Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014531.1

Orthogroup ID

OG0008514

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 4682

Gene Structure 4681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014531.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1025 bp

atgtcttacgagaaggagctcgctgctgccaagaaagctgcctccgtcgccgctcgcctctgccagaaggtacaacaggcgcttttgcagtcagatgttcattcaaaatcagataaaagtcctgtcacagtggccgattatggttcacaggctcttgttagttttgttctggaaagggaacttccttccgaatcattctctcttgtagctgaggaggattcgggagatcttcgaatagacagtggcagggaaacactagaacgcatcacaaaacttgttaatgatactcttgccaacagtgacagttatagtgattctaatttgaccactgaagatgtgctcagggctattgacaatggcaaatctgaaggtgggtcttgtggccagcactgggttttagatcccattgacggtaccaaagggtttcttagaggagaccaatatgccatagcattagcattactggatgaaggaaaagttgtgttgggtgtcctggcttgtccaaatctccccctggcgtccattagcggtgataatcagcattcttctcatgataaaattggttgccttttctttgcaaaacttggtgcaggaacatatatgcagccattggatggttcatcaccactaaaggtgcatgtcagtgctactgaaaatcctgaagacgcctcattatttgagtcttatgaagcagcacactccttgcacggcttgtctagcaccattgtcaagaaacttggagtcaaagcaccgccagttagaattgacagccaggcaaagtatggggcactttccagaggagatggagcaatatatcttcgtttcccccataaaggatatcgcgagaaaatatgggatcatgctgctgggtgcattgttgttactgaagctggtggtgtagtcacagatgctgcaggaaatccattggacttttcaaaagggaggtatctggatcttgaaacaggcataattgttaccaaccagaaattgatgccatcactcttgaaggcagttaaagaatcctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00562 ko00920 ko01100 ko01120 ko04070 map00562 map00920 map01100 map01120 map04070

Pfam Domains

Protein Families

Inositol_P

Protein Analysis

341

Amino Acids

36.42

Weight (kDa)

5.42

Isoelectric Point (pI)

