Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008831

Physical Location & Seq

Genomic Coordinates Reverse (-)

29491503 .. 29495991

Gene Structure 4489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG257700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTCGGTGTCTTTTTTCCAATTTCGTTTTGATGAGGACGCAAGCGGAGGCAGTGGTGGCGACGAGAGATTAGAATCTTGCTGCTCCCCACAGCAAATCTACCTACGAATCCCTCCCTGCCCGTCCTGCCCTAACTTGACTGGAGAATTACGGGCAGTCACACACCAGAATGAACGCAGCCTCCGCCGCTGTTTTCTAGAGGTTTCCGACCCTCAAACCCGCAGATCTCACTTCCTGGTGTCTGGTTGCCGCAAAATGGAAACTAACTACGGTTCGGTCGGAGTTAACGGCGCGTCGCTAACACGCGCCGTGGAGGCCCTGGCTGCTTTGCTGCTCTCGGCTCTGCTCAGGACCCAGCTCTTGGCTCTGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.61

Weight (kDa)

7.61

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008831)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21880 FvH4_1g21890
rosa_chinensis	RchiOBHm_Chr2g0115891 RchiOBHm_Chr2g0115901
rosa_laevigata	RLG00000018222 RLG00000019453
rosa_multiflora	Rmu_co8053576.1_g000001 Rmu_ssc0000197.1_g000015
rosa_roxburghii	Rroxscaffold_2G00127680 Rroxscaffold_2G00128530 Rroxscaffold_2G00128540
rosa_rugosa	Rorug02G0200700 Rorug02G0200800
rosa_samantha	Rh2AG257600 Rh2AG257700 Rh2BG268700 Rh2BG268800 Rh2CG264200 Rh2CG264300 Rh2DG265900 Rh2DG266000
rosa_wichuraiana	Rw2G020200 Rw2G020210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	361
AccII	CGCG	2 cut(s)	293, 306
AciI	CCGC	5 cut(s)	45, 184, 187, 220, 250
AfiI	CCNNNNNNNGG	2 cut(s)	256, 361
AjnI	CCWGG	2 cut(s)	234, 318
AloI	GAACNNNNNNTCC	2 cut(s)	165, 197
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
AoxI	GGCC	1 cut(s)	315
ApeKI	GCWGC	4 cut(s)	81, 177, 323, 331
AspLEI	GCGC	2 cut(s)	293, 308
AspS9I	GGNCC	2 cut(s)	316, 351
AvaII	GGWCC	1 cut(s)	351
BbvI	GCAGC	4 cut(s)	68, 189, 310, 318
BceAI	ACGGC	2 cut(s)	293, 304
BciT130I	CCWGG	2 cut(s)	236, 320
BfaI	CTAG	1 cut(s)	197
BglI	GCCNNNNNGGC	1 cut(s)	314
BglII	AGATCT	1 cut(s)	224
BisI	GCNGC	6 cut(s)	82, 178, 187, 250, 324, 332
BlsI	GCNGC	6 cut(s)	83, 179, 188, 251, 325, 333
Bme1390I	CCNGG	2 cut(s)	236, 320
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	316, 351
BmiI	GGNNCC	1 cut(s)	353
BmrFI	CCNGG	2 cut(s)	236, 320
BpmI	CTGGAG	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	309, 318
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 361
Bse1I	ACTGG	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	236, 320
BseDI	CCNNGG	2 cut(s)	309, 318
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	256, 361
BseMII	CTCAG	1 cut(s)	361
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	4 cut(s)	68, 189, 310, 318
BseYI	CCCAGC	1 cut(s)	354
Bsh1236I	CGCG	2 cut(s)	293, 306
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	317
BsiEI	CGRYCG	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	256, 361
BsnI	GGCC	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	224
BspACI	CCGC	5 cut(s)	45, 184, 187, 220, 250
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	360
BspFNI	CGCG	2 cut(s)	293, 306
BspLI	GGNNCC	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	309, 318
BssMI	GATC	1 cut(s)	224
Bst2UI	CCWGG	2 cut(s)	236, 320
Bst4CI	ACNGT	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	347
BstDSI	CCRYGG	1 cut(s)	309
BstFNI	CGCG	2 cut(s)	293, 306
BstHHI	GCGC	2 cut(s)	293, 308
BstKTI	GATC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	224
