Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008831

Physical Location & Seq

Genomic Coordinates Reverse (-)

13834491 .. 13837364

Gene Structure 2874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g21890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAAGCTAACTACGGTTCAGTTGGGGTTAACGGCGCGCCGCTAACACGCGCCGTGGAGGCCTTGGCTGCTTTGCTGCTCTCGGCTCTTCTCCGAACTCTGGATCCTCTTGCGTTTTTACCCATCAATGGAGCTGGTATTAAAGAAGATCCTCACACTCCATGCCAAGTTAAGCCTGCTGATGCCGAGGGAGATGATGAAGACGAAGACGATGATGGTGGACTTGAAGAAGGCGAAGAGGACTTGTCATCTGAAGAAGGAGAAGAGTATGATAACAAACCCAACAACAATAAGAGTAACTCAAAGAAGGCCCCAGAAGATGAAGCAGGACGTGGGGCTGAAGAAAATGGAGAAGAGGAAGAGGGCGATGAAGAAGATGGTGATGACCAAGAAGATGGCAATGAGGACGACAATGATGAAGATGACGATGATGATGACGACGATGACAATGACGATGGAGGAGAAGAGGATGAGGAAGGAGTCGAGGAGGAGAATGAGGAGGAGGAAGAAGATGAAGATGAGGAAGCACTTCAGCCACCAAAGAAGAGGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.11

Weight (kDa)

4.05

Isoelectric Point (pI)