31.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008514)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63980
fragaria_vesca	FvH4_1g24470 FvH4_1g24470 FvH4_1g24470 FvH4_1g24470 FvH4_1g24470 FvH4_1g24470
malus_domestica	MD01G1008900.v1.1
prunus_persica	Prupe.4G272000_v2.0.a1
pyrus_communis	pycom01g01660
rosa_chinensis	RchiOBHm_Chr2g0121631 RchiOBHm_Chr2g0121731
rosa_laevigata	RLG00000018628
rosa_multiflora	Rmu_sc0014531.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122290
rosa_rugosa	Rorug02G0233900
rosa_samantha	Rh2AG291200 Rh2BG301600 Rh2BG301800 Rh2CG280400 Rh2CG280600 Rh2DG315700
rosa_wichuraiana	Rw2G023340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	413
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccBSI	CCGCTC	1 cut(s)	53
AccII	CGCG	1 cut(s)	843
AciI	CCGC	3 cut(s)	51, 528, 752
AclWI	GGATC	3 cut(s)	395, 864, 960
AcoI	YGGCCR	2 cut(s)	132, 382
AcuI	CTGAAG	4 cut(s)	351, 387, 681, 906
AcyI	GRCGYC	2 cut(s)	518, 666
AfaI	GTAC	2 cut(s)	72, 415
AfiI	CCNNNNNNNGG	4 cut(s)	391, 410, 614, 833
AgsI	TTSAA	4 cut(s)	105, 936, 959, 1006
AjnI	CCWGG	3 cut(s)	492, 513, 771
AluBI	AGCT	4 cut(s)	19, 38, 209, 890
AluI	AGCT	4 cut(s)	19, 38, 209, 890
Alw21I	GWGCWC	2 cut(s)	21, 342
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	3 cut(s)	395, 864, 960
AlwNI	CAGNNNCTG	1 cut(s)	911
AoxI	GGCC	2 cut(s)	132, 382
ApeKI	GCWGC	7 cut(s)	23, 26, 38, 604, 692, 863, 911
Asp718I	GGTACC	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	542, 615
AsuII	TTCGAA	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	790
BalI	TGGCCA	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	669
Bbv12I	GWGCWC	2 cut(s)	21, 342
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	7 cut(s)	10, 13, 25, 616, 704, 850, 898
BccI	CCATC	3 cut(s)	608, 797, 1003
BceAI	ACGGC	1 cut(s)	724
BciT130I	CCWGG	3 cut(s)	494, 515, 773
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	2 cut(s)	257, 717
BfmI	CTRYAG	1 cut(s)	912
BfoI	RGCGCY	1 cut(s)	83
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	8 cut(s)	24, 27, 39, 51, 605, 693, 864, 912
BlsI	GCNGC	8 cut(s)	25, 28, 40, 52, 606, 694, 865, 913
Bme1390I	CCNGG	3 cut(s)	494, 515, 773
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	3 cut(s)	494, 515, 773
BmrI	ACTGGG	1 cut(s)	400
BmsI	GCATC	3 cut(s)	273, 898, 981
BmuI	ACTGGG	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	669
Bpu10I	CCTNAGC	2 cut(s)	210, 341
Bpu14I	TTCGAA	1 cut(s)	232
BsaHI	GRCGYC	2 cut(s)	518, 666
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	513
Bsc4I	CCNNNNNNNGG	4 cut(s)	391, 410, 614, 833
Bse1I	ACTGG	3 cut(s)	395, 468, 755
BseBI	CCWGG	3 cut(s)	494, 515, 773
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	472, 619
BseLI	CCNNNNNNNGG	4 cut(s)	391, 410, 614, 833
BseMII	CTCAG	2 cut(s)	201, 355
BseNI	ACTGG	3 cut(s)	395, 468, 755
BseRI	GAGGAG	3 cut(s)	227, 447, 813
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	7 cut(s)	10, 13, 25, 616, 704, 850, 898
BseYI	CCCAGC	1 cut(s)	866
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	1 cut(s)	843
BshFI	GGCC	2 cut(s)	134, 384
BshNI	GGYRCC	1 cut(s)	413
BsiHKAI	GWGCWC	2 cut(s)	21, 342
BslI	CCNNNNNNNGG	4 cut(s)	391, 410, 614, 833
BsmAI	GTCTC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	2 cut(s)	134, 384
Bso31I	GGTCTC	1 cut(s)	429
Bsp119I	TTCGAA	1 cut(s)	232
Bsp1286I	GDGCHC	3 cut(s)	21, 342, 790
