pycom01g01660

SAL1 phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0008514
Physical Location & Seq
Forward (+)
1549115 .. 1556941
7827 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g01660.6

Sequence Viewer

Length: 1206 bp
ATGGCTATAAATTGGTTTAGAGCAGTGCCCAAATTACGACATTCAGAGCCCGAATTCATCAGGTCACACGCATTCTCGCTTTCTTTCTCACCTACCAAAAGGGCCTTCTCTGGAAGTGGAAGAATAGCAACAGCTTTATCTTCTTCTTCTTCTTCAATGTCCTACGCAAAGGAGCTCGCTGCTGCCAAAAAAGCTGCCTCGCTCGCTGCTCTCCTCTGCCAGAAGGTGCAAAAGGCCCTTTTGCAGTCAGACGTTCATTCAAAATCAGATAAAAGTCCAGTTACAGTGGCGGATTACGGTTCACAGGCTATTGTGAGTTTGGTACTGGAAAGGGAAATTCCTTGTGAATCGTTCTCGCTTGTGGCCGAGGAGGACTCGGGAGATCTTCGGAAGGAAAGTGGGCAGGAAACACTAGAGCGCATAACAAAACTTGTTAATGATACTCTTGCCAATAGTGACTTTTCCAGTGTTTCTAATTTAACCACTGAAGATGTGCTCAGAGCTATTGACAATGGGAAATCTGAAGGTGGTTCTAGCGGCCAGCACTGGGTTCTAGATCCCATAGATGGAACCAAAGGGTTTGTTAGAGGAGATCAATATGCCATAGCATTGGGATTGCTGGATGAAGGAAAAGTTGTGTTGGGTGTCCTGGCCTGTCCGAATCTTCCTCTCGCATCCATTAGTGGCAATAATCAGCATTCTTCATATGATAAAGTTGGTTGTCTTTTCTTTGCTACAGTTGGTACCGGAACATATATGCAGCCATTGGATGGTTCTTCCCTGATAAAAGTGCATGTTAGTGCTACTGAAAATCCTGAAGAAGCTTCGTTTTTCGAATCTTTTGAAGCAGCACACTCCTTGCATGACTTGTCTAGCAGCATTGCTCAGAAACTTGGTGTCAAAGCCCCGCCAGTAAGAATTGACAGCCAGGCAAAGTATGGAGCACTTTCCAGAGGAGATGGAGCAATATATCTTCGTTTCCCCCATAAAGGATATCGTGAAAAAATATGGGATCATGCTGCTGGGTGCATTGTCGTGACTGAAGCTGGGGGTGTGGTCGCAGATGCTGCGGGGAACCCGTTGGATTTCTCAAAGGGGAAGTATCTTGATCTTGATACGGGCATAATCGTCACAAATCAGAAACTAATGCCATTACTATTGAAGGCAGTTAAAGAATCCCTGGACGAAAAAGTTTCATCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko00920 ko01100 ko01120 ko04070 map00562 map00920 map01100 map01120 map04070
Pfam Domains
Protein Families
Inositol_P

Protein Analysis

402

Amino Acids

42.81

Weight (kDa)