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	6 cut(s)	57, 126, 183, 186, 314, 323
BstNI	CCWGG	2 cut(s)	236, 320
BstSCI	CCNGG	2 cut(s)	234, 318
BstUI	CGCG	2 cut(s)	293, 306
BstV1I	GCAGC	4 cut(s)	68, 189, 310, 318
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	2 cut(s)	293, 308
Cfr13I	GGNCC	2 cut(s)	316, 351
CseI	GACGC	2 cut(s)	47, 282
CviJI	RGCY	6 cut(s)	180, 317, 323, 341, 358, 365
CviKI_1	RGCY	6 cut(s)	180, 317, 323, 341, 358, 365
DdeI	CTNAG	1 cut(s)	347
DpnI	GATC	1 cut(s)	226
DpnII	GATC	1 cut(s)	224
EciI	GGCGGA	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	351
EcoO109I	RGGNCCY	2 cut(s)	316, 351
EcoRII	CCWGG	2 cut(s)	234, 318
FaiI	YATR	1 cut(s)	373
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	6 cut(s)	82, 178, 187, 250, 324, 332
Fsp4HI	GCNGC	6 cut(s)	82, 178, 187, 250, 324, 332
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	2 cut(s)	292, 307
GluI	GCNGC	6 cut(s)	82, 178, 187, 250, 324, 332
GsaI	CCCAGC	1 cut(s)	358
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	317
HgaI	GACGC	2 cut(s)	47, 282
HhaI	GCGC	2 cut(s)	293, 308
Hin6I	GCGC	2 cut(s)	291, 306
HinP1I	GCGC	2 cut(s)	291, 306
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	74, 108
HpaI	GTTAAC	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	208, 281
Hpy188III	TCNNGA	2 cut(s)	197, 349
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	2 cut(s)	65, 298
HpyCH4III	ACNGT	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	6 cut(s)	57, 126, 183, 186, 314, 323
HpyF3I	CTNAG	1 cut(s)	347
HspAI	GCGC	2 cut(s)	291, 306
KspAI	GTTAAC	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	89
Lsp1109I	GCAGC	4 cut(s)	68, 189, 310, 318
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	226
MboI	GATC	1 cut(s)	224
MflI	RGATCY	1 cut(s)	224
MluCI	AATT	2 cut(s)	20, 146
MmeI	TCCRAC	2 cut(s)	231, 259
MnlI	CCTC	7 cut(s)	28, 41, 123, 191, 193, 222, 307
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	189
MspR9I	CCNGG	2 cut(s)	236, 320
MvaI	CCWGG	2 cut(s)	236, 320
MvnI	CGCG	2 cut(s)	293, 306
MwoI	GCNNNNNNNGC	6 cut(s)	57, 126, 183, 186, 314, 323
NdeII	GATC	1 cut(s)	224
NlaIV	GGNNCC	1 cut(s)	353
NmeAIII	GCCGAG	1 cut(s)	317
NmuCI	GTSAC	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	74, 108
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	6 cut(s)	83, 179, 188, 251, 325, 333
PpuMI	RGGWCCY	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	234, 318
PspFI	CCCAGC	1 cut(s)	354
PspGI	CCWGG	2 cut(s)	234, 318
PspN4I	GGNNCC	1 cut(s)	353
PspPI	GGNCC	2 cut(s)	316, 351
PspPPI	RGGWCCY	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	6 cut(s)	82, 178, 187, 250, 324, 332
Sau3AI	GATC	1 cut(s)	224
Sau96I	GGNCC	2 cut(s)	316, 351
ScrFI	CCNGG	2 cut(s)	236, 320
SetI	ASST	3 cut(s)	105, 204, 360
SinI	GGWCC	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	20, 146
SsiI	CCGC	5 cut(s)	45, 184, 187, 220, 250
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	234, 318
TaaI	ACNGT	1 cut(s)	272
TaqII	GACCGA	1 cut(s)	265
TasI	AATT	2 cut(s)	20, 146
TauI	GCSGC	2 cut(s)	189, 252
TfiI	GAWTC	2 cut(s)	74, 108
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	4 cut(s)	81, 177, 323, 331
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	58
Van91I	CCANNNNNTGG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	351
XbaI	TCTAGA	1 cut(s)	196
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.