Bsp143I	GATC	4 cut(s)	226, 400, 856, 952
Bsp68I	TCGCGA	1 cut(s)	843
BspACI	CCGC	3 cut(s)	51, 528, 752
BspANI	GGCC	2 cut(s)	134, 384
BspCNI	CTCAG	2 cut(s)	202, 354
BspFNI	CGCG	1 cut(s)	843
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	415
BspMAI	CTGCAG	1 cut(s)	916
BspPI	GGATC	3 cut(s)	395, 864, 960
BspT104I	TTCGAA	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	429
BsrBI	CCGCTC	1 cut(s)	53
BsrI	ACTGG	3 cut(s)	395, 468, 755
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	4 cut(s)	226, 400, 856, 952
BssNI	GRCGYC	2 cut(s)	518, 666
Bst2UI	CCWGG	3 cut(s)	494, 515, 773
Bst4CI	ACNGT	5 cut(s)	130, 242, 299, 305, 413
BstACI	GRCGYC	2 cut(s)	518, 666
BstBI	TTCGAA	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	21, 55, 386
BstDEI	CTNAG	3 cut(s)	210, 341, 428
BstF5I	GGATG	2 cut(s)	472, 619
BstFNI	CGCG	1 cut(s)	843
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	4 cut(s)	229, 403, 859, 955
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	4 cut(s)	226, 400, 856, 952
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 47, 717
BstNI	CCWGG	3 cut(s)	494, 515, 773
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	3 cut(s)	492, 513, 771
BstSFI	CTRYAG	1 cut(s)	912
BstSLI	GKGCMC	1 cut(s)	790
BstUI	CGCG	1 cut(s)	843
BstV1I	GCAGC	7 cut(s)	10, 13, 25, 616, 704, 850, 898
BstV2I	GAAGAC	1 cut(s)	669
BstX2I	RGATCY	3 cut(s)	226, 400, 952
BstYI	RGATCY	3 cut(s)	226, 400, 952
BsuRI	GGCC	2 cut(s)	134, 384
BtsCI	GGATG	2 cut(s)	472, 619
BtsIMutI	CAGTG	6 cut(s)	135, 247, 304, 327, 388, 649
BtuMI	TCGCGA	1 cut(s)	843
Cac8I	GCNNGC	3 cut(s)	21, 55, 386
CaiI	CAGNNNCTG	1 cut(s)	911
CciI	TCATGA	1 cut(s)	550
CfoI	GCGC	1 cut(s)	82
CseI	GACGC	2 cut(s)	507, 674
Csp6I	GTAC	2 cut(s)	71, 414
CviAII	CATG	3 cut(s)	551, 638, 860
CviQI	GTAC	2 cut(s)	71, 414
DdeI	CTNAG	3 cut(s)	210, 341, 428
DpnI	GATC	4 cut(s)	228, 402, 858, 954
DpnII	GATC	4 cut(s)	226, 400, 856, 952
EaeI	YGGCCR	2 cut(s)	132, 382
Ecl136II	GAGCTC	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	839
Eco53kI	GAGCTC	1 cut(s)	19
Eco57I	CTGAAG	4 cut(s)	351, 387, 681, 906
EcoICRI	GAGCTC	1 cut(s)	19
EcoRII	CCWGG	3 cut(s)	492, 513, 771
EcoRV	GATATC	1 cut(s)	839
EcoT38I	GRGCYC	1 cut(s)	21
FaeI	CATG	3 cut(s)	554, 641, 863
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	3 cut(s)	550, 637, 859
Fnu4HI	GCNGC	8 cut(s)	24, 27, 39, 51, 605, 693, 864, 912
FokI	GGATG	2 cut(s)	479, 626
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	8 cut(s)	24, 27, 39, 51, 605, 693, 864, 912
FspBI	CTAG	2 cut(s)	257, 717
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	8 cut(s)	24, 27, 39, 51, 605, 693, 864, 912
GsaI	CCCAGC	1 cut(s)	870
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	2 cut(s)	134, 384
HgaI	GACGC	2 cut(s)	507, 674
HhaI	GCGC	1 cut(s)	82
Hin1I	GRCGYC	2 cut(s)	518, 666
Hin1II	CATG	3 cut(s)	554, 641, 863
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	6 cut(s)	191, 218, 314, 680, 741, 1019
HphI	GGTGA	2 cut(s)	542, 615
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	4 cut(s)	94, 112, 190, 367
Hpy8I	GTNNAC	1 cut(s)	146
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	6 cut(s)	7, 61, 195, 362, 464, 1000
HpyCH4III	ACNGT	5 cut(s)	130, 242, 299, 305, 413
HpyCH4V	TGCA	8 cut(s)	88, 578, 590, 604, 637, 706, 873, 914
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 47, 717
