RLG00000018628

SAL1 phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0008514
Physical Location & Seq
Forward (+)
32970476 .. 32975568
5093 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018628

Sequence Viewer

Length: 1191 bp
ATGGCTATAAATTGCTTGAGAGCAATACCCAAAATTCCGCATTCTTCAAACCCCAAAATCACCAGCTCATTCTCCAACTCTTTCCTTTTCTCTTCCAACTCCAAACCCAAAAGGGTCTTTTCATCAATTCGAGCTTCAATGTCTTACGAGAAGGAGCTCGCTGCTGCCAAGAAAGCTGCCTCCGTCGCCGCTCGCCTCTGCCAGAAGGTACAGCAGGCACTGTTGCAGTCAGATGTTCATTCAAAATCAGATAAAAGTCCTGTCACAGTGGCCGATTATGGTTCACAGGCTCTTGTTAGTTTTGTTCTGGAAAGGGAACTTCCTTCCGAATCATTATCTCTAGTAGCTGAGGAGGATTCGGGAGATCTTCGAATAGACAGTGCCAGGGAAACACTAGAACGCATCACAAAACTTGTTAATGATACTCTTGCCAAGAGTGACAGTTATAGTGATTCTAATTTGACCACTGAAGATGTGCTCAGGGCTATTGACAATGGCAAATCTGAAGGTGGTTCTTGTGGCCGGCACTGGGTTTTAGATCCCATTGACGGTACCAAAGGGTTTCTTAGAGGAGACCAATATGCCATAGCATTAGCATTACTGGATGAAGGAAAAGTTGTGTTGGGTGTCCTGGCTTGTCCAAATCTCCCCCTGGCGTCCATTAGCGGTGATAGTCAGCATTCTGCTCATGATAAAATTGGTTGCCTTTTCTTTGCAAAACTTGGTGCAGGAACATATATGCAGCCATTGGATGGTTCATCACCGCTAAAGGTGCATGTCAGTGCTACTGAAAATCCTGAAGACGCCTCATTATTTGAGTCTTATGAAGCAGCACACTCCTTGCATGGCTTGTCTAGCACCATTGCCAAGAAACTTGGAGTCAAAGCACCGCCAGTTAGAATTGACAGCCAGGCAAAGTACGGGGCACTTTCCAGAGGAGATGGAGCAATATATCTTCGTTTCCCCCATAAAGGATATCGCGAGAAAATATGGGATCATGCTGCTGGGTGCATTGTTGTTACTGAAGCTGGGGGTGTAGTCACAGATGCTGCAGGAAATCCACTGGACTTTTCAAAAGGGAGGTATCTGGGTCTTGAAACAGGCATAATTGTTACCAACCAGAAATTGATGCCATCACTCTTGAAGGCAGTTAAAGAATCATTGGACGAAGAGAAAGTTTCATCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko00920 ko01100 ko01120 ko04070 map00562 map00920 map01100 map01120 map04070
Pfam Domains
Protein Families
Inositol_P

Protein Analysis

397

Amino Acids

42.35

Weight (kDa)

