RchiOBHm_Chr2g0115901

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008831
Physical Location & Seq
Reverse (-)
28090895 .. 28093769
2875 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48901

Sequence Viewer

Length: 903 bp
ATGATTAAAAGCTCCTTAAAACCCAAACTTGTCCTTACCTACTCTCCCGGGCAGCTCCCCACAGCAAATCTACCTACGAATCCCTCCCTGCCCGTCCTGCCCGAACTTGACTGGAGAATTACGGGCAGTCACACGCCAGTACTCTCTCTCTGTCTCTCTGCTCCCTTCTTCTCTCTTTTCTCTCTGATATTTTCCCCATCTTGTTTCTCTCTGTGTCTCTTCGATCACGATCCTACGGTCAGGAATGAACGCAGCCTCCGCCGCTGTTTTCTAGAGGTTTCCGACCCTCAAACCCGCAGATCTCACTTCCTGGTGTCTGGTTGCCGCAAAATGGAAATTAACTACGGTTCGGTCGGAGTCAACGGCGCGTCGCTAACACGCGCCGTGGAGGCCCTGGCTGCTTTGCTGCTCTCGGCTCTGCTCAGGACCCAGCTCTTGGCTCTGGATCCCCTTGCGTTTTTACCTAACAACGGAGCTGGTATTAAAGAAGATCCTCACACTACATCCCAAGCTAAGCCAGCTGATGCTGAGGGAGATGATGAAGATGATGATGGTGATGGTGGACTGGAAGAAGGTGAAGAGGACTTGTCATCTGAAGAAGGAGAAGAGTATGGCAACAAACCGAACAACAATAAGAGTAACTCAAAGAAGGCTCCAGAGGGTGGAGCAGGAGGTGGGGCTGAAGAGAATGGAGAAGAGGAAGAGGGCGATGAAGAAGATGGTGATGACCAAGAAGATGACAATGAGGACGACAATGATGAAGAGGATGATGATGACGATGACGACGATGACAATGACGATGGCGGAGAAGAGGATGAGGAAGGAGCCGACGAGGAGAATGAGGAGGAGGAAGAAGATGAAGATGAGGAAGCACTTCAGCCCCCAAAGAAGAGGAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

32.66

Weight (kDa)

4.05

Isoelectric Point (pI)

