FvH4_1g24470

SAL1 phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0008514
Physical Location & Seq
Forward (+)
16309924 .. 16316184
6261 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24470.t6

Sequence Viewer

Length: 1185 bp
ATGGCTATACATTGCTTAAGAGCAGTACCCAAAATTCCGCATCTTTCAAACCCCAAAATCACAGTCTCACACTCTCTCTTCTTCTCTTCCAACTCCAAACCTAAAAGGGTCTTTTCACCAATTCGAGCTTCCATGTCTTACGAGAAGGAGCTCGCTGCTGCCAAGAAAGCTGCCTCCGTCGCCGCTCGCCTCTGCCAGAAGGTACAACAGGCGCTGCTGCAGTCAGATGTTCATTCAAAATCAGATAAAAGTCCTGTCACAGTGGCCGATTATGGTTCACAGGCACTTGTTAGTTTTGTACTGGAAAGGGAATTTCCTTCAGAATCATTCTCTCTAGTAGCTGAGGAGGATTCAGGAGATCTTCGAATAGACAGTGGGAGGGAAACACTAGAACGCATCACAACACTTGTCAATGATACTCTCGCCAATAGTGACAGTTATAATGATGCTAATTTAACCACCAAAGATGTGCTCAGGGCTATTGACAATGGCAAATCTGAAGGTGGTTCTTGTGGCCGGCACTGGGTTTTAGATCCCATAGATGGTACCAAAGGGTTTCTTAGAGGAGGCCAGTATGCCATAGCATTAGCATTACTGGATGAAGGAAAAGTTGTGTTGGGAGTCCTGGCCTGTCCAAATCTTCCACTGGCGTCCATTAGCGGTGAGAATCAACATACTTCACATGATAAAATCGGTTGCCTTTTCTTTGCAAAACTCGGTGCAGGAACATTTATGCAGCCATTGGATGGTTCATCACCGCTGAAGGTGCATGTCAGTGCTACTGAAAATCCTGAAGACGCTTCATTATTTGAATCTTATGAAGCAGCACACTCCTTGCATGGCCTGTCTAGCACTATTGCCAAGAAACTTGGAGTTAAAGCGCCACCGGTTAGAATTGACAGCCAGGCAAAGTATGGGGCACTTTCCAGAGGAGATGGAGCAATATATCTTCGTTTCCCCCATAAAGGATATCGTGAGAAAATATGGGATCATGCCGCTGGGTGCATTGTTGTTACTGAAGCTGGGGGTGTAGTCACAGATGCTGTAGGAAATCCATTGGACTTTTCAAAAGGGAGGTATCTCGATCTTGAAGGTGGCATAATTGTTGCCAACCAGAAATTGATGCCATCACTCTTGAAGGCAGTTAAAGAATCCTTGGAGGAAGAGAGAGCTTCATCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko00920 ko01100 ko01120 ko04070 map00562 map00920 map01100 map01120 map04070
Pfam Domains
Protein Families
Inositol_P

Protein Analysis

395

Amino Acids

42.24

Weight (kDa)