5.96

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 743
AccB1I GGYRCC 1 cut(s) 743
AccB7I CCANNNNNTGG 1 cut(s) 770
AciI CCGC 4 cut(s) 290, 537, 908, 1070
AclWI GGATC 2 cut(s) 551, 1020
AcoI YGGCCR 2 cut(s) 363, 538
AcsI RAATTY 2 cut(s) 53, 336
AcuI CTGAAG 4 cut(s) 507, 543, 837, 1062
AfaI GTAC 2 cut(s) 324, 745
AfiI CCNNNNNNNGG 4 cut(s) 547, 566, 770, 989
AgsI TTSAA 4 cut(s) 156, 261, 845, 1162
AjnI CCWGG 3 cut(s) 648, 927, 1179
AjuI GAANNNNNNNTTGG 2 cut(s) 89, 121
AluBI AGCT 6 cut(s) 134, 175, 194, 503, 824, 1046
AluI AGCT 6 cut(s) 134, 175, 194, 503, 824, 1046
Alw21I GWGCWC 3 cut(s) 177, 498, 946
AlwI GGATC 2 cut(s) 551, 1020
AlwNI CAGNNNCTG 1 cut(s) 1067
Ama87I CYCGRG 1 cut(s) 376
AoxI GGCC 5 cut(s) 102, 234, 363, 538, 651
ApeKI GCWGC 9 cut(s) 179, 182, 194, 206, 760, 848, 876, 1019, 1067
ApoI RAATTY 2 cut(s) 53, 336
Asp718I GGTACC 1 cut(s) 743
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 102, 235
AsuHPI GGTGA 1 cut(s) 81
AsuII TTCGAA 1 cut(s) 834
AvaI CYCGRG 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 743
BanII GRGCYC 2 cut(s) 51, 177
Bbv12I GWGCWC 3 cut(s) 177, 498, 946
BbvI GCAGC 9 cut(s) 166, 169, 181, 193, 772, 860, 888, 1006, 1054
BccI CCATC 3 cut(s) 560, 764, 953
BciT130I CCWGG 3 cut(s) 650, 929, 1181
BfaI CTAG 4 cut(s) 413, 534, 554, 873
BfmI CTRYAG 1 cut(s) 735
BglII AGATCT 1 cut(s) 382
Bme1390I CCNGG 3 cut(s) 650, 929, 1181
BmeT110I CYCGRG 1 cut(s) 376
BmgT120I GGNCC 2 cut(s) 102, 235
BmiI GGNNCC 3 cut(s) 571, 745, 1076
BmrFI CCNGG 3 cut(s) 650, 929, 1181
BmrI ACTGGG 1 cut(s) 556
BmsI GCATC 2 cut(s) 683, 1054
BmuI ACTGGG 1 cut(s) 556
BplI GAGNNNNNCTC 2 cut(s) 359, 391
Bpu14I TTCGAA 1 cut(s) 834
BsaJI CCNNGG 2 cut(s) 366, 1179
BsaWI WCCGGW 1 cut(s) 746
Bsc4I CCNNNNNNNGG 4 cut(s) 547, 566, 770, 989
Bse1I ACTGG 5 cut(s) 278, 330, 465, 551, 911
Bse3DI GCAATG 1 cut(s) 879
BseBI CCWGG 3 cut(s) 650, 929, 1181
BseDI CCNNGG 2 cut(s) 366, 1179
BseGI GGATG 3 cut(s) 628, 674, 775
BseLI CCNNNNNNNGG 4 cut(s) 547, 566, 770, 989
BseMI GCAATG 1 cut(s) 879
BseMII CTCAG 2 cut(s) 511, 899
BseNI ACTGG 5 cut(s) 278, 330, 465, 551, 911
BseRI GAGGAG 4 cut(s) 203, 383, 603, 969
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 9 cut(s) 166, 169, 181, 193, 772, 860, 888, 1006, 1054
BseYI CCCAGC 2 cut(s) 1022, 1046
BshFI GGCC 5 cut(s) 104, 236, 365, 540, 653
BshNI GGYRCC 1 cut(s) 743
BsiHKAI GWGCWC 3 cut(s) 177, 498, 946
BsiHKCI CYCGRG 1 cut(s) 376
BsiSI CCGG 1 cut(s) 747
BslI CCNNNNNNNGG 4 cut(s) 547, 566, 770, 989
BsmI GAATGC 2 cut(s) 71, 697
BsnI GGCC 5 cut(s) 104, 236, 365, 540, 653
BsoBI CYCGRG 1 cut(s) 376
Bsp119I TTCGAA 1 cut(s) 834
Bsp1286I GDGCHC 5 cut(s) 30, 51, 177, 498, 946
Bsp143I GATC 5 cut(s) 382, 556, 592, 1012, 1108
BspACI CCGC 4 cut(s) 290, 537, 908, 1070
BspANI GGCC 5 cut(s) 104, 236, 365, 540, 653
BspCNI CTCAG 2 cut(s) 510, 898
BspLI GGNNCC 3 cut(s) 571, 745, 1076
BspPI GGATC 2 cut(s) 551, 1020
BspT104I TTCGAA 1 cut(s) 834
BspT107I GGYRCC 1 cut(s) 743
BsrDI GCAATG 1 cut(s) 879
