RchiOBHm_Chr2g0121731

SAL1 phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008514
Physical Location & Seq
Forward (+)
34641526 .. 34645960
4435 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49419

Sequence Viewer

Length: 1263 bp
ATGAAAGGCTTTCCCCCAATACGTGCGGGGAGATTGTCTTTCTTATCCTCTGTACAATACTGTATCTTCTTATCATCGAAAGATAAGTTTGACTATTTAGGACTGGAACTCATCATTTTGGAGAACATAGATGTTTCATTAGTGTACCCATACATTGATTTTACAAAAACATCTTGTTTGGGCTGGCTAGAGGATGTCGCTTTCCCCTTAGCTATCTTAATGCGAGGAAGAGGACAGCCATTGGATAAGGGAATGAAATTGAAGATGTTACGAGGGAAGGTACAACAGGCGCTTTTGCAGTCAGATGTTCATTCAAAATCAGATAAAAGTCCTGTCACAGTGGCCGATTATGGTTCACAGGCTCTTGTTAGTTTTGTTCTGGAAAGGGAACTTCCTTCCGAATCATTCTCTCTAGTAGCTGAGGAGGATTCGGGAGATCTTCGAATAGACAGTGGCAGGGAAACACTAGAACGCATCACAAAACTTGTTAATGATACTCTTGCCAACAGTGACAGTTATAGTGATTCTAATTTGACCACTGAAGATGTGCTCAGGGCTATTGACAATGGCAAATCTGAAGGTGGTTCTTGTGGCCAGCACTGGGTTTTAGATCCCATTGACGGTACCAAAGGGTTTCTTAGAGGAGACCAATATGCCATAGCATTAGCATTACTGGATGAAGGAAAAGTTGTGTTGGGTGTCCTGGCTTGTCCAAATCTCCCCCTGGCGTCCATTAGCGGTGATAATCAGCATTCTTCTCATGATAAAATTGGTTGCCTTTTCTTTGCAAAACTTGGTGCAGGAACATATATGCAGCCATTGGATGGTTCATCACCGCTAAAGGTGCATGTCAGTGCTACTGAAAATCCTGAAGACGCCTCATTATTTGAGTCTTATGAAGCAGCACACTCCTTGCATGGCTTGTCTAGCACCATTGTCAAGAAACTTGGAGTCAAAGCACCGCCAGTTAGAATTGACAGCCAGGCGAAGTATGGGGCACTTTCCAGAGGAGATGGAGCAATATATCTTCGTTTCCCCCATAAAGGATATCGCGAGAAAATATGGGATCATGCTGCTGGGTGCATTGTTGTTACTGAAGCTGGTGGTGTAGTCACAGATGCTGCAGGAAATCCATTGGACTTTTCAAAAGGGAGGTATCTGGATCTTGAAACAGGCATAATTGTTACCAACCAGAAATTGATGCCATCACTCTTGAAGGCAGTTAAAGAATCCTTGGAGGAAGAGAGAGTTTCATCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko00920 ko01100 ko01120 ko04070 map00562 map00920 map01100 map01120 map04070
Pfam Domains
Protein Families
Inositol_P

Protein Analysis

420

Amino Acids

45.57

Weight (kDa)