6.64

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 36 - 339 8.6e-47 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 441
Acc65I GGTACC 1 cut(s) 545
AccB1I GGYRCC 1 cut(s) 545
AccB7I CCANNNNNTGG 1 cut(s) 746
AccBSI CCGCTC 1 cut(s) 185
AciI CCGC 5 cut(s) 38, 183, 660, 758, 996
AclWI GGATC 2 cut(s) 527, 996
AcoI YGGCCR 2 cut(s) 264, 514
AcsI RAATTY 2 cut(s) 33, 311
AcuI CTGAAG 5 cut(s) 303, 519, 782, 813, 1038
AcyI GRCGYC 1 cut(s) 650
AfaI GTAC 4 cut(s) 27, 204, 300, 547
AfiI CCNNNNNNNGG 4 cut(s) 523, 542, 746, 965
AflII CTTAAG 1 cut(s) 16
AgeI ACCGGT 1 cut(s) 886
AgsI TTSAA 6 cut(s) 48, 237, 812, 1068, 1091, 1138
AjnI CCWGG 2 cut(s) 624, 903
AjuI GAANNNNNNNTTGG 2 cut(s) 112, 144
AluBI AGCT 6 cut(s) 128, 151, 170, 341, 1022, 1172
AluI AGCT 6 cut(s) 128, 151, 170, 341, 1022, 1172
Alw21I GWGCWC 2 cut(s) 153, 474
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 2 cut(s) 527, 996
AlwNI CAGNNNCTG 2 cut(s) 214, 1043
AoxI GGCC 5 cut(s) 264, 514, 568, 627, 841
ApeKI GCWGC 7 cut(s) 155, 158, 170, 214, 217, 736, 824
ApoI RAATTY 2 cut(s) 33, 311
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AsiGI ACCGGT 1 cut(s) 886
Asp718I GGTACC 1 cut(s) 545
AspLEI GCGC 2 cut(s) 214, 883
AsuHPI GGTGA 3 cut(s) 108, 674, 747
AsuII TTCGAA 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 922
BanI GGYRCC 1 cut(s) 545
BanII GRGCYC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 801
Bbv12I GWGCWC 2 cut(s) 153, 474
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 7 cut(s) 142, 145, 157, 201, 204, 748, 836
BccI CCATC 4 cut(s) 536, 740, 929, 1135
BciT130I CCWGG 2 cut(s) 626, 905
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 3 cut(s) 335, 389, 849
BfmI CTRYAG 2 cut(s) 218, 1044
BfoI RGCGCY 2 cut(s) 215, 884
BfrI CTTAAG 1 cut(s) 16
BglII AGATCT 1 cut(s) 358
BisI GCNGC 9 cut(s) 156, 159, 171, 183, 215, 218, 737, 825, 996
BlsI GCNGC 9 cut(s) 157, 160, 172, 184, 216, 219, 738, 826, 997
Bme1390I CCNGG 2 cut(s) 626, 905
BmiI GGNNCC 1 cut(s) 547
BmrFI CCNGG 2 cut(s) 626, 905
BmrI ACTGGG 1 cut(s) 532
BmsI GCATC 5 cut(s) 49, 405, 436, 1030, 1113
BmuI ACTGGG 1 cut(s) 532
BpiI GAAGAC 1 cut(s) 801
Bpu10I CCTNAGC 2 cut(s) 342, 473
Bpu14I TTCGAA 1 cut(s) 364
BsaHI GRCGYC 1 cut(s) 650
BsaJI CCNNGG 1 cut(s) 1155
BsaWI WCCGGW 1 cut(s) 886
Bsc4I CCNNNNNNNGG 4 cut(s) 523, 542, 746, 965
Bse118I RCCGGY 2 cut(s) 516, 886
Bse1I ACTGG 5 cut(s) 306, 527, 571, 600, 651
Bse3DI GCAATG 1 cut(s) 10
BseBI CCWGG 2 cut(s) 626, 905
BseDI CCNNGG 1 cut(s) 1155
BseGI GGATG 2 cut(s) 604, 751
BseLI CCNNNNNNNGG 4 cut(s) 523, 542, 746, 965
BseMI GCAATG 1 cut(s) 10
BseMII CTCAG 2 cut(s) 333, 487