6.57

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 84 - 387 7e-49 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 551
AccB7I CCANNNNNTGG 1 cut(s) 752
AccBSI CCGCTC 1 cut(s) 191
AccII CGCG 1 cut(s) 981
AciI CCGC 5 cut(s) 38, 189, 666, 764, 890
AclWI GGATC 2 cut(s) 533, 1002
AcoI YGGCCR 2 cut(s) 270, 520
AcsI RAATTY 1 cut(s) 33
AcuI CTGAAG 4 cut(s) 489, 525, 819, 1044
AcyI GRCGYC 2 cut(s) 656, 804
AfaI GTAC 3 cut(s) 210, 553, 920
AfiI CCNNNNNNNGG 4 cut(s) 529, 548, 752, 971
AgsI TTSAA 6 cut(s) 48, 138, 243, 1074, 1097, 1144
AjnI CCWGG 4 cut(s) 383, 630, 651, 909
AluBI AGCT 6 cut(s) 66, 134, 157, 176, 347, 1028
AluI AGCT 6 cut(s) 66, 134, 157, 176, 347, 1028
Alw21I GWGCWC 2 cut(s) 159, 480
Alw26I GTCTC 1 cut(s) 567
AlwI GGATC 2 cut(s) 533, 1002
AlwNI CAGNNNCTG 2 cut(s) 220, 1049
AoxI GGCC 2 cut(s) 270, 520
ApeKI GCWGC 7 cut(s) 161, 164, 176, 742, 830, 1001, 1049
ApoI RAATTY 1 cut(s) 33
Asp718I GGTACC 1 cut(s) 551
AsuHPI GGTGA 3 cut(s) 52, 680, 753
AsuII TTCGAA 1 cut(s) 370
BaeGI GKGCMC 1 cut(s) 928
BanI GGYRCC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 807
Bbv12I GWGCWC 2 cut(s) 159, 480
BbvCI CCTCAGC 1 cut(s) 348
BbvI GCAGC 7 cut(s) 148, 151, 163, 754, 842, 988, 1036
BccI CCATC 3 cut(s) 746, 935, 1141
BciT130I CCWGG 4 cut(s) 385, 632, 653, 911
BcoDI GTCTC 1 cut(s) 567
BfaI CTAG 3 cut(s) 341, 395, 855
BfmI CTRYAG 1 cut(s) 1050
BglII AGATCT 1 cut(s) 364
BisI GCNGC 8 cut(s) 162, 165, 177, 189, 743, 831, 1002, 1050
BlsI GCNGC 8 cut(s) 163, 166, 178, 190, 744, 832, 1003, 1051
Bme1390I CCNGG 4 cut(s) 385, 632, 653, 911
BmiI GGNNCC 1 cut(s) 553
BmrFI CCNGG 4 cut(s) 385, 632, 653, 911
BmrI ACTGGG 1 cut(s) 538
BmsI GCATC 3 cut(s) 411, 1036, 1119
BmuI ACTGGG 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 807
Bpu10I CCTNAGC 2 cut(s) 348, 479
Bpu14I TTCGAA 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 37
BsaHI GRCGYC 2 cut(s) 656, 804
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 384, 651
Bsc4I CCNNNNNNNGG 4 cut(s) 529, 548, 752, 971
Bse118I RCCGGY 1 cut(s) 522
Bse1I ACTGG 4 cut(s) 533, 606, 893, 1068
Bse3DI GCAATG 1 cut(s) 861
BseBI CCWGG 4 cut(s) 385, 632, 653, 911
BseDI CCNNGG 2 cut(s) 384, 651
BseGI GGATG 2 cut(s) 610, 757
BseLI CCNNNNNNNGG 4 cut(s) 529, 548, 752, 971
BseMI GCAATG 1 cut(s) 861
BseMII CTCAG 2 cut(s) 339, 493
BseNI ACTGG 4 cut(s) 533, 606, 893, 1068
BseRI GAGGAG 3 cut(s) 365, 585, 951
BseSI GKGCMC 1 cut(s) 928
BseXI GCAGC 7 cut(s) 148, 151, 163, 754, 842, 988, 1036