5.39

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 108 - 411 4.1e-47 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 623
AccB7I CCANNNNNTGG 1 cut(s) 824
AccII CGCG 1 cut(s) 1053
AciI CCGC 4 cut(s) 26, 738, 836, 962
AclWI GGATC 3 cut(s) 605, 1074, 1170
AcoI YGGCCR 2 cut(s) 342, 592
AcuI CTGAAG 4 cut(s) 561, 597, 891, 1116
AcyI GRCGYC 2 cut(s) 728, 876
AfaI GTAC 4 cut(s) 54, 146, 282, 625
AfiI CCNNNNNNNGG 4 cut(s) 601, 620, 824, 1043
AgsI TTSAA 5 cut(s) 262, 315, 1146, 1169, 1216
AjnI CCWGG 3 cut(s) 702, 723, 981
AluBI AGCT 3 cut(s) 212, 419, 1100
AluI AGCT 3 cut(s) 212, 419, 1100
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 1 cut(s) 639
AlwI GGATC 3 cut(s) 605, 1074, 1170
AlwNI CAGNNNCTG 1 cut(s) 1121
AoxI GGCC 2 cut(s) 342, 592
ApeKI GCWGC 4 cut(s) 814, 902, 1073, 1121
Asp718I GGTACC 1 cut(s) 623
AspLEI GCGC 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 752, 825
AsuII TTCGAA 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 1000
BalI TGGCCA 1 cut(s) 594
BanI GGYRCC 1 cut(s) 623
BbsI GAAGAC 1 cut(s) 879
Bbv12I GWGCWC 1 cut(s) 552
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 4 cut(s) 826, 914, 1060, 1108
BccI CCATC 3 cut(s) 818, 1007, 1213
BciT130I CCWGG 3 cut(s) 704, 725, 983
BcoDI GTCTC 1 cut(s) 639
BfaI CTAG 4 cut(s) 188, 413, 467, 927
BfmI CTRYAG 1 cut(s) 1122
BfoI RGCGCY 1 cut(s) 293
BglII AGATCT 1 cut(s) 436
BisI GCNGC 4 cut(s) 815, 903, 1074, 1122
BlsI GCNGC 4 cut(s) 816, 904, 1075, 1123
Bme1390I CCNGG 3 cut(s) 704, 725, 983
BmiI GGNNCC 1 cut(s) 625
BmrFI CCNGG 3 cut(s) 704, 725, 983
BmrI ACTGGG 1 cut(s) 610
BmsI GCATC 3 cut(s) 483, 1108, 1191
BmuI ACTGGG 1 cut(s) 610
BpiI GAAGAC 1 cut(s) 879
Bpu10I CCTNAGC 3 cut(s) 208, 420, 551
Bpu14I TTCGAA 1 cut(s) 442
BsaAI YACGTR 1 cut(s) 23
BsaHI GRCGYC 2 cut(s) 728, 876
BsaI GGTCTC 1 cut(s) 639
BsaJI CCNNGG 2 cut(s) 723, 1233
Bsc4I CCNNNNNNNGG 4 cut(s) 601, 620, 824, 1043
Bse1I ACTGG 4 cut(s) 108, 605, 678, 965
BseBI CCWGG 3 cut(s) 704, 725, 983
BseDI CCNNGG 2 cut(s) 723, 1233
BseGI GGATG 3 cut(s) 199, 682, 829
BseLI CCNNNNNNNGG 4 cut(s) 601, 620, 824, 1043
BseMII CTCAG 2 cut(s) 411, 565
BseNI ACTGG 4 cut(s) 108, 605, 678, 965
BseRI GAGGAG 3 cut(s) 437, 657, 1023
BseSI GKGCMC 1 cut(s) 1000
BseXI GCAGC 4 cut(s) 826, 914, 1060, 1108
BseYI CCCAGC 1 cut(s) 1076
BsgI GTGCAG 1 cut(s) 819
Bsh1236I CGCG 1 cut(s) 1053