62.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 436, 662
AccII CGCG 2 cut(s) 368, 381
AciI CCGC 5 cut(s) 259, 262, 295, 325, 804
AclWI GGATC 4 cut(s) 224, 440, 453, 485
AcuI CTGAAG 3 cut(s) 615, 702, 860
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 4 cut(s) 331, 436, 470, 662
AjnI CCWGG 2 cut(s) 309, 393
AloI GAACNNNNNNTCC 2 cut(s) 240, 272
AluBI AGCT 6 cut(s) 12, 55, 433, 476, 512, 521
AluI AGCT 6 cut(s) 12, 55, 433, 476, 512, 521
Alw26I GTCTC 2 cut(s) 158, 221
AlwI GGATC 4 cut(s) 224, 440, 453, 485
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 1 cut(s) 390
ApeKI GCWGC 4 cut(s) 52, 252, 398, 406
Asp700I GAANNNNTTC 1 cut(s) 873
AspLEI GCGC 2 cut(s) 368, 383
AspS9I GGNCC 2 cut(s) 391, 426
AsuC2I CCSGG 2 cut(s) 48, 49
AsuHPI GGTGA 3 cut(s) 566, 587, 734
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 1 cut(s) 426
BamHI GGATCC 1 cut(s) 445
BbvCI CCTCAGC 1 cut(s) 528
BbvI GCAGC 4 cut(s) 64, 264, 385, 393
BccI CCATC 5 cut(s) 205, 545, 551, 713, 794
BceAI ACGGC 2 cut(s) 368, 379
BciT130I CCWGG 2 cut(s) 311, 395
BcnI CCSGG 2 cut(s) 48, 49
BcoDI GTCTC 2 cut(s) 158, 221
BfaI CTAG 1 cut(s) 272
BglI GCCNNNNNGGC 1 cut(s) 389
BglII AGATCT 1 cut(s) 299
BisI GCNGC 6 cut(s) 53, 253, 262, 325, 399, 407
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 6 cut(s) 54, 254, 263, 326, 400, 408
BmcAI AGTACT 1 cut(s) 141
Bme1390I CCNGG 4 cut(s) 48, 49, 311, 395
Bme18I GGWCC 1 cut(s) 426
BmeT110I CYCGRG 1 cut(s) 47
BmgT120I GGNCC 2 cut(s) 391, 426
BmiI GGNNCC 4 cut(s) 428, 447, 654, 826
BmrFI CCNGG 4 cut(s) 48, 49, 311, 395
BmsI GCATC 1 cut(s) 514
BpmI CTGGAG 2 cut(s) 133, 639
Bpu10I CCTNAGC 2 cut(s) 422, 528
Bpu1102I GCTNAGC 1 cut(s) 513
BpuMI CCSGG 2 cut(s) 48, 49
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 3 cut(s) 47, 384, 393
BsaXI ACNNNNNCTCC 4 cut(s) 28, 58, 240, 270
Bsc4I CCNNNNNNNGG 4 cut(s) 331, 436, 470, 662
Bse1I ACTGG 3 cut(s) 116, 137, 570
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 2 cut(s) 311, 395
BseDI CCNNGG 3 cut(s) 47, 384, 393
BseGI GGATG 3 cut(s) 503, 772, 820
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 4 cut(s) 331, 436, 470, 662
BseMII CTCAG 2 cut(s) 436, 519
BseNI ACTGG 3 cut(s) 116, 137, 570
BseRI GAGGAG 3 cut(s) 848, 857, 860
BseXI GCAGC 4 cut(s) 64, 264, 385, 393
BseYI CCCAGC 1 cut(s) 429
Bsh1236I CGCG 2 cut(s) 368, 381
Bsh1285I CGRYCG 1 cut(s) 354
BshFI GGCC 1 cut(s) 392
BsiEI CGRYCG 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 4 cut(s) 331, 436, 470, 662
BsmAI GTCTC 2 cut(s) 158, 221
BsnI GGCC 1 cut(s) 392
BsoBI CYCGRG 1 cut(s) 47
Bsp143I GATC 5 cut(s) 223, 229, 299, 445, 490
Bsp1720I GCTNAGC 1 cut(s) 513
BspACI CCGC 5 cut(s) 259, 262, 295, 325, 804
BspANI GGCC 1 cut(s) 392
