Rroxscaffold_2G00122290

SAL1 phosphatase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008514
Physical Location & Seq
Reverse (-)
55265633 .. 55270489
4857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00122290.1

Sequence Viewer

Length: 1161 bp
ATGTCTTACGAGAAGGAGCTCGCTGCTGCCAAGAAAGCTGCCTCCAAGGTACAACAGGCGCTTTTGCAGTCAGATGTTCATTCAAAATCAGATAAAAGTCCTGTCACAGTGGCCGATTATGGTTTGTTTGCAAACTCTGCTGTGAATGCTTTCAATCAAATGCAGTCTACTTATATACTATTGAGGGGTTCACAGGCTCTTGTTAGTTTTGTTCTGGAAAGGGAACTTCCTTCCGAATCATTCTCTCTAGTAGCTGAGGAGGATTCGGGAGATCTTCGAATAGACAGTGGCAGGGAAACACTAGAACGCATCACAAAACTTGTTAATGATACTCTTGCCAACAGTGACAGTTATAGTGATTCTAATTTGACCACTGAAGATGTGCTCAGGGCTATTGACAATGGCAAATCTGAAGGTGGTTCTTGTGGCCGGCACTGGGTTTTAGATCCCATTGACGGTACCAAAGGGTTTCTTAGAGGAGACCAATATGCCATAGCATTAGCATTACTGGATGAAGGAAAAGTTGTGTTGGGTGTCCTGGCTTGTCCAAATCTCCCCCTGGCGTCCATTAGCAGTGATAATCAGCATTCTTCTCATGATAAAATTGGTTGCCTTTTCTTTGCAAAACTTGGTGCAGGAACATATATGCAGCCATTGGATGGTTCATCACCGCTAAAGGTGCATGTCAGTGCTACTGAAAATCCTGAAGACGCCTCATTCTTTGAGTCTTATGAAGCAGCACACTCCTTGCACGGCTTGTCTAGCACCATTGCCAAGAAACTTGGAGTCAAAGCACCGCCAGTTAGAATTGACAGCCAGGCAAAGTATGGGGCACTTTCCAGAGGAGATGGAGCAATATATCTTCGTTTCCCCCATAAAGGATATCGCGAGAAAATATGGGATCATGCTGCTGGGTGCATTGTTGTTACTGTTTGGGTAAATGGTGTTTCCTTCAATGTTTTATTGCGCATGGAAACCCTTGAGGAATGCATCGAAGCTGGTGGTGTAGTCACAGATGCTGCAGGAAATCCATTGGACTTTTCAAAAGGGAGGTATCTGGATCTTGAAACAGGCATAATTGTTACCAACCAGAAATTGATGCCATCACTCTTGAAGGCAGTTAAAGAATCCTTGGAGGAAGAGAAAGTTTCATCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00562 ko00920 ko01100 ko01120 ko04070 map00562 map00920 map01100 map01120 map04070
Pfam Domains
Protein Families
Inositol_P

Protein Analysis

386

Amino Acids

41.63

Weight (kDa)

5.22

Isoelectric Point (pI)

36.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inositol_P PF00459 62 - 310 2.4e-35 Inositol monophosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 968
Acc65I GGTACC 1 cut(s) 458
AccB1I GGYRCC 1 cut(s) 458
AccB7I CCANNNNNTGG 1 cut(s) 659
AccI GTMKAC 1 cut(s) 167
AccII CGCG 1 cut(s) 888
AciI CCGC 2 cut(s) 671, 797
AclWI GGATC 3 cut(s) 440, 909, 1068
AcoI YGGCCR 2 cut(s) 111, 427
AcuI CTGAAG 3 cut(s) 396, 432, 726
AcyI GRCGYC 2 cut(