BshFI GGCC 2 cut(s) 344, 594
BshNI GGYRCC 1 cut(s) 623
BsiHKAI GWGCWC 1 cut(s) 552
BslI CCNNNNNNNGG 4 cut(s) 601, 620, 824, 1043
BsmAI GTCTC 1 cut(s) 639
BsmI GAATGC 1 cut(s) 751
BsnI GGCC 2 cut(s) 344, 594
Bso31I GGTCTC 1 cut(s) 639
Bsp119I TTCGAA 1 cut(s) 442
Bsp1286I GDGCHC 2 cut(s) 552, 1000
Bsp1407I TGTACA 1 cut(s) 52
Bsp143I GATC 4 cut(s) 436, 610, 1066, 1162
Bsp68I TCGCGA 1 cut(s) 1053
BspACI CCGC 4 cut(s) 26, 738, 836, 962
BspANI GGCC 2 cut(s) 344, 594
BspCNI CTCAG 2 cut(s) 412, 564
BspFNI CGCG 1 cut(s) 1053
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 1 cut(s) 625
BspMAI CTGCAG 1 cut(s) 1126
BspPI GGATC 3 cut(s) 605, 1074, 1170
BspT104I TTCGAA 1 cut(s) 442
BspT107I GGYRCC 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 639
BsrGI TGTACA 1 cut(s) 52
BsrI ACTGG 4 cut(s) 108, 605, 678, 965
BssECI CCNNGG 2 cut(s) 723, 1233
BssMI GATC 4 cut(s) 436, 610, 1066, 1162
BssNI GRCGYC 2 cut(s) 728, 876
BssT1I CCWWGG 1 cut(s) 1233
Bst2UI CCWGG 3 cut(s) 704, 725, 983
Bst4CI ACNGT 6 cut(s) 62, 340, 452, 509, 515, 623
Bst6I CTCTTC 2 cut(s) 223, 1236
BstACI GRCGYC 2 cut(s) 728, 876
BstAUI TGTACA 1 cut(s) 52
BstBAI YACGTR 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 442
BstC8I GCNNGC 2 cut(s) 185, 596
BstDEI CTNAG 4 cut(s) 208, 420, 551, 638
BstF5I GGATG 3 cut(s) 199, 682, 829
BstFNI CGCG 1 cut(s) 1053
BstH2I RGCGCY 1 cut(s) 293
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 4 cut(s) 439, 613, 1069, 1165
BstMAI GTCTC 1 cut(s) 639
BstMBI GATC 4 cut(s) 436, 610, 1066, 1162
BstMWI GCNNNNNNNGC 2 cut(s) 844, 927
BstNI CCWGG 3 cut(s) 704, 725, 983
BstNSI RCATGY 1 cut(s) 851
BstSCI CCNGG 3 cut(s) 702, 723, 981
BstSFI CTRYAG 1 cut(s) 1122
BstSLI GKGCMC 1 cut(s) 1000
BstUI CGCG 1 cut(s) 1053
BstV1I GCAGC 4 cut(s) 826, 914, 1060, 1108
BstV2I GAAGAC 1 cut(s) 879
BstX2I RGATCY 3 cut(s) 436, 610, 1162
BstYI RGATCY 3 cut(s) 436, 610, 1162
BsuRI GGCC 2 cut(s) 344, 594
BtsCI GGATG 3 cut(s) 199, 682, 829
BtsIMutI CAGTG 6 cut(s) 345, 457, 514, 537, 598, 859
BtuMI TCGCGA 1 cut(s) 1053
Cac8I GCNNGC 2 cut(s) 185, 596
CaiI CAGNNNCTG 1 cut(s) 1121
CciI TCATGA 1 cut(s) 760
CfoI GCGC 1 cut(s) 292
CseI GACGC 2 cut(s) 717, 884
Csp6I GTAC 4 cut(s) 53, 145, 281, 624
CviAII CATG 4 cut(s) 761, 848, 917, 1070
CviQI GTAC 4 cut(s) 53, 145, 281, 624
DdeI CTNAG 4 cut(s) 208, 420, 551, 638
DpnI GATC 4 cut(s) 438, 612, 1068, 1164