BsrI ACTGG 5 cut(s) 278, 330, 465, 551, 911
BssECI CCNNGG 2 cut(s) 366, 1179
BssMI GATC 5 cut(s) 382, 556, 592, 1012, 1108
Bst2UI CCWGG 3 cut(s) 650, 929, 1181
Bst4CI ACNGT 3 cut(s) 286, 299, 739
BstAPI GCANNNNNTGC 1 cut(s) 1067
BstBI TTCGAA 1 cut(s) 834
BstC8I GCNNGC 3 cut(s) 177, 204, 542
BstDEI CTNAG 2 cut(s) 497, 885
BstF5I GGATG 3 cut(s) 628, 674, 775
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 5 cut(s) 385, 559, 595, 1015, 1111
BstMBI GATC 5 cut(s) 382, 556, 592, 1012, 1108
BstMWI GCNNNNNNNGC 3 cut(s) 191, 203, 1067
BstNI CCWGG 3 cut(s) 650, 929, 1181
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 3 cut(s) 648, 927, 1179
BstSFI CTRYAG 1 cut(s) 735
BstSLI GKGCMC 1 cut(s) 30
BstV1I GCAGC 9 cut(s) 166, 169, 181, 193, 772, 860, 888, 1006, 1054
BstX2I RGATCY 2 cut(s) 382, 556
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 2 cut(s) 382, 556
BsuRI GGCC 5 cut(s) 104, 236, 365, 540, 653
BtsCI GGATG 3 cut(s) 628, 674, 775
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 5 cut(s) 30, 291, 472, 483, 544
Cac8I GCNNGC 3 cut(s) 177, 204, 542
CaiI CAGNNNCTG 1 cut(s) 1067
CfoI GCGC 1 cut(s) 420
Cfr13I GGNCC 2 cut(s) 102, 235
Csp6I GTAC 2 cut(s) 323, 744
CviAII CATG 3 cut(s) 794, 863, 1016
CviQI GTAC 2 cut(s) 323, 744
DdeI CTNAG 2 cut(s) 497, 885
DpnI GATC 5 cut(s) 384, 558, 594, 1014, 1110
DpnII GATC 5 cut(s) 382, 556, 592, 1012, 1108
EaeI YGGCCR 2 cut(s) 363, 538
EciI GGCGGA 1 cut(s) 305
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 51, 177
Eco32I GATATC 1 cut(s) 995
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 4 cut(s) 507, 543, 837, 1062
Eco88I CYCGRG 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 175
EcoO109I RGGNCCY 2 cut(s) 102, 235
EcoRI GAATTC 1 cut(s) 53
EcoRII CCWGG 3 cut(s) 648, 927, 1179
EcoRV GATATC 1 cut(s) 995
EcoT38I GRGCYC 2 cut(s) 51, 177
FaeI CATG 3 cut(s) 797, 866, 1019
FatI CATG 3 cut(s) 793, 862, 1015
FauI CCCGC 2 cut(s) 915, 1063
FauNDI CATATG 1 cut(s) 706
FokI GGATG 3 cut(s) 635, 661, 782
FriOI GRGCYC 2 cut(s) 51, 177
FspBI CTAG 4 cut(s) 413, 534, 554, 873
GlaI GCGC 1 cut(s) 419
GsaI CCCAGC 2 cut(s) 1026, 1050
HaeIII GGCC 5 cut(s) 104, 236, 365, 540, 653
HapII CCGG 1 cut(s) 747
HhaI GCGC 1 cut(s) 420
Hin1II CATG 3 cut(s) 797, 866, 1019
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 5 cut(s) 347, 374, 661, 836, 1175
HpaII CCGG 1 cut(s) 747
HphI GGTGA 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 302
Hpy188III TCNNGA 9 cut(s) 111, 378, 554, 815, 951, 998, 1036, 1106, 1112
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 6 cut(s) 115, 217, 385, 518, 620, 1156
HpyCH4III ACNGT 3 cut(s) 286, 299, 739
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 6 cut(s) 229, 244, 760, 793, 862, 1029
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 203, 1067
HpyF3I CTNAG 2 cut(s) 497, 885
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 3 cut(s) 797, 866, 1019
HspAI GCGC 1 cut(s) 418
KpnI GGTACC 1 cut(s) 747
Kzo9I GATC 5 cut(s) 382, 556, 592, 1012, 1108
