Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000197.1

Orthogroup ID

OG0008831

Physical Location & Seq

Genomic Coordinates Forward (+)

100513 .. 100866

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000197.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgcttgctctatccaagatgatcaccattgtgatactcctcctcggggtttcgtggtctgccattggtgcaccttttaggccacactatcccgagacttgtaaaactaccttgaatctgttggatccttgctttccgctatatgatccttcggagcctacaccggcttgctgtaaagctgcggcgtctctcagcactcaagtaattgcgaagaagctatatgagtgtctagaggatttacaaaaggcagggcctctgaacttatctgcacttcgtcttctgttccccgcctgtgacgtttctgtaaagcttccaccggcacgtgtctcggatgatatggactgttcccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

117

Amino Acids

12.67

Weight (kDa)

5.68

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21880 FvH4_1g21890
rosa_chinensis	RchiOBHm_Chr2g0115891 RchiOBHm_Chr2g0115901
rosa_laevigata	RLG00000018222 RLG00000019453
rosa_multiflora	Rmu_co8053576.1_g000001 Rmu_ssc0000197.1_g000015
rosa_roxburghii	Rroxscaffold_2G00127680 Rroxscaffold_2G00128530 Rroxscaffold_2G00128540
rosa_rugosa	Rorug02G0200700 Rorug02G0200800
rosa_samantha	Rh2AG257600 Rh2AG257700 Rh2BG268700 Rh2BG268800 Rh2CG264200 Rh2CG264300 Rh2DG265900 Rh2DG266000
rosa_wichuraiana	Rw2G020200 Rw2G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	137, 182, 288
AclWI	GGATC	3 cut(s)	119, 132, 140
AcvI	CACGTG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	46
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	115
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	3 cut(s)	179, 217, 310
AluI	AGCT	3 cut(s)	179, 217, 310
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	3 cut(s)	89, 192, 331
Alw44I	GTGCAC	1 cut(s)	69
AlwI	GGATC	3 cut(s)	119, 132, 140
Ama87I	CYCGRG	2 cut(s)	44, 92
AoxI	GGCC	2 cut(s)	80, 251
ApaLI	GTGCAC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	2 cut(s)	44, 92
BaeGI	GKGCMC	1 cut(s)	73
BamHI	GGATCC	1 cut(s)	124
BbrPI	CACGTG	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	166
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BclI	TGATCA	1 cut(s)	21
BcoDI	GTCTC	3 cut(s)	89, 192, 331
BfaI	CTAG	1 cut(s)	230
BisI	GCNGC	2 cut(s)	180, 183
BlsI	GCNGC	2 cut(s)	181, 184
BmeT110I	CYCGRG	2 cut(s)	44, 92
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	126, 156
BmrI	ACTGGG	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	343
BpiI	GAAGAC	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	183
BsaAI	YACGTR	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse118I	RCCGGY	2 cut(s)	163, 316
Bse1I	ACTGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	2 cut(s)	29, 32
BseSI	GKGCMC	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	166
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	2 cut(s)	82, 253
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	2 cut(s)	44, 92
BsiSI	CCGG	2 cut(s)	164, 317
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	3 cut(s)	89, 192, 331
BsmBI	CGTCTC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	82, 253
BsoBI	CYCGRG	2 cut(s)	44, 92
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	3 cut(s)	21, 124, 145
BspACI	CCGC	3 cut(s)	137, 182, 288
BspANI	GGCC	2 cut(s)	82, 253
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	126, 156
BspPI	GGATC	3 cut(s)	119, 132, 140
BsrFI	RCCGGY	2 cut(s)	163, 316
BsrI	ACTGG	1 cut(s)	349
BssAI	RCCGGY	2 cut(s)	163, 316
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	3 cut(s)	21, 124, 145
BssNI	GRCGYC	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	323
BstC8I	GCNNGC	2 cut(s)	6, 169
BstDEI	CTNAG	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	3 cut(s)	24, 127, 148
BstMAI	GTCTC	3 cut(s)	89, 192, 331
BstMBI	GATC	3 cut(s)	21, 124, 145
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstSLI	GKGCMC	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	82, 253
BtsCI	GGATG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	6, 169
Cfr10I	RCCGGY	2 cut(s)	163, 316
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	1 cut(s)	174
CviJI	RGCY	7 cut(s)	82, 157, 167, 179, 217, 253, 310
CviKI_1	RGCY	7 cut(s)	82, 157, 167, 179, 217, 253, 310
DdeI	CTNAG	1 cut(s)	191
DpnI	GATC	3 cut(s)	23, 126, 147
DpnII	GATC	3 cut(s)	21, 124, 145
Eco72I	CACGTG	1 cut(s)	323
Eco88I	CYCGRG	2 cut(s)	44, 92
EcoO109I	RGGNCCY	1 cut(s)	251
Esp3I	CGTCTC	1 cut(s)	192
FaiI	YATR	5 cut(s)	142, 144, 220, 222, 338
FauI	CCCGC	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	180, 183
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	180, 183
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	2 cut(s)	180, 183
HaeIII	GGCC	2 cut(s)	82, 253
HapII	CCGG	2 cut(s)	164, 317
HgaI	GACGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	185
HindIII	AAGCTT	1 cut(s)	308
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	2 cut(s)	164, 317
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	3 cut(s)	154, 258, 331
Hpy188III	TCNNGA	2 cut(s)	92, 230
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	159
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	2 cut(s)	297, 322
HpyCH4V	TGCA	2 cut(s)	71, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	2 cut(s)	297, 322
Hsp92I	GRCGYC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	21
Kzo9I	GATC	3 cut(s)	21, 124, 145
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	4 cut(s)	177, 234, 304, 330
Lsp1109I	GCAGC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	2 cut(s)	297, 322
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	3 cut(s)	23, 126, 147
MboI	GATC	3 cut(s)	21, 124, 145
MboII	GAAGA	2 cut(s)	223, 269
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	4 cut(s)	50, 53, 226, 264
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	2 cut(s)	164, 317
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	3 cut(s)	21, 124, 145
NlaIV	GGNNCC	2 cut(s)	126, 156
NmuCI	GTSAC	1 cut(s)	293
OliI	CACNNNNGTG	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	115
PkrI	GCNGC	2 cut(s)	181, 184
PmaCI	CACGTG	1 cut(s)	323
PmlI	CACGTG	1 cut(s)	323
Ppu21I	YACGTR	1 cut(s)	323
PspCI	CACGTG	1 cut(s)	323
PspN4I	GGNNCC	2 cut(s)	126, 156
PspPI	GGNCC	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	29
SatI	GCNGC	2 cut(s)	180, 183
Sau3AI	GATC	3 cut(s)	21, 124, 145
Sau96I	GGNCC	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	7 cut(s)	76, 113, 181, 219, 300, 312, 325
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	3 cut(s)	137, 182, 288
SspMI	CTAG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	2 cut(s)	300, 325
TasI	AATT	1 cut(s)	204
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	179
Tsp45I	GTSAC	1 cut(s)	293
VneI	GTGCAC	1 cut(s)	69
XbaI	TCTAGA	1 cut(s)	229
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.