62.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21880 FvH4_1g21890
rosa_chinensis	RchiOBHm_Chr2g0115891 RchiOBHm_Chr2g0115901
rosa_laevigata	RLG00000018222 RLG00000019453
rosa_multiflora	Rmu_co8053576.1_g000001 Rmu_ssc0000197.1_g000015
rosa_roxburghii	Rroxscaffold_2G00127680 Rroxscaffold_2G00128530 Rroxscaffold_2G00128540
rosa_rugosa	Rorug02G0200700 Rorug02G0200800
rosa_samantha	Rh2AG257600 Rh2AG257700 Rh2BG268700 Rh2BG268800 Rh2CG264200 Rh2CG264300 Rh2DG265900 Rh2DG266000
rosa_wichuraiana	Rw2G020200 Rw2G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	38, 51
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	3 cut(s)	98, 111, 143
AcuI	CTGAAG	3 cut(s)	273, 360, 515
AfiI	CCNNNNNNNGG	2 cut(s)	100, 128
AgsI	TTSAA	1 cut(s)	227
AjiI	CACGTC	1 cut(s)	332
AloI	GAACNNNNNNTCC	2 cut(s)	88, 120
AluBI	AGCT	2 cut(s)	8, 134
AluI	AGCT	2 cut(s)	8, 134
AlwI	GGATC	3 cut(s)	98, 111, 143
AoxI	GGCC	2 cut(s)	60, 309
ApeKI	GCWGC	2 cut(s)	68, 76
AscI	GGCGCGCC	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	528
AspLEI	GCGC	3 cut(s)	38, 40, 53
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	103
BbsI	GAAGAC	2 cut(s)	207, 213
BbvI	GCAGC	2 cut(s)	55, 63
BccI	CCATC	5 cut(s)	131, 209, 371, 389, 449
BceAI	ACGGC	2 cut(s)	38, 49
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	3 cut(s)	41, 69, 77
BlsI	GCNGC	3 cut(s)	42, 70, 78
BmgBI	CACGTC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	105, 312
BmsI	GCATC	1 cut(s)	172
BpiI	GAAGAC	2 cut(s)	207, 213
BsaJI	CCNNGG	3 cut(s)	54, 63, 186
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 128
Bse3DI	GCAATG	1 cut(s)	406
BseDI	CCNNGG	3 cut(s)	54, 63, 186
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	100, 128
BseMI	GCAATG	1 cut(s)	406
BsePI	GCGCGC	1 cut(s)	36
BseRI	GAGGAG	5 cut(s)	474, 500, 503, 512, 515
BseXI	GCAGC	2 cut(s)	55, 63
Bsh1236I	CGCG	2 cut(s)	38, 51
BshFI	GGCC	2 cut(s)	62, 311
BslI	CCNNNNNNNGG	2 cut(s)	100, 128
BsnI	GGCC	2 cut(s)	62, 311
Bsp143I	GATC	2 cut(s)	103, 148
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	2 cut(s)	62, 311
BspFNI	CGCG	2 cut(s)	38, 51
BspLI	GGNNCC	2 cut(s)	105, 312
BspPI	GGATC	3 cut(s)	98, 111, 143
BspQI	GCTCTTC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	406
BssECI	CCNNGG	3 cut(s)	54, 63, 186
BssHII	GCGCGC	1 cut(s)	36
BssMI	GATC	2 cut(s)	103, 148
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	7 cut(s)	93, 231, 258, 348, 354, 459, 539
BstC8I	GCNNGC	2 cut(s)	38, 177
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	2 cut(s)	38, 51
BstHHI	GCGC	3 cut(s)	38, 40, 53
BstKTI	GATC	2 cut(s)	106, 151
BstMBI	GATC	2 cut(s)	103, 148
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 68
BstUI	CGCG	2 cut(s)	38, 51
BstV1I	GCAGC	2 cut(s)	55, 63
BstV2I	GAAGAC	2 cut(s)	207, 213
BstX2I	RGATCY	2 cut(s)	103, 148
BstXI	CCANNNNNNTGG	1 cut(s)	395
BstYI	RGATCY	2 cut(s)	103, 148
BsuRI	GGCC	2 cut(s)	62, 311
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	381
BtrI	CACGTC	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	38, 177
CfoI	GCGC	3 cut(s)	38, 40, 53
Cfr13I	GGNCC	1 cut(s)	310
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	9 cut(s)	8, 62, 68, 86, 134, 175, 311, 338, 535
CviKI_1	RGCY	9 cut(s)	8, 62, 68, 86, 134, 175, 311, 338, 535
DpnI	GATC	2 cut(s)	105, 150
DpnII	GATC	2 cut(s)	103, 148
Eam1104I	CTCTTC	7 cut(s)	93, 231, 258, 348, 354, 459, 539
EarI	CTCTTC	7 cut(s)	93, 231, 258, 348, 354, 459, 539
Eco130I	CCWWGG	1 cut(s)	63
Eco147I	AGGCCT	1 cut(s)	62
Eco57I	CTGAAG	3 cut(s)	273, 360, 515
EcoO109I	RGGNCCY	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	165
FaiI	YATR	2 cut(s)	163, 270
FatI	CATG	1 cut(s)	161
Fnu4HI	GCNGC	3 cut(s)	41, 69, 77
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	3 cut(s)	41, 69, 77
GlaI	GCGC	3 cut(s)	37, 39, 52
GluI	GCNGC	3 cut(s)	41, 69, 77
HaeIII	GGCC	2 cut(s)	62, 311
HhaI	GCGC	3 cut(s)	38, 40, 53
Hin1II	CATG	1 cut(s)	165
Hin6I	GCGC	3 cut(s)	36, 38, 51
HinP1I	GCGC	3 cut(s)	36, 38, 51
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	480
HpaI	GTTAAC	1 cut(s)	31
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	2 cut(s)	31, 221
Hpy188I	TCNGA	2 cut(s)	95, 253
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	2 cut(s)	31, 221
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	4 cut(s)	224, 251, 301, 470
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 68
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	1 cut(s)	165
HspAI	GCGC	3 cut(s)	36, 38, 51
KspAI	GTTAAC	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	103, 148
LguI	GCTCTTC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	5 cut(s)	86, 120, 189, 312, 327
Lsp1109I	GCAGC	2 cut(s)	55, 63
LweI	GCATC	1 cut(s)	172
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	2 cut(s)	105, 150
MboI	GATC	2 cut(s)	103, 148
MflI	RGATCY	2 cut(s)	103, 148
MlyI	GAGTC	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	3 cut(s)	30, 141, 171
MvnI	CGCG	2 cut(s)	38, 51
MwoI	GCNNNNNNNGC	2 cut(s)	59, 68
NdeII	GATC	2 cut(s)	103, 148
NlaIII	CATG	1 cut(s)	165
NlaIV	GGNNCC	2 cut(s)	105, 312
NmeAIII	GCCGAG	2 cut(s)	62, 211
PalAI	GGCGCGCC	1 cut(s)	36
PauI	GCGCGC	1 cut(s)	36
PceI	AGGCCT	1 cut(s)	62
PciSI	GCTCTTC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	528
PkrI	GCNGC	3 cut(s)	42, 70, 78
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PspN4I	GGNNCC	2 cut(s)	105, 312
PspPI	GGNCC	1 cut(s)	310
PsuI	RGATCY	2 cut(s)	103, 148
PteI	GCGCGC	1 cut(s)	36
SapI	GCTCTTC	1 cut(s)	93
SaqAI	TTAA	3 cut(s)	30, 141, 171
SatI	GCNGC	3 cut(s)	41, 69, 77
Sau3AI	GATC	2 cut(s)	103, 148
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	489
SetI	ASST	3 cut(s)	10, 136, 334
SfaNI	GCATC	1 cut(s)	172
SgsI	GGCGCGCC	1 cut(s)	36
SseBI	AGGCCT	1 cut(s)	62
SsiI	CCGC	1 cut(s)	41
StuI	AGGCCT	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	1 cut(s)	483
TauI	GCSGC	1 cut(s)	43
Tru1I	TTAA	3 cut(s)	30, 141, 171
Tru9I	TTAA	3 cut(s)	30, 141, 171
TseI	GCWGC	2 cut(s)	68, 76
TspDTI	ATGAA	5 cut(s)	213, 336, 384, 432, 528
XmnI	GAANNNNTTC	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.