HpyF3I	CTNAG	3 cut(s)	210, 341, 428
Hsp92I	GRCGYC	2 cut(s)	518, 666
Hsp92II	CATG	3 cut(s)	554, 641, 863
HspAI	GCGC	1 cut(s)	80
KpnI	GGTACC	1 cut(s)	417
Kzo9I	GATC	4 cut(s)	226, 400, 856, 952
LmnI	GCTCC	2 cut(s)	16, 806
Lsp1109I	GCAGC	7 cut(s)	10, 13, 25, 616, 704, 850, 898
LweI	GCATC	3 cut(s)	273, 898, 981
MaeI	CTAG	2 cut(s)	257, 717
MaeIII	GTNAC	5 cut(s)	124, 299, 880, 901, 973
MalI	GATC	4 cut(s)	228, 402, 858, 954
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	4 cut(s)	226, 400, 856, 952
MboII	GAAGA	5 cut(s)	221, 344, 537, 674, 809
MflI	RGATCY	3 cut(s)	226, 400, 952
MhlI	GDGCHC	3 cut(s)	21, 342, 790
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	5 cut(s)	319, 558, 762, 969, 986
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	689, 750
MnlI	CCTC	8 cut(s)	52, 68, 205, 208, 425, 679, 791, 936
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	2 cut(s)	279, 1014
MslI	CAYNNNNRTG	1 cut(s)	642
Msp20I	TGGCCA	1 cut(s)	384
MspR9I	CCNGG	3 cut(s)	494, 515, 773
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	3 cut(s)	494, 515, 773
MvnI	CGCG	1 cut(s)	843
MwoI	GCNNNNNNNGC	3 cut(s)	35, 47, 717
NdeII	GATC	4 cut(s)	226, 400, 856, 952
NlaIII	CATG	3 cut(s)	554, 641, 863
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	3 cut(s)	124, 299, 901
NruI	TCGCGA	1 cut(s)	843
NspI	RCATGY	1 cut(s)	641
NspV	TTCGAA	1 cut(s)	232
PagI	TCATGA	1 cut(s)	550
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	4 cut(s)	191, 218, 314, 1019
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	8 cut(s)	25, 28, 40, 52, 606, 694, 865, 913
PleI	GAGTC	2 cut(s)	688, 749
PpsI	GAGTC	2 cut(s)	688, 749
Psp124BI	GAGCTC	1 cut(s)	21
Psp6I	CCWGG	3 cut(s)	492, 513, 771
PspFI	CCCAGC	1 cut(s)	866
PspGI	CCWGG	3 cut(s)	492, 513, 771
PspN4I	GGNNCC	1 cut(s)	415
PstI	CTGCAG	1 cut(s)	916
PstNI	CAGNNNCTG	1 cut(s)	911
PsuI	RGATCY	3 cut(s)	226, 400, 952
RruI	TCGCGA	1 cut(s)	843
RsaI	GTAC	2 cut(s)	72, 415
RsaNI	GTAC	2 cut(s)	71, 414
RseI	CAYNNNNRTG	1 cut(s)	642
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	279, 1014
SatI	GCNGC	8 cut(s)	24, 27, 39, 51, 605, 693, 864, 912
Sau3AI	GATC	4 cut(s)	226, 400, 856, 952
SchI	GAGTC	2 cut(s)	689, 750
ScrFI	CCNGG	3 cut(s)	494, 515, 773
SduI	GDGCHC	3 cut(s)	21, 342, 790
SetI	ASST	8 cut(s)	21, 40, 72, 211, 373, 636, 892, 947
SfaNI	GCATC	3 cut(s)	273, 898, 981
SfcI	CTRYAG	1 cut(s)	912
SfuI	TTCGAA	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	642
Sse9I	AATT	5 cut(s)	319, 558, 762, 969, 986
SsiI	CCGC	3 cut(s)	51, 528, 752
SspMI	CTAG	2 cut(s)	257, 717
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	3 cut(s)	492, 513, 771
TaaI	ACNGT	5 cut(s)	130, 242, 299, 305, 413
TaqI	TCGA	1 cut(s)	232
TasI	AATT	5 cut(s)	319, 558, 762, 969, 986
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	4 cut(s)	191, 218, 314, 1019
Tru1I	TTAA	2 cut(s)	279, 1014
Tru9I	TTAA	2 cut(s)	279, 1014
TscAI	CASTG	6 cut(s)	135, 247, 304, 334, 395, 649
TseFI	GTSAC	3 cut(s)	124, 299, 901
TseI	GCWGC	7 cut(s)	23, 26, 38, 604, 692, 863, 911
Tsp45I	GTSAC	3 cut(s)	124, 299, 901
TspDTI	ATGAA	4 cut(s)	89, 483, 609, 702
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	6 cut(s)	135, 247, 304, 334, 395, 649
Van91I	CCANNNNNTGG	1 cut(s)	614
XceI	RCATGY	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	779
XspI	CTAG	2 cut(s)	257, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.