BseYI CCCAGC 2 cut(s) 1004, 1028
BsgI GTGCAG 1 cut(s) 747
Bsh1236I CGCG 1 cut(s) 981
BshFI GGCC 2 cut(s) 272, 522
BshNI GGYRCC 1 cut(s) 551
BsiHKAI GWGCWC 2 cut(s) 159, 480
BsiSI CCGG 1 cut(s) 523
BslI CCNNNNNNNGG 4 cut(s) 529, 548, 752, 971
BsmAI GTCTC 1 cut(s) 567
BsmI GAATGC 2 cut(s) 40, 679
BsnI GGCC 2 cut(s) 272, 522
Bso31I GGTCTC 1 cut(s) 567
Bsp119I TTCGAA 1 cut(s) 370
Bsp1286I GDGCHC 3 cut(s) 159, 480, 928
Bsp143I GATC 3 cut(s) 364, 538, 994
Bsp68I TCGCGA 1 cut(s) 981
BspACI CCGC 5 cut(s) 38, 189, 666, 764, 890
BspANI GGCC 2 cut(s) 272, 522
BspCNI CTCAG 2 cut(s) 340, 492
BspFNI CGCG 1 cut(s) 981
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 1 cut(s) 553
BspMAI CTGCAG 1 cut(s) 1054
BspPI GGATC 2 cut(s) 533, 1002
BspT104I TTCGAA 1 cut(s) 370
BspT107I GGYRCC 1 cut(s) 551
BspTNI GGTCTC 1 cut(s) 567
BsrBI CCGCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 861
BsrFI RCCGGY 1 cut(s) 522
BsrI ACTGG 4 cut(s) 533, 606, 893, 1068
BssAI RCCGGY 1 cut(s) 522
BssECI CCNNGG 2 cut(s) 384, 651
BssMI GATC 3 cut(s) 364, 538, 994
BssNI GRCGYC 2 cut(s) 656, 804
Bst2UI CCWGG 4 cut(s) 385, 632, 653, 911
Bst4CI ACNGT 5 cut(s) 222, 268, 380, 443, 551
Bst6I CTCTTC 2 cut(s) 97, 1164
BstACI GRCGYC 2 cut(s) 656, 804
BstBI TTCGAA 1 cut(s) 370
BstC8I GCNNGC 4 cut(s) 159, 193, 216, 524
BstDEI CTNAG 3 cut(s) 348, 479, 566
BstF5I GGATG 2 cut(s) 610, 757
BstFNI CGCG 1 cut(s) 981
BstKTI GATC 3 cut(s) 367, 541, 997
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 3 cut(s) 364, 538, 994
BstMWI GCNNNNNNNGC 4 cut(s) 173, 185, 772, 855
BstNI CCWGG 4 cut(s) 385, 632, 653, 911
BstNSI RCATGY 1 cut(s) 779
BstSCI CCNGG 4 cut(s) 383, 630, 651, 909
BstSFI CTRYAG 1 cut(s) 1050
BstSLI GKGCMC 1 cut(s) 928
BstUI CGCG 1 cut(s) 981
BstV1I GCAGC 7 cut(s) 148, 151, 163, 754, 842, 988, 1036
BstV2I GAAGAC 1 cut(s) 807
BstX2I RGATCY 2 cut(s) 364, 538
BstYI RGATCY 2 cut(s) 364, 538
BsuRI GGCC 2 cut(s) 272, 522
BtsCI GGATG 2 cut(s) 610, 757
BtsIMutI CAGTG 7 cut(s) 218, 273, 385, 465, 526, 787, 1061
BtuMI TCGCGA 1 cut(s) 981
Cac8I GCNNGC 4 cut(s) 159, 193, 216, 524
CaiI CAGNNNCTG 2 cut(s) 220, 1049
CciI TCATGA 1 cut(s) 688
Cfr10I RCCGGY 1 cut(s) 522
CseI GACGC 2 cut(s) 645, 812
Csp6I GTAC 3 cut(s) 209, 552, 919
CviAII CATG 4 cut(s) 689, 776, 845, 998
CviQI GTAC 3 cut(s) 209, 552, 919
DdeI CTNAG 3 cut(s) 348, 479, 566
DpnI GATC 3 cut(s) 366, 540, 996
DpnII GATC 3 cut(s) 364, 538, 994
EaeI YGGCCR 2 cut(s) 270, 520
Eam1104I CTCTTC 2 cut(s) 97, 1164
EarI CTCTTC 2 cut(s) 97, 1164
