RchiOBHm_Chr2g0115891

Nonspecific lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008831
Physical Location & Seq
Reverse (-)
28089279 .. 28090168
890 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48900

Sequence Viewer

Length: 516 bp
ATGCTTGCTCTATCCAAGATGATCACCATTGTGATACTCCTCCTCGGGGTTTCTTGGCCTGCCATTGGTGCACCTTTTAGTCCACCTTTTAGGCCACACTATCCCGAGACTTGTAAAACTACCTTGAATCTGTTGGATCCTTGCTTTCCGCTATATGATCCTTCGGAGCCTACACCGGCTTGCTGTAAAGCTGCGGCGTCTCTCAGCACTCAAGTAATTGCGAAGAAGCTATATGAGTGTCTAGAGGATTTACAAAAGGCAGGGCCTCTGAACTTATCTGCACTTCGTCTTCTGTTCCCCGCCTGTGACGTTTCTGTAAAGCTTCCACCGGCACGTGTCTCGGATGATATGGACTGTTCCCAGTATGAACCTGAAGATTCAAGGGTTGCCACCTATTGGTTATTTTGCTATGATCCAAGCATGGGCTTTTACTGGCAGTATAGAATTCGGTTTTCTACTAGTGTTAAGAACAGATATGGCAGTGAAAACAATAGTGCCCTTGTATCTTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

171

Amino Acids

19.15

Weight (kDa)

5.44

Isoelectric Point (pI)