BseNI ACTGG 5 cut(s) 306, 527, 571, 600, 651
BseRI GAGGAG 3 cut(s) 359, 579, 945
BseSI GKGCMC 1 cut(s) 922
BseXI GCAGC 7 cut(s) 142, 145, 157, 201, 204, 748, 836
BseYI CCCAGC 2 cut(s) 998, 1022
BsgI GTGCAG 1 cut(s) 741
BshFI GGCC 5 cut(s) 266, 516, 570, 629, 843
BshNI GGYRCC 1 cut(s) 545
BshTI ACCGGT 1 cut(s) 886
BsiHKAI GWGCWC 2 cut(s) 153, 474
BsiSI CCGG 2 cut(s) 517, 887
BslI CCNNNNNNNGG 4 cut(s) 523, 542, 746, 965
BsmAI GTCTC 1 cut(s) 70
BsnI GGCC 5 cut(s) 266, 516, 570, 629, 843
Bsp119I TTCGAA 1 cut(s) 364
Bsp1286I GDGCHC 3 cut(s) 153, 474, 922
Bsp143I GATC 4 cut(s) 358, 532, 988, 1084
BspACI CCGC 5 cut(s) 38, 183, 660, 758, 996
BspANI GGCC 5 cut(s) 266, 516, 570, 629, 843
BspCNI CTCAG 2 cut(s) 334, 486
BspLI GGNNCC 1 cut(s) 547
BspMAI CTGCAG 1 cut(s) 222
BspPI GGATC 2 cut(s) 527, 996
BspT104I TTCGAA 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 545
BspTI CTTAAG 1 cut(s) 16
BsrBI CCGCTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 10
BsrFI RCCGGY 2 cut(s) 516, 886
BsrI ACTGG 5 cut(s) 306, 527, 571, 600, 651
BssAI RCCGGY 2 cut(s) 516, 886
BssECI CCNNGG 1 cut(s) 1155
BssMI GATC 4 cut(s) 358, 532, 988, 1084
BssNI GRCGYC 1 cut(s) 650
BssT1I CCWWGG 1 cut(s) 1155
Bst2UI CCWGG 2 cut(s) 626, 905
Bst4CI ACNGT 4 cut(s) 64, 262, 374, 437
Bst6I CTCTTC 3 cut(s) 83, 91, 1158
BstACI GRCGYC 1 cut(s) 650
BstAFI CTTAAG 1 cut(s) 16
BstBI TTCGAA 1 cut(s) 364
BstC8I GCNNGC 3 cut(s) 153, 187, 518
BstDEI CTNAG 3 cut(s) 342, 473, 560
BstF5I GGATG 2 cut(s) 604, 751
BstH2I RGCGCY 2 cut(s) 215, 884
BstHHI GCGC 2 cut(s) 214, 883
BstKTI GATC 4 cut(s) 361, 535, 991, 1087
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 4 cut(s) 358, 532, 988, 1084
BstMWI GCNNNNNNNGC 4 cut(s) 167, 179, 766, 849
BstNI CCWGG 2 cut(s) 626, 905
BstNSI RCATGY 1 cut(s) 773
BstSCI CCNGG 2 cut(s) 624, 903
BstSFI CTRYAG 2 cut(s) 218, 1044
BstSLI GKGCMC 1 cut(s) 922
BstV1I GCAGC 7 cut(s) 142, 145, 157, 201, 204, 748, 836
BstV2I GAAGAC 1 cut(s) 801
BstX2I RGATCY 2 cut(s) 358, 532
BstYI RGATCY 2 cut(s) 358, 532
BsuRI GGCC 5 cut(s) 266, 516, 570, 629, 843
BtsCI GGATG 2 cut(s) 604, 751
BtsIMutI CAGTG 5 cut(s) 267, 379, 520, 644, 781
Cac8I GCNNGC 3 cut(s) 153, 187, 518
CaiI CAGNNNCTG 2 cut(s) 214, 1043
CfoI GCGC 2 cut(s) 214, 883
Cfr10I RCCGGY 2 cut(s) 516, 886
CseI GACGC 2 cut(s) 639, 806
Csp6I GTAC 4 cut(s) 26, 203, 299, 546
CspAI ACCGGT 1 cut(s) 886
CviAII CATG 5 cut(s) 133, 683, 770, 839, 992
CviQI GTAC 4 cut(s) 26, 203, 299, 546
DdeI CTNAG 3 cut(s) 342, 473, 560
DpnI GATC 4 cut(s) 360, 534, 990, 1086
DpnII GATC 4 cut(s) 358, 532, 988, 1084
EaeI YGGCCR 2 cut(s) 264, 514