Ecl136II GAGCTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 567
Eco32I GATATC 1 cut(s) 977
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 4 cut(s) 489, 525, 819, 1044
EcoICRI GAGCTC 1 cut(s) 157
EcoRII CCWGG 4 cut(s) 383, 630, 651, 909
EcoRV GATATC 1 cut(s) 977
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 4 cut(s) 692, 779, 848, 1001
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FatI CATG 4 cut(s) 688, 775, 844, 997
Fnu4HI GCNGC 8 cut(s) 162, 165, 177, 189, 743, 831, 1002, 1050
FokI GGATG 2 cut(s) 617, 764
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 8 cut(s) 162, 165, 177, 189, 743, 831, 1002, 1050
FspBI CTAG 3 cut(s) 341, 395, 855
GluI GCNGC 8 cut(s) 162, 165, 177, 189, 743, 831, 1002, 1050
GsaI CCCAGC 2 cut(s) 1008, 1032
HaeIII GGCC 2 cut(s) 272, 522
HapII CCGG 1 cut(s) 523
HgaI GACGC 2 cut(s) 645, 812
Hin1I GRCGYC 2 cut(s) 656, 804
Hin1II CATG 4 cut(s) 692, 779, 848, 1001
HinfI GANTC 6 cut(s) 329, 356, 452, 818, 879, 1157
HpaII CCGG 1 cut(s) 523
HphI GGTGA 3 cut(s) 52, 680, 753
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 4 cut(s) 232, 250, 328, 505
Hpy188III TCNNGA 8 cut(s) 308, 360, 689, 797, 933, 980, 1094, 1141
Hpy8I GTNNAC 1 cut(s) 284
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 6 cut(s) 145, 199, 333, 500, 602, 1138
HpyCH4III ACNGT 5 cut(s) 222, 268, 380, 443, 551
HpyCH4V TGCA 8 cut(s) 226, 716, 728, 742, 775, 844, 1011, 1052
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 185, 772, 855
HpyF3I CTNAG 3 cut(s) 348, 479, 566
Hsp92I GRCGYC 2 cut(s) 656, 804
Hsp92II CATG 4 cut(s) 692, 779, 848, 1001
KpnI GGTACC 1 cut(s) 555
KroI GCCGGC 1 cut(s) 522
KroNI GCCGGC 1 cut(s) 524
Kzo9I GATC 3 cut(s) 364, 538, 994
LmnI GCTCC 2 cut(s) 154, 944
Lsp1109I GCAGC 7 cut(s) 148, 151, 163, 754, 842, 988, 1036
LweI GCATC 3 cut(s) 411, 1036, 1119
MaeI CTAG 3 cut(s) 341, 395, 855
MaeIII GTNAC 5 cut(s) 262, 437, 1018, 1039, 1111
MalI GATC 3 cut(s) 366, 540, 996
MbiI CCGCTC 1 cut(s) 191
MboI GATC 3 cut(s) 364, 538, 994
MboII GAAGA 7 cut(s) 36, 84, 359, 482, 812, 947, 1181
MflI RGATCY 2 cut(s) 364, 538
MhlI GDGCHC 3 cut(s) 159, 480, 928
MluCI AATT 8 cut(s) 10, 33, 126, 457, 696, 900, 1107, 1124
MlyI GAGTC 2 cut(s) 827, 888
MmeI TCCRAC 2 cut(s) 99, 120
MnlI CCTC 8 cut(s) 190, 206, 343, 346, 563, 817, 929, 1074
MroNI GCCGGC 1 cut(s) 522
MseI TTAA 2 cut(s) 417, 1152
MslI CAYNNNNRTG 2 cut(s) 780, 1186
MspI CCGG 1 cut(s) 523
MspR9I CCNGG 4 cut(s) 385, 632, 653, 911
Mva1269I GAATGC 2 cut(s) 40, 679
