYCGRG 2 cut(s) 44, 92
BaeGI GKGCMC 1 cut(s) 487
BamHI GGATCC 1 cut(s) 124
BbrPI CACGTG 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 309, 343
BclI TGATCA 1 cut(s) 21
BcoDI GTCTC 3 cut(s) 89, 192, 331
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 2 cut(s) 230, 447
BisI GCNGC 2 cut(s) 180, 183
BlsI GCNGC 2 cut(s) 181, 184
BmeT110I CYCGRG 2 cut(s) 44, 92
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 2 cut(s) 126, 156
BmrI ACTGGG 1 cut(s) 343
BmuI ACTGGG 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 384, 410
Bse118I RCCGGY 2 cut(s) 163, 316
Bse1I ACTGG 2 cut(s) 349, 425
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 3 cut(s) 46, 384, 410
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 349, 425
BseRI GAGGAG 2 cut(s) 29, 32
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 1 cut(s) 166
BsgI GTGCAG 1 cut(s) 252
BshFI GGCC 2 cut(s) 82, 253
BsiHKCI CYCGRG 2 cut(s) 44, 92
BsiSI CCGG 2 cut(s) 164, 317
BslI CCNNNNNNNGG 3 cut(s) 46, 384, 410
BsmAI GTCTC 3 cut(s) 89, 192, 331
BsmBI CGTCTC 1 cut(s) 192
BsnI GGCC 2 cut(s) 82, 253
BsoBI CYCGRG 2 cut(s) 44, 92
Bsp1286I GDGCHC 1 cut(s) 487
Bsp143I GATC 4 cut(s) 21, 124, 145, 400
BspACI CCGC 3 cut(s) 137, 182, 288
BspANI GGCC 2 cut(s) 82, 253
BspCNI CTCAG 1 cut(s) 204
BspLI GGNNCC 2 cut(s) 126, 156
BspPI GGATC 4 cut(s) 119, 132, 140, 395
BsrFI RCCGGY 2 cut(s) 163, 316
BsrI ACTGG 2 cut(s) 349, 425
BssAI RCCGGY 2 cut(s) 163, 316
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 4 cut(s) 21, 124, 145, 400
BssNI GRCGYC 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 344
BstACI GRCGYC 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 6, 169
BstDEI CTNAG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 337
BstKTI GATC 4 cut(s) 24, 127, 148, 403
BstMAI GTCTC 3 cut(s) 89, 192, 331
BstMBI GATC 4 cut(s) 21, 124, 145, 400
BstSLI GKGCMC 1 cut(s) 487
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 2 cut(s) 82, 253
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 1 cut(s) 475
BtsIMutI CAGTG 1 cut(s) 475
Cac8I GCNNGC 2 cut(s) 6, 169
Cfr10I RCCGGY 2 cut(s) 163, 316
Cfr13I GGNCC 1 cut(s) 251
CseI GACGC 1 cut(s) 174
CviAII CATG 1 cut(s) 409
CviJI RGCY 7 cut(s) 82, 167, 179, 217, 253, 310, 414
CviKI_1 RGCY 7 cut(s) 82, 167, 179, 217, 253, 310, 414
DdeI CTNAG 1 cut(s) 191
DpnI GATC 4 cut(s) 23, 126, 147, 402
DpnII GATC 4 cut(s) 21, 124, 145, 400
Eco57I CTGAAG 1 cut(s) 381
Eco72I CACGTG 1 cut(s) 323
Eco88I CYCGRG 2 cut(s) 44, 92
EcoO109I RGGNCCY 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 192
FaeI CATG 1 cut(s) 412
FatI CATG 1 cut(s) 408
FauI CCCGC 1 cut(s) 295
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 180, 183
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 2 cut(s) 180, 183
FspBI CTAG 2 cut(s) 230, 447
GluI GCNGC 2 cut(s) 180, 183
HaeIII GGCC 2 cut(s) 82, 253
HapII CCGG 2 cut(s) 164, 317
HgaI GACGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 2 cut(s) 115, 365
HpaII CCGG 2 cut(s) 164, 317
HphI GGTGA 2 cut(s) 16, 80
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 3 cut(s) 154, 258, 331
Hpy188III TCNNGA 2 cut(s) 92, 230
Hpy8I GTNNAC 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 2 cut(s) 297, 322
HpyCH4V TGCA 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 191
HpySE526I ACGT 2 cut(s) 297, 322
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 1 cut(s) 412
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 4 cut(s) 21, 124, 145, 400
LpnPI CCDG 7 cut(s) 177, 234, 304, 330, 362, 372, 406
Lsp1109I GCAGC 1 cut(s) 166
MaeI CTAG 2 cut(s) 230, 447
MaeII ACGT 2 cut(s) 297, 322
MaeIII GTNAC 1 cut(s) 293
MalI GATC 4 cut(s) 23, 126, 147, 402
MboI GATC 4 cut(s) 21, 124, 145, 400
MboII GAAGA 3 cut(s) 223, 269, 374
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 487
MluCI AATT 2 cut(s) 204, 432
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 4 cut(s) 50, 53, 226, 264
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 2 cut(s) 164, 317
NdeII GATC 4 cut(s) 21, 124, 145, 400
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 2 cut(s) 126, 156
NmuCI GTSAC 1 cut(s) 293
OliI CACNNNNGTG 1 cut(s) 29
PfeI GAWTC 2 cut(s) 115, 365
PflMI CCANNNNNTGG 1 cut(s) 384
PkrI GCNGC 2 cut(s) 181, 184
PmaCI CACGTG 1 cut(s) 323
PmlI CACGTG 1 cut(s) 323
Ppu21I YACGTR 1 cut(s) 323
PspCI CACGTG 1 cut(s) 323
PspN4I GGNNCC 2 cut(s) 126, 156
PspPI GGNCC 1 cut(s) 251
PsuI RGATCY 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 29
SatI GCNGC 2 cut(s) 180, 183
Sau3AI GATC 4 cut(s) 21, 124, 145, 400
Sau96I GGNCC 1 cut(s) 251
SduI GDGCHC 1 cut(s) 487
SetI ASST 9 cut(s) 76, 113, 160, 181, 219, 300, 312, 325, 361
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
SpeI ACTAGT 1 cut(s) 446
Sse9I AATT 2 cut(s) 204, 432
SsiI CCGC 3 cut(s) 137, 182, 288
SspMI CTAG 2 cut(s) 230, 447
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 2 cut(s) 300, 325
TasI AATT 2 cut(s) 204, 432
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 2 cut(s) 115, 365
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 369, 470
TspRI CASTG 1 cut(s) 475
Van91I CCANNNNNTGG 1 cut(s) 384
XapI RAATTY 1 cut(s) 432
XbaI TCTAGA 1 cut(s) 229
XspI CTAG 2 cut(s) 230, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.