Rh2CG264300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0008831
Physical Location & Seq
Reverse (-)
28337721 .. 28340318
2598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG264300.1

Sequence Viewer

Length: 573 bp
ATGGAAATTAACTACGGTTCGGTCGGAGTCAACGGCGCGTCGCTAACACGCGCCGTGGAGGCCCTGGCTGCTTTGCTGCTCTCGGCTCTGCTCAGGACCCAGCTCTTGGCTCTGGATCCCCTTGCGTTTTTACCTAACAACGGAGCTGGTATTAAAGAAGATCCTCACACTACATCCCAAGCTAAGCCAGCTGATGCTGAGGGAGATGATGAAGATGATGATGGTGATGGTGGACTGGAAGAAGGTGAAGAGGACTTGTCATCTGAAGAAGGAGAAGAGTATGGCAACAAACCGAACAACAATAAGAGTAACTCAAAGAAGGCTCCAGAGGGTGGAGCAGGAGGTGGGGCTGAAGAGAATGGAGAAGAGGAAGAGGGCGATGAAGAAGATGGTGATGACCAAGAAGATGACAATGAGGACGACAATGATGAAGAGGATGATGATGACGATGACGACGATGACAATGACGATGGCGGAGAAGAGGATGAGGAAGGAGCCGACGAGGAGAATGAGGAGGAGGAAGAAGATGAAGATGAGGAAGCACTTCAGCCCCCAAAGAAGAGGAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

20.32

Weight (kDa)

4.05

Isoelectric Point (pI)