Eam1104I CTCTTC 3 cut(s) 83, 91, 1158
EarI CTCTTC 3 cut(s) 83, 91, 1158
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 1155
Eco24I GRGCYC 1 cut(s) 153
Eco32I GATATC 1 cut(s) 971
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 5 cut(s) 303, 519, 782, 813, 1038
EcoICRI GAGCTC 1 cut(s) 151
EcoRII CCWGG 2 cut(s) 624, 903
EcoRV GATATC 1 cut(s) 971
EcoT14I CCWWGG 1 cut(s) 1155
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 1155
FaeI CATG 5 cut(s) 136, 686, 773, 842, 995
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FatI CATG 5 cut(s) 132, 682, 769, 838, 991
Fnu4HI GCNGC 9 cut(s) 156, 159, 171, 183, 215, 218, 737, 825, 996
FokI GGATG 2 cut(s) 611, 758
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 9 cut(s) 156, 159, 171, 183, 215, 218, 737, 825, 996
FspBI CTAG 3 cut(s) 335, 389, 849
GlaI GCGC 2 cut(s) 213, 882
GluI GCNGC 9 cut(s) 156, 159, 171, 183, 215, 218, 737, 825, 996
GsaI CCCAGC 2 cut(s) 1002, 1026
HaeII RGCGCY 2 cut(s) 215, 884
HaeIII GGCC 5 cut(s) 266, 516, 570, 629, 843
HapII CCGG 2 cut(s) 517, 887
HgaI GACGC 2 cut(s) 639, 806
HhaI GCGC 2 cut(s) 214, 883
Hin1I GRCGYC 1 cut(s) 650
Hin1II CATG 5 cut(s) 136, 686, 773, 842, 995
Hin6I GCGC 2 cut(s) 212, 881
HinP1I GCGC 2 cut(s) 212, 881
HinfI GANTC 6 cut(s) 323, 350, 621, 667, 812, 1151
HpaII CCGG 2 cut(s) 517, 887
HphI GGTGA 3 cut(s) 108, 674, 747
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 4 cut(s) 226, 244, 322, 499
Hpy188III TCNNGA 7 cut(s) 354, 791, 927, 974, 1082, 1088, 1135
Hpy8I GTNNAC 1 cut(s) 278
Hpy99I CGWCG 1 cut(s) 182
HpyAV CCTTC 8 cut(s) 139, 193, 327, 494, 596, 757, 1085, 1132
HpyCH4III ACNGT 4 cut(s) 64, 262, 374, 437
HpyCH4V TGCA 7 cut(s) 220, 710, 722, 736, 769, 838, 1005
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 179, 766, 849
HpyF3I CTNAG 3 cut(s) 342, 473, 560
Hsp92I GRCGYC 1 cut(s) 650
Hsp92II CATG 5 cut(s) 136, 686, 773, 842, 995
HspAI GCGC 2 cut(s) 212, 881
KpnI GGTACC 1 cut(s) 549
KroI GCCGGC 1 cut(s) 516
KroNI GCCGGC 1 cut(s) 518
Kzo9I GATC 4 cut(s) 358, 532, 988, 1084
LmnI GCTCC 2 cut(s) 148, 938
Lsp1109I GCAGC 7 cut(s) 142, 145, 157, 201, 204, 748, 836
LweI GCATC 5 cut(s) 49, 405, 436, 1030, 1113
MaeI CTAG 3 cut(s) 335, 389, 849
MaeIII GTNAC 4 cut(s) 256, 431, 1012, 1033
MalI GATC 4 cut(s) 360, 534, 990, 1086
MbiI CCGCTC 1 cut(s) 185
MboI GATC 4 cut(s) 358, 532, 988, 1084
MboII GAAGA 8 cut(s) 70, 73, 78, 353, 632, 806, 941, 1175
MflI RGATCY 2 cut(s) 358, 532
MhlI GDGCHC 3 cut(s) 153, 474, 922
MluCI AATT 7 cut(s) 33, 120, 311, 451, 894, 1101, 1118
MlyI GAGTC 1 cut(s) 630
MmeI TCCRAC 1 cut(s) 114
MroNI GCCGGC 1 cut(s) 516
MseI TTAA 4 cut(s) 17, 455, 876, 1146