57.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 396
AciI CCGC 3 cut(s) 149, 194, 300
AclWI GGATC 4 cut(s) 131, 144, 152, 407
AcsI RAATTY 1 cut(s) 444
AcuI CTGAAG 1 cut(s) 393
AcvI CACGTG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 197
AfiI CCNNNNNNNGG 4 cut(s) 46, 65, 396, 422
AflIII ACRYGT 1 cut(s) 334
AgsI TTSAA 3 cut(s) 127, 381, 512
AhlI ACTAGT 1 cut(s) 458
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 3 cut(s) 191, 229, 322
AluI AGCT 3 cut(s) 191, 229, 322
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 3 cut(s) 101, 204, 343
Alw44I GTGCAC 1 cut(s) 69
AlwI GGATC 4 cut(s) 131, 144, 152, 407
Ama87I CYCGRG 2 cut(s) 44, 104
AoxI GGCC 3 cut(s) 56, 92, 263
ApaLI GTGCAC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 2 cut(s) 44, 104
BaeGI GKGCMC 2 cut(s) 73, 499
BamHI GGATCC 1 cut(s) 136
BbrPI CACGTG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 321, 355
BclI TGATCA 1 cut(s) 21
BcoDI GTCTC 3 cut(s) 101, 204, 343
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 2 cut(s) 242, 459
BisI GCNGC 2 cut(s) 192, 195
BlsI GCNGC 2 cut(s) 193, 196
BmeT110I CYCGRG 2 cut(s) 44, 104
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 138, 168
BmrI ACTGGG 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 65, 396, 422
Bse118I RCCGGY 2 cut(s) 175, 328
Bse1I ACTGG 2 cut(s) 361, 437
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 4 cut(s) 46, 65, 396, 422
BseMII CTCAG 1 cut(s) 217
BseNI ACTGG 2 cut(s) 361, 437
BseRI GAGGAG 2 cut(s) 29, 32
BseSI GKGCMC 2 cut(s) 73, 499
BseXI GCAGC 1 cut(s) 178
BsgI GTGCAG 1 cut(s) 264
BshFI GGCC 3 cut(s) 58, 94, 265
BsiHKAI GWGCWC 1 cut(s) 73
BsiHKCI CYCGRG 2 cut(s) 44, 104
BsiSI CCGG 2 cut(s) 176, 329
BslI CCNNNNNNNGG 4 cut(s) 46, 65, 396, 422
BsmAI GTCTC 3 cut(s) 101, 204, 343
BsmBI CGTCTC 1 cut(s) 204
BsnI GGCC 3 cut(s) 58, 94, 265
BsoBI CYCGRG 2 cut(s) 44, 104
Bsp1286I GDGCHC 2 cut(s) 73, 499
Bsp143I GATC 4 cut(s) 21, 136, 157, 412
BspACI CCGC 3 cut(s) 149, 194, 300
BspANI GGCC 3 cut(s) 58, 94, 265
BspCNI CTCAG 1 cut(s) 216
BspLI GGNNCC 2 cut(s) 138, 168
BspPI GGATC 4 cut(s) 131, 144, 152, 407
BsrFI RCCGGY 2 cut(s) 175, 328
BsrI ACTGG 2 cut(s) 361, 437
BssAI RCCGGY 2 cut(s) 175, 328
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 4 cut(s) 21, 136, 157, 412
BssNI GRCGYC 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 356
BstACI GRCGYC 1 cut(s) 197
BstBAI YACGTR 1 cut(s) 335
BstC8I GCNNGC 3 cut(s) 6, 60, 181
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 4 cut(s) 24, 139, 160, 415
BstMAI GTCTC 3 cut(s) 101, 204, 343
BstMBI GATC 4 cut(s) 21, 136, 157, 412
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstSLI GKGCMC 2 cut(s) 73, 499
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 3 cut(s) 58, 94, 265
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 3 cut(s) 6, 60, 181
Cfr10I RCCGGY 2 cut(s) 175, 328
Cfr13I GGNCC 1 cut(s) 263
CseI GACGC 1 cut(s) 186
CviAII CATG 1 cut(s) 421
CviJI RGCY 9 cut(s) 58, 94, 169, 179, 191, 229, 265, 322, 426
CviKI_1 RGCY 9 cut(s) 58, 94, 169, 179, 191, 229, 265, 322, 426
DdeI CTNAG 1 cut(s) 203
DpnI GATC 4 cut(s) 23, 138, 159, 414
DpnII GATC 4 cut(s) 21, 136, 157, 412
Eco57I CTGAAG 1 cut(s) 393
Eco72I CACGTG 1 cut(s) 335
Eco88I CYCGRG 2 cut(s) 44, 104
EcoO109I RGGNCCY 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 444
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 1 cut(s) 424
FatI CATG 1 cut(s) 420
FauI CCCGC 1 cut(s) 307
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 192, 195
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 2 cut(s) 192, 195
FspBI CTAG 2 cut(s) 242, 459
GluI GCNGC 2 cut(s) 192, 195
HaeIII GGCC 3 cut(s) 58, 94, 265
HapII CCGG 2 cut(s) 176, 329
HgaI GACGC 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 320
HinfI GANTC 2 cut(s) 127, 377
HpaII CCGG 2 cut(s) 176, 329
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 71, 83
Hpy188I TCNGA 3 cut(s) 166, 270, 343
Hpy188III TCNNGA 2 cut(s) 104, 242
Hpy8I GTNNAC 2 cut(s) 71, 83
HpyAV CCTTC 1 cut(s) 171
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4IV ACGT 2 cut(s) 309, 334
HpyCH4V TGCA 2 cut(s) 71, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 203
HpySE526I ACGT 2 cut(s) 309, 334
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 21
Kzo9I GATC 4 cut(s) 21, 136, 157, 412
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 8 cut(s) 72, 189, 246, 316, 342, 374, 384, 418
Lsp1109I GCAGC 1 cut(s) 178
MaeI CTAG 2 cut(s) 242, 459
MaeII ACGT 2 cut(s) 309, 334
MaeIII GTNAC 1 cut(s) 305
MalI GATC 4 cut(s) 23, 138, 159, 414
MboI GATC 4 cut(s) 21, 136, 157, 412
MboII GAAGA 3 cut(s) 235, 281, 386
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 2 cut(s) 73, 499
MluCI AATT 2 cut(s) 216, 444
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 4 cut(s) 50, 53, 238, 276
MseI TTAA 1 cut(s) 465
MslI CAYNNNNRTG 1 cut(s) 29
MspI CCGG 2 cut(s) 176, 329
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 4 cut(s) 21, 136, 157, 412
NlaIII CATG 1 cut(s) 424
NlaIV GGNNCC 2 cut(s) 138, 168
NmuCI GTSAC 1 cut(s) 305
OliI CACNNNNGTG 1 cut(s) 29
PfeI GAWTC 2 cut(s) 127, 377
PflMI CCANNNNNTGG 1 cut(s) 396
PkrI GCNGC 2 cut(s) 193, 196
PmaCI CACGTG 1 cut(s) 335
PmlI CACGTG 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 335
PspCI CACGTG 1 cut(s) 335
PspN4I GGNNCC 2 cut(s) 138, 168
PspPI GGNCC 1 cut(s) 263
PsuI RGATCY 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 2 cut(s) 192, 195
Sau3AI GATC 4 cut(s) 21, 136, 157, 412
Sau96I GGNCC 1 cut(s) 263
SduI GDGCHC 2 cut(s) 73, 499
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
SpeI ACTAGT 1 cut(s) 458
Sse9I AATT 2 cut(s) 216, 444
SsiI CCGC 3 cut(s) 149, 194, 300
SspMI CTAG 2 cut(s) 242, 459
TaaI ACNGT 1 cut(s) 356
TaiI ACGT 2 cut(s) 312, 337
TasI AATT 2 cut(s) 216, 444
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 2 cut(s) 127, 377
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TscAI CASTG 1 cut(s) 487
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 381
TspRI CASTG 1 cut(s) 487
Van91I CCANNNNNTGG 1 cut(s) 396
VneI GTGCAC 1 cut(s) 69
XapI RAATTY 1 cut(s) 444
XbaI TCTAGA 1 cut(s) 241
XspI CTAG 2 cut(s) 242, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.