LmnI GCTCC 3 cut(s) 172, 941, 962
Lsp1109I GCAGC 9 cut(s) 166, 169, 181, 193, 772, 860, 888, 1006, 1054
LweI GCATC 2 cut(s) 683, 1054
MaeI CTAG 4 cut(s) 413, 534, 554, 873
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 5 cut(s) 63, 280, 455, 1036, 1129
MalI GATC 5 cut(s) 384, 558, 594, 1014, 1110
MboI GATC 5 cut(s) 382, 556, 592, 1012, 1108
MflI RGATCY 2 cut(s) 382, 556
MhlI GDGCHC 5 cut(s) 30, 51, 177, 498, 946
MluCI AATT 6 cut(s) 10, 32, 53, 336, 475, 918
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 1062
MnlI CCTC 7 cut(s) 208, 224, 361, 364, 581, 678, 947
MseI TTAA 3 cut(s) 435, 479, 1170
MslI CAYNNNNRTG 2 cut(s) 798, 1034
MspI CCGG 1 cut(s) 747
MspR9I CCNGG 3 cut(s) 650, 929, 1181
Mva1269I GAATGC 2 cut(s) 71, 697
MvaI CCWGG 3 cut(s) 650, 929, 1181
MwoI GCNNNNNNNGC 3 cut(s) 191, 203, 1067
NdeI CATATG 1 cut(s) 706
NdeII GATC 5 cut(s) 382, 556, 592, 1012, 1108
NlaIII CATG 3 cut(s) 797, 866, 1019
NlaIV GGNNCC 3 cut(s) 571, 745, 1076
NmeAIII GCCGAG 1 cut(s) 391
NmuCI GTSAC 4 cut(s) 63, 455, 1036, 1129
NspI RCATGY 1 cut(s) 797
NspV TTCGAA 1 cut(s) 834
PctI GAATGC 2 cut(s) 71, 697
PfeI GAWTC 4 cut(s) 347, 661, 836, 1175
PflMI CCANNNNNTGG 1 cut(s) 770
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 3 cut(s) 648, 927, 1179
PspFI CCCAGC 2 cut(s) 1022, 1046
PspGI CCWGG 3 cut(s) 648, 927, 1179
PspN4I GGNNCC 3 cut(s) 571, 745, 1076
PspPI GGNCC 2 cut(s) 102, 235
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 2 cut(s) 382, 556
RsaI GTAC 2 cut(s) 324, 745
RsaNI GTAC 2 cut(s) 323, 744
RseI CAYNNNNRTG 2 cut(s) 798, 1034
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 3 cut(s) 435, 479, 1170
Sau3AI GATC 5 cut(s) 382, 556, 592, 1012, 1108
Sau96I GGNCC 2 cut(s) 102, 235
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 3 cut(s) 650, 929, 1181
SduI GDGCHC 5 cut(s) 30, 51, 177, 498, 946
SfaNI GCATC 2 cut(s) 683, 1054
SfcI CTRYAG 1 cut(s) 735
SfuI TTCGAA 1 cut(s) 834
SmiMI CAYNNNNRTG 2 cut(s) 798, 1034
Sse9I AATT 6 cut(s) 10, 32, 53, 336, 475, 918
SsiI CCGC 4 cut(s) 290, 537, 908, 1070
SspMI CTAG 4 cut(s) 413, 534, 554, 873
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 3 cut(s) 648, 927, 1179
TaaI ACNGT 3 cut(s) 286, 299, 739
TaiI ACGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 834
TasI AATT 6 cut(s) 10, 32, 53, 336, 475, 918
TauI GCSGC 1 cut(s) 540
TfiI GAWTC 4 cut(s) 347, 661, 836, 1175
Tru1I TTAA 3 cut(s) 435, 479, 1170
Tru9I TTAA 3 cut(s) 435, 479, 1170
TscAI CASTG 5 cut(s) 30, 291, 472, 490, 551
TseFI GTSAC 4 cut(s) 63, 455, 1036, 1129
TseI GCWGC 9 cut(s) 179, 182, 194, 206, 760, 848, 876, 1019, 1067
Tsp45I GTSAC 4 cut(s) 63, 455, 1036, 1129
TspDTI ATGAA 5 cut(s) 46, 245, 639, 693, 1185
TspRI CASTG 5 cut(s) 30, 291, 472, 490, 551
Van91I CCANNNNNTGG 1 cut(s) 770
XapI RAATTY 2 cut(s) 53, 336
XbaI TCTAGA 1 cut(s) 553
XceI RCATGY 1 cut(s) 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 935
XspI CTAG 4 cut(s) 413, 534, 554, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.