MvaI CCWGG 4 cut(s) 385, 632, 653, 911
MvnI CGCG 1 cut(s) 981
MwoI GCNNNNNNNGC 4 cut(s) 173, 185, 772, 855
NaeI GCCGGC 1 cut(s) 524
NdeII GATC 3 cut(s) 364, 538, 994
NgoMIV GCCGGC 1 cut(s) 522
NlaIII CATG 4 cut(s) 692, 779, 848, 1001
NlaIV GGNNCC 1 cut(s) 553
NmuCI GTSAC 3 cut(s) 262, 437, 1039
NruI TCGCGA 1 cut(s) 981
NspI RCATGY 1 cut(s) 779
NspV TTCGAA 1 cut(s) 370
PagI TCATGA 1 cut(s) 688
PctI GAATGC 2 cut(s) 40, 679
PdiI GCCGGC 1 cut(s) 524
PfeI GAWTC 4 cut(s) 329, 356, 452, 1157
PflMI CCANNNNNTGG 1 cut(s) 752
PkrI GCNGC 8 cut(s) 163, 166, 178, 190, 744, 832, 1003, 1051
PleI GAGTC 2 cut(s) 826, 887
PpsI GAGTC 2 cut(s) 826, 887
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 4 cut(s) 383, 630, 651, 909
PspFI CCCAGC 2 cut(s) 1004, 1028
PspGI CCWGG 4 cut(s) 383, 630, 651, 909
PspN4I GGNNCC 1 cut(s) 553
PstI CTGCAG 1 cut(s) 1054
PstNI CAGNNNCTG 2 cut(s) 220, 1049
PsuI RGATCY 2 cut(s) 364, 538
RruI TCGCGA 1 cut(s) 981
RsaI GTAC 3 cut(s) 210, 553, 920
RsaNI GTAC 3 cut(s) 209, 552, 919
RseI CAYNNNNRTG 2 cut(s) 780, 1186
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 2 cut(s) 417, 1152
SatI GCNGC 8 cut(s) 162, 165, 177, 189, 743, 831, 1002, 1050
Sau3AI GATC 3 cut(s) 364, 538, 994
SchI GAGTC 2 cut(s) 827, 888
ScrFI CCNGG 4 cut(s) 385, 632, 653, 911
SduI GDGCHC 3 cut(s) 159, 480, 928
SfaNI GCATC 3 cut(s) 411, 1036, 1119
SfcI CTRYAG 1 cut(s) 1050
SfuI TTCGAA 1 cut(s) 370
SmiMI CAYNNNNRTG 2 cut(s) 780, 1186
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 8 cut(s) 10, 33, 126, 457, 696, 900, 1107, 1124
SsiI CCGC 5 cut(s) 38, 189, 666, 764, 890
SspMI CTAG 3 cut(s) 341, 395, 855
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 4 cut(s) 383, 630, 651, 909
TaaI ACNGT 5 cut(s) 222, 268, 380, 443, 551
TaqI TCGA 2 cut(s) 130, 370
TasI AATT 8 cut(s) 10, 33, 126, 457, 696, 900, 1107, 1124
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 4 cut(s) 329, 356, 452, 1157
Tru1I TTAA 2 cut(s) 417, 1152
Tru9I TTAA 2 cut(s) 417, 1152
TscAI CASTG 7 cut(s) 225, 273, 385, 472, 533, 787, 1068
TseFI GTSAC 3 cut(s) 262, 437, 1039
TseI GCWGC 7 cut(s) 161, 164, 176, 742, 830, 1001, 1049
Tsp45I GTSAC 3 cut(s) 262, 437, 1039
TspDTI ATGAA 6 cut(s) 111, 227, 621, 747, 840, 1170
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 7 cut(s) 225, 273, 385, 472, 533, 787, 1068
Van91I CCANNNNNTGG 1 cut(s) 752
XapI RAATTY 1 cut(s) 33
XceI RCATGY 1 cut(s) 779
XspI CTAG 3 cut(s) 341, 395, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.