DpnII GATC 4 cut(s) 436, 610, 1066, 1162
EaeI YGGCCR 2 cut(s) 342, 592
Eam1104I CTCTTC 2 cut(s) 223, 1236
EarI CTCTTC 2 cut(s) 223, 1236
Eco130I CCWWGG 1 cut(s) 1233
Eco31I GGTCTC 1 cut(s) 639
Eco32I GATATC 1 cut(s) 1049
Eco57I CTGAAG 4 cut(s) 561, 597, 891, 1116
EcoRII CCWGG 3 cut(s) 702, 723, 981
EcoRV GATATC 1 cut(s) 1049
EcoT14I CCWWGG 1 cut(s) 1233
ErhI CCWWGG 1 cut(s) 1233
FaeI CATG 4 cut(s) 764, 851, 920, 1073
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FatI CATG 4 cut(s) 760, 847, 916, 1069
FauI CCCGC 1 cut(s) 19
Fnu4HI GCNGC 4 cut(s) 815, 903, 1074, 1122
FokI GGATG 3 cut(s) 206, 689, 836
Fsp4HI GCNGC 4 cut(s) 815, 903, 1074, 1122
FspBI CTAG 4 cut(s) 188, 413, 467, 927
GlaI GCGC 1 cut(s) 291
GluI GCNGC 4 cut(s) 815, 903, 1074, 1122
GsaI CCCAGC 1 cut(s) 1080
HaeII RGCGCY 1 cut(s) 293
HaeIII GGCC 2 cut(s) 344, 594
HgaI GACGC 2 cut(s) 717, 884
HhaI GCGC 1 cut(s) 292
Hin1I GRCGYC 2 cut(s) 728, 876
Hin1II CATG 4 cut(s) 764, 851, 920, 1073
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HinfI GANTC 6 cut(s) 401, 428, 524, 890, 951, 1229
HphI GGTGA 2 cut(s) 752, 825
Hpy166II GTNNAC 2 cut(s) 145, 356
Hpy188I TCNGA 4 cut(s) 304, 322, 400, 577
Hpy8I GTNNAC 2 cut(s) 145, 356
HpyAV CCTTC 5 cut(s) 271, 405, 572, 674, 1210
HpyCH4III ACNGT 6 cut(s) 62, 340, 452, 509, 515, 623
HpyCH4IV ACGT 1 cut(s) 22
HpyCH4V TGCA 8 cut(s) 298, 788, 800, 814, 847, 916, 1083, 1124
HpyF10VI GCNNNNNNNGC 2 cut(s) 844, 927
HpyF3I CTNAG 4 cut(s) 208, 420, 551, 638
HpySE526I ACGT 1 cut(s) 22
Hsp92I GRCGYC 2 cut(s) 728, 876
Hsp92II CATG 4 cut(s) 764, 851, 920, 1073
HspAI GCGC 1 cut(s) 290
KpnI GGTACC 1 cut(s) 627
Kzo9I GATC 4 cut(s) 436, 610, 1066, 1162
LmnI GCTCC 1 cut(s) 1016
Lsp1109I GCAGC 4 cut(s) 826, 914, 1060, 1108
LweI GCATC 3 cut(s) 483, 1108, 1191
MaeI CTAG 4 cut(s) 188, 413, 467, 927
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 6 cut(s) 267, 334, 509, 1090, 1111, 1183
MalI GATC 4 cut(s) 438, 612, 1068, 1164
MboI GATC 4 cut(s) 436, 610, 1066, 1162
MboII GAAGA 9 cut(s) 58, 240, 274, 431, 554, 747, 884, 1019, 1253
MflI RGATCY 3 cut(s) 436, 610, 1162
MhlI GDGCHC 2 cut(s) 552, 1000
MlsI TGGCCA 1 cut(s) 594
MluCI AATT 6 cut(s) 257, 529, 768, 972, 1179, 1196
MluNI TGGCCA 1 cut(s) 594
MlyI GAGTC 2 cut(s) 899, 960
Mox20I TGGCCA 1 cut(s) 594
MscI TGGCCA 1 cut(s) 594
MseI TTAA 3 cut(s) 218, 489, 1224
MslI CAYNNNNRTG 2 cut(s) 852, 1258