BspCNI CTCAG 2 cut(s) 435, 520
BspFNI CGCG 2 cut(s) 368, 381
BspLI GGNNCC 4 cut(s) 428, 447, 654, 826
BspPI GGATC 4 cut(s) 224, 440, 453, 485
BsrI ACTGG 3 cut(s) 116, 137, 570
BssECI CCNNGG 3 cut(s) 47, 384, 393
BssMI GATC 5 cut(s) 223, 229, 299, 445, 490
Bst2UI CCWGG 2 cut(s) 311, 395
Bst4CI ACNGT 2 cut(s) 238, 347
Bst6I CTCTTC 9 cut(s) 224, 573, 600, 678, 690, 696, 756, 804, 884
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 3 cut(s) 422, 513, 528
BstDSI CCRYGG 1 cut(s) 384
BstF5I GGATG 3 cut(s) 503, 772, 820
BstFNI CGCG 2 cut(s) 368, 381
BstHHI GCGC 2 cut(s) 368, 383
BstKTI GATC 5 cut(s) 226, 232, 302, 448, 493
BstMAI GTCTC 2 cut(s) 158, 221
BstMBI GATC 5 cut(s) 223, 229, 299, 445, 490
BstMCI CGRYCG 1 cut(s) 354
BstMWI GCNNNNNNNGC 6 cut(s) 97, 258, 261, 389, 398, 518
BstNI CCWGG 2 cut(s) 311, 395
BstSCI CCNGG 4 cut(s) 46, 47, 309, 393
BstUI CGCG 2 cut(s) 368, 381
BstV1I GCAGC 4 cut(s) 64, 264, 385, 393
BstX2I RGATCY 3 cut(s) 299, 445, 490
BstYI RGATCY 3 cut(s) 299, 445, 490
BsuRI GGCC 1 cut(s) 392
BtgI CCRYGG 1 cut(s) 384
BtgZI GCGATG 1 cut(s) 723
BtsCI GGATG 3 cut(s) 503, 772, 820
Cac8I GCNNGC 1 cut(s) 519
CfoI GCGC 2 cut(s) 368, 383
Cfr13I GGNCC 2 cut(s) 391, 426
Cfr9I CCCGGG 1 cut(s) 47
CseI GACGC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 140
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 3 cut(s) 422, 513, 528
DpnI GATC 5 cut(s) 225, 231, 301, 447, 492
DpnII GATC 5 cut(s) 223, 229, 299, 445, 490
Eam1104I CTCTTC 9 cut(s) 224, 573, 600, 678, 690, 696, 756, 804, 884
EarI CTCTTC 9 cut(s) 224, 573, 600, 678, 690, 696, 756, 804, 884
EciI GGCGGA 2 cut(s) 248, 819
Eco47I GGWCC 1 cut(s) 426
Eco57I CTGAAG 3 cut(s) 615, 702, 860
Eco88I CYCGRG 1 cut(s) 47
EcoO109I RGGNCCY 2 cut(s) 391, 426
EcoRII CCWGG 2 cut(s) 309, 393
FaiI YATR 1 cut(s) 612
FauI CCCGC 1 cut(s) 302
Fnu4HI GCNGC 6 cut(s) 53, 253, 262, 325, 399, 407
FokI GGATG 3 cut(s) 490, 779, 827
Fsp4HI GCNGC 6 cut(s) 53, 253, 262, 325, 399, 407
FspBI CTAG 1 cut(s) 272
GlaI GCGC 2 cut(s) 367, 382
GluI GCNGC 6 cut(s) 53, 253, 262, 325, 399, 407
GsaI CCCAGC 1 cut(s) 433
GsuI CTGGAG 2 cut(s) 133, 639
HaeIII GGCC 1 cut(s) 392
HapII CCGG 1 cut(s) 48
HgaI GACGC 1 cut(s) 357
HhaI GCGC 2 cut(s) 368, 383
Hin6I GCGC 2 cut(s) 366, 381
HinP1I GCGC 2 cut(s) 366, 381
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 2 cut(s) 79, 357
HpaII CCGG 1 cut(s) 48
HphI GGTGA 3 cut(s) 566, 587, 734
Hpy166II GTNNAC 2 cut(s) 361, 563
Hpy188I TCNGA 4 cut(s) 186, 283, 356, 595
Hpy188III TCNNGA 6 cut(s) 227, 241, 272, 424, 443, 656
Hpy8I GTNNAC 2 cut(s) 361, 563
Hpy99I CGWCG 3 cut(s) 373, 788, 833
HpyAV CCTTC 5 cut(s) 175, 566, 593, 643, 815
HpyCH4III ACNGT 2 cut(s) 238, 347
HpyF10VI GCNNNNNNNGC 6 cut(s) 97, 258, 261, 389, 398, 518
HpyF3I CTNAG 3 cut(s) 422, 513, 528
HspAI GCGC 2 cut(s) 366, 381
Kzo9I GATC 5 cut(s) 223, 229, 299, 445, 490
LmnI GCTCC 7 cut(s) 17, 60, 166, 473, 658, 665, 824
Lsp1109I GCAGC 4 cut(s) 64, 264, 385, 393
LweI GCATC 1 cut(s) 514
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 128, 638
MalI GATC 5 cut(s) 225, 231, 301, 447, 492
MboI GATC 5 cut(s) 223, 229, 299, 445, 490
MflI RGATCY 3 cut(s) 299, 445, 490
MluCI AATT 2 cut(s) 117, 336
MlyI GAGTC 1 cut(s) 366
MmeI TCCRAC 2 cut(s) 306, 334
MroXI GAANNNNTTC 1 cut(s) 873
MseI TTAA 4 cut(s) 6, 17, 339, 483
MspA1I CMGCKG 2 cut(s) 264, 521
MspI CCGG 1 cut(s) 48
MspR9I CCNGG 4 cut(s) 48, 49, 311, 395
MvaI CCWGG 2 cut(s) 311, 395
MvnI CGCG 2 cut(s) 368, 381
MwoI GCNNNNNNNGC 6 cut(s) 97, 258, 261, 389, 398, 518
NciI CCSGG 2 cut(s) 48, 49
NdeII GATC 5 cut(s) 223, 229, 299, 445, 490
NlaIV GGNNCC 4 cut(s) 428, 447, 654, 826
NmeAIII GCCGAG 1 cut(s) 392
NmuCI GTSAC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 783
PdmI GAANNNNTTC 1 cut(s) 873
PfeI GAWTC 1 cut(s) 79
PflMI CCANNNNNTGG 2 cut(s) 436, 662
PkrI GCNGC 6 cut(s) 54, 254, 263, 326, 400, 408
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PpuMI RGGWCCY 1 cut(s) 426
Psp5II RGGWCCY 1 cut(s) 426
Psp6I CCWGG 2 cut(s) 309, 393
PspFI CCCAGC 1 cut(s) 429
PspGI CCWGG 2 cut(s) 309, 393
PspN4I GGNNCC 4 cut(s) 428, 447, 654, 826
PspPI GGNCC 2 cut(s) 391, 426
PspPPI RGGWCCY 1 cut(s) 426
PsuI RGATCY 3 cut(s) 299, 445, 490
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SaqAI TTAA 4 cut(s) 6, 17, 339, 483
SatI GCNGC 6 cut(s) 53, 253, 262, 325, 399, 407
Sau3AI GATC 5 cut(s) 223, 229, 299, 445, 490
Sau96I GGNCC 2 cut(s) 391, 426
ScaI AGTACT 1 cut(s) 141
SchI GAGTC 1 cut(s) 366
ScrFI CCNGG 4 cut(s) 48, 49, 311, 395
SfaNI GCATC 1 cut(s) 514
SinI GGWCC 1 cut(s) 426
SmaI CCCGGG 1 cut(s) 49
Sse9I AATT 2 cut(s) 117, 336
SsiI CCGC 5 cut(s) 259, 262, 295, 325, 804
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 4 cut(s) 46, 47, 309, 393
TaaI ACNGT 2 cut(s) 238, 347
TaqI TCGA 1 cut(s) 222
TaqII GACCGA 1 cut(s) 340
TasI AATT 2 cut(s) 117, 336
TatI WGTACW 1 cut(s) 139
TauI GCSGC 2 cut(s) 264, 327
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 4 cut(s) 6, 17, 339, 483
Tru9I TTAA 4 cut(s) 6, 17, 339, 483
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 4 cut(s) 52, 252, 398, 406
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 5 cut(s) 261, 555, 726, 774, 873
TspGWI ACGGA 1 cut(s) 486
TspMI CCCGGG 1 cut(s) 47
Van91I CCANNNNNTGG 2 cut(s) 436, 662
VpaK11BI GGWCC 1 cut(s) 426
XbaI TCTAGA 1 cut(s) 271
XmaI CCCGGG 1 cut(s) 47
XmnI GAANNNNTTC 1 cut(s) 873
XspI CTAG 1 cut(s) 272
ZrmI AGTACT 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.