60.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 106, 332
AccII CGCG 2 cut(s) 38, 51
AciI CCGC 1 cut(s) 474
AclWI GGATC 3 cut(s) 110, 123, 155
AcuI CTGAAG 3 cut(s) 285, 372, 530
AfiI CCNNNNNNNGG 3 cut(s) 106, 140, 332
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 4 cut(s) 103, 146, 182, 191
AluI AGCT 4 cut(s) 103, 146, 182, 191
AlwI GGATC 3 cut(s) 110, 123, 155
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 68, 76
Asp700I GAANNNNTTC 1 cut(s) 543
AspLEI GCGC 2 cut(s) 38, 53
AspS9I GGNCC 2 cut(s) 61, 96
AsuHPI GGTGA 3 cut(s) 236, 257, 404
AvaII GGWCC 1 cut(s) 96
BamHI GGATCC 1 cut(s) 115
BbvCI CCTCAGC 1 cut(s) 198
BbvI GCAGC 2 cut(s) 55, 63
BccI CCATC 4 cut(s) 215, 221, 383, 464
BceAI ACGGC 2 cut(s) 38, 49
BciT130I CCWGG 1 cut(s) 65
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 2 cut(s) 69, 77
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 2 cut(s) 70, 78
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 96
BmgT120I GGNCC 2 cut(s) 61, 96
BmiI GGNNCC 4 cut(s) 98, 117, 324, 496
BmrFI CCNGG 1 cut(s) 65
BmsI GCATC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 309
Bpu10I CCTNAGC 2 cut(s) 92, 198
Bpu1102I GCTNAGC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 54, 63
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 140, 332
Bse1I ACTGG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 65
BseDI CCNNGG 2 cut(s) 54, 63
BseGI GGATG 3 cut(s) 173, 442, 490
BseLI CCNNNNNNNGG 3 cut(s) 106, 140, 332
BseMII CTCAG 2 cut(s) 106, 189
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 3 cut(s) 518, 527, 530
BseXI GCAGC 2 cut(s) 55, 63
BseYI CCCAGC 1 cut(s) 99
Bsh1236I CGCG 2 cut(s) 38, 51
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 1 cut(s) 62
BsiEI CGRYCG 1 cut(s) 24
BslI CCNNNNNNNGG 3 cut(s) 106, 140, 332
BsnI GGCC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 115, 160
Bsp1720I GCTNAGC 1 cut(s) 183
BspACI CCGC 1 cut(s) 474
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 2 cut(s) 105, 190
BspFNI CGCG 2 cut(s) 38, 51
BspLI GGNNCC 4 cut(s) 98, 117, 324, 496
BspPI GGATC 3 cut(s) 110, 123, 155
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 54, 63
BssMI GATC 2 cut(s) 115, 160
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 17
Bst6I CTCTTC 8 cut(s) 243, 270, 348, 360, 366, 426, 474, 554
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 3 cut(s) 92, 183, 198
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 3 cut(s) 173, 442, 490
BstFNI CGCG 2 cut(s) 38, 51
BstHHI GCGC 2 cut(s) 38, 53
BstKTI GATC 2 cut(s) 118, 163
BstMBI GATC 2 cut(s) 115, 160
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 3 cut(s) 59, 68, 188
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstUI CGCG 2 cut(s) 38, 51
BstV1I GCAGC 2 cut(s) 55, 63
BstX2I RGATCY 2 cut(s) 115, 160
BstYI RGATCY 2 cut(s) 115, 160
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 393
BtsCI GGATG 3 cut(s) 173, 442, 490
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 2 cut(s) 38, 53
Cfr13I GGNCC 2 cut(s) 61, 96
CseI GACGC 1 cut(s) 27
DdeI CTNAG 3 cut(s) 92, 183, 198
DpnI GATC 2 cut(s) 117, 162
DpnII GATC 2 cut(s) 115, 160
Eam1104I CTCTTC 8 cut(s) 243, 270, 348, 360, 366, 426, 474, 554
EarI CTCTTC 8 cut(s) 243, 270, 348, 360, 366, 426, 474, 554
EciI GGCGGA 1 cut(s) 489
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 3 cut(s) 285, 372, 530
EcoO109I RGGNCCY 2 cut(s) 61, 96
EcoRII CCWGG 1 cut(s) 63
FaiI YATR 1 cut(s) 282
Fnu4HI GCNGC 2 cut(s) 69, 77
FokI GGATG 3 cut(s) 160, 449, 497
Fsp4HI GCNGC 2 cut(s) 69, 77
GlaI GCGC 2 cut(s) 37, 52
GluI GCNGC 2 cut(s) 69, 77
GsaI CCCAGC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 62
HgaI GACGC 1 cut(s) 27
HhaI GCGC 2 cut(s) 38, 53
Hin6I GCGC 2 cut(s) 36, 51
HinP1I GCGC 2 cut(s) 36, 51
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 1 cut(s) 27
HphI GGTGA 3 cut(s) 236, 257, 404
Hpy166II GTNNAC 2 cut(s) 31, 233
Hpy188I TCNGA 2 cut(s) 26, 265
Hpy188III TCNNGA 3 cut(s) 94, 113, 326
Hpy8I GTNNAC 2 cut(s) 31, 233
Hpy99I CGWCG 3 cut(s) 43, 458, 503
HpyAV CCTTC 4 cut(s) 236, 263, 313, 485
HpyCH4III ACNGT 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 68, 188
HpyF3I CTNAG 3 cut(s) 92, 183, 198
HspAI GCGC 2 cut(s) 36, 51
Kzo9I GATC 2 cut(s) 115, 160
LmnI GCTCC 4 cut(s) 143, 328, 335, 494
Lsp1109I GCAGC 2 cut(s) 55, 63
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 1 cut(s) 308
MalI GATC 2 cut(s) 117, 162
MboI GATC 2 cut(s) 115, 160
MflI RGATCY 2 cut(s) 115, 160
MluCI AATT 1 cut(s) 6
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 4
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 2 cut(s) 9, 153
MspA1I CMGCKG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MvnI CGCG 2 cut(s) 38, 51
MwoI GCNNNNNNNGC 3 cut(s) 59, 68, 188
NdeII GATC 2 cut(s) 115, 160
NlaIV GGNNCC 4 cut(s) 98, 117, 324, 496
NmeAIII GCCGAG 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 453
PdmI GAANNNNTTC 1 cut(s) 543
PflMI CCANNNNNTGG 2 cut(s) 106, 332
PkrI GCNGC 2 cut(s) 70, 78
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PpuMI RGGWCCY 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 4 cut(s) 98, 117, 324, 496
PspPI GGNCC 2 cut(s) 61, 96
PspPPI RGGWCCY 1 cut(s) 96
PsuI RGATCY 2 cut(s) 115, 160
PvuII CAGCTG 1 cut(s) 191
SaqAI TTAA 2 cut(s) 9, 153
SatI GCNGC 2 cut(s) 69, 77
Sau3AI GATC 2 cut(s) 115, 160
Sau96I GGNCC 2 cut(s) 61, 96
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 65
SetI ASST 7 cut(s) 105, 136, 148, 184, 193, 247, 346
SfaNI GCATC 1 cut(s) 184
SinI GGWCC 1 cut(s) 96
Sse9I AATT 1 cut(s) 6
SsiI CCGC 1 cut(s) 474
StyD4I CCNGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 17
TaqII GACCGA 1 cut(s) 10
TasI AATT 1 cut(s) 6
Tru1I TTAA 2 cut(s) 9, 153
Tru9I TTAA 2 cut(s) 9, 153
TseI GCWGC 2 cut(s) 68, 76
TspDTI ATGAA 4 cut(s) 225, 396, 444, 543
TspGWI ACGGA 1 cut(s) 156
Van91I CCANNNNNTGG 2 cut(s) 106, 332
VpaK11BI GGWCC 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.