Msp20I TGGCCA 1 cut(s) 594
MspR9I CCNGG 3 cut(s) 704, 725, 983
Mva1269I GAATGC 1 cut(s) 751
MvaI CCWGG 3 cut(s) 704, 725, 983
MvnI CGCG 1 cut(s) 1053
MwoI GCNNNNNNNGC 2 cut(s) 844, 927
NdeII GATC 4 cut(s) 436, 610, 1066, 1162
NlaIII CATG 4 cut(s) 764, 851, 920, 1073
NlaIV GGNNCC 1 cut(s) 625
NmuCI GTSAC 3 cut(s) 334, 509, 1111
NruI TCGCGA 1 cut(s) 1053
NspI RCATGY 1 cut(s) 851
NspV TTCGAA 1 cut(s) 442
PagI TCATGA 1 cut(s) 760
PctI GAATGC 1 cut(s) 751
PfeI GAWTC 4 cut(s) 401, 428, 524, 1229
PflMI CCANNNNNTGG 1 cut(s) 824
PkrI GCNGC 4 cut(s) 816, 904, 1075, 1123
PleI GAGTC 2 cut(s) 898, 959
PpsI GAGTC 2 cut(s) 898, 959
Ppu21I YACGTR 1 cut(s) 23
Psp6I CCWGG 3 cut(s) 702, 723, 981
PspFI CCCAGC 1 cut(s) 1076
PspGI CCWGG 3 cut(s) 702, 723, 981
PspN4I GGNNCC 1 cut(s) 625
PstI CTGCAG 1 cut(s) 1126
PstNI CAGNNNCTG 1 cut(s) 1121
PsuI RGATCY 3 cut(s) 436, 610, 1162
RruI TCGCGA 1 cut(s) 1053
RsaI GTAC 4 cut(s) 54, 146, 282, 625
RsaNI GTAC 4 cut(s) 53, 145, 281, 624
RseI CAYNNNNRTG 2 cut(s) 852, 1258
SaqAI TTAA 3 cut(s) 218, 489, 1224
SatI GCNGC 4 cut(s) 815, 903, 1074, 1122
Sau3AI GATC 4 cut(s) 436, 610, 1066, 1162
SchI GAGTC 2 cut(s) 899, 960
ScrFI CCNGG 3 cut(s) 704, 725, 983
SduI GDGCHC 2 cut(s) 552, 1000
SetI ASST 8 cut(s) 25, 214, 282, 421, 583, 846, 1102, 1157
SfaNI GCATC 3 cut(s) 483, 1108, 1191
SfcI CTRYAG 1 cut(s) 1122
SfuI TTCGAA 1 cut(s) 442
SmiMI CAYNNNNRTG 2 cut(s) 852, 1258
Sse9I AATT 6 cut(s) 257, 529, 768, 972, 1179, 1196
SsiI CCGC 4 cut(s) 26, 738, 836, 962
SspMI CTAG 4 cut(s) 188, 413, 467, 927
StyD4I CCNGG 3 cut(s) 702, 723, 981
StyI CCWWGG 1 cut(s) 1233
TaaI ACNGT 6 cut(s) 62, 340, 452, 509, 515, 623
TaiI ACGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 77, 442
TasI AATT 6 cut(s) 257, 529, 768, 972, 1179, 1196
TatI WGTACW 1 cut(s) 52
TfiI GAWTC 4 cut(s) 401, 428, 524, 1229
Tru1I TTAA 3 cut(s) 218, 489, 1224
Tru9I TTAA 3 cut(s) 218, 489, 1224
TscAI CASTG 6 cut(s) 345, 457, 514, 544, 605, 859
TseFI GTSAC 3 cut(s) 334, 509, 1111
TseI GCWGC 4 cut(s) 814, 902, 1073, 1121
Tsp45I GTSAC 3 cut(s) 334, 509, 1111
TspDTI ATGAA 8 cut(s) 17, 126, 269, 299, 693, 819, 912, 1242
TspRI CASTG 6 cut(s) 345, 457, 514, 544, 605, 859
Van91I CCANNNNNTGG 1 cut(s) 824
XceI RCATGY 1 cut(s) 851
XcmI CCANNNNNNNNNTGG 1 cut(s) 989
XspI CTAG 4 cut(s) 188, 413, 467, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.