MslI CAYNNNNRTG 2 cut(s) 774, 1180
MspA1I CMGCKG 2 cut(s) 760, 998
MspCI CTTAAG 1 cut(s) 16
MspI CCGG 2 cut(s) 517, 887
MspR9I CCNGG 2 cut(s) 626, 905
MvaI CCWGG 2 cut(s) 626, 905
MwoI GCNNNNNNNGC 4 cut(s) 167, 179, 766, 849
NaeI GCCGGC 1 cut(s) 518
NdeII GATC 4 cut(s) 358, 532, 988, 1084
NgoMIV GCCGGC 1 cut(s) 516
NlaIII CATG 5 cut(s) 136, 686, 773, 842, 995
NlaIV GGNNCC 1 cut(s) 547
NmuCI GTSAC 3 cut(s) 256, 431, 1033
NspI RCATGY 1 cut(s) 773
NspV TTCGAA 1 cut(s) 364
PdiI GCCGGC 1 cut(s) 518
PfeI GAWTC 5 cut(s) 323, 350, 667, 812, 1151
PflMI CCANNNNNTGG 1 cut(s) 746
PinAI ACCGGT 1 cut(s) 886
PkrI GCNGC 9 cut(s) 157, 160, 172, 184, 216, 219, 738, 826, 997
PleI GAGTC 1 cut(s) 629
PpsI GAGTC 1 cut(s) 629
PsiI TTATAA 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 624, 903
PspFI CCCAGC 2 cut(s) 998, 1022
PspGI CCWGG 2 cut(s) 624, 903
PspN4I GGNNCC 1 cut(s) 547
PstI CTGCAG 1 cut(s) 222
PstNI CAGNNNCTG 2 cut(s) 214, 1043
PsuI RGATCY 2 cut(s) 358, 532
RsaI GTAC 4 cut(s) 27, 204, 300, 547
RsaNI GTAC 4 cut(s) 26, 203, 299, 546
RseI CAYNNNNRTG 2 cut(s) 774, 1180
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 4 cut(s) 17, 455, 876, 1146
SatI GCNGC 9 cut(s) 156, 159, 171, 183, 215, 218, 737, 825, 996
Sau3AI GATC 4 cut(s) 358, 532, 988, 1084
SchI GAGTC 1 cut(s) 630
ScrFI CCNGG 2 cut(s) 626, 905
SduI GDGCHC 3 cut(s) 153, 474, 922
SfaNI GCATC 5 cut(s) 49, 405, 436, 1030, 1113
SfcI CTRYAG 2 cut(s) 218, 1044
SfuI TTCGAA 1 cut(s) 364
SmiMI CAYNNNNRTG 2 cut(s) 774, 1180
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 7 cut(s) 33, 120, 311, 451, 894, 1101, 1118
SsiI CCGC 5 cut(s) 38, 183, 660, 758, 996
SspMI CTAG 3 cut(s) 335, 389, 849
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 624, 903
StyI CCWWGG 1 cut(s) 1155
TaaI ACNGT 4 cut(s) 64, 262, 374, 437
TaqI TCGA 3 cut(s) 124, 364, 1083
TasI AATT 7 cut(s) 33, 120, 311, 451, 894, 1101, 1118
TatI WGTACW 1 cut(s) 298
TauI GCSGC 2 cut(s) 185, 998
TfiI GAWTC 5 cut(s) 323, 350, 667, 812, 1151
Tru1I TTAA 4 cut(s) 17, 455, 876, 1146
Tru9I TTAA 4 cut(s) 17, 455, 876, 1146
TscAI CASTG 5 cut(s) 267, 379, 527, 651, 781
TseFI GTSAC 3 cut(s) 256, 431, 1033
TseI GCWGC 7 cut(s) 155, 158, 170, 214, 217, 736, 824
Tsp45I GTSAC 3 cut(s) 256, 431, 1033
TspDTI ATGAA 6 cut(s) 221, 615, 741, 792, 834, 1164
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 5 cut(s) 267, 379, 527, 651, 781
Van91I CCANNNNNTGG 1 cut(s) 746
Vha464I CTTAAG 1 cut(s) 16
XapI RAATTY 2 cut(s) 33, 311
XceI RCATGY 1 cut(s) 773
XcmI CCANNNNNNNNNTGG 1 cut(s) 911
XspI CTAG 3 cut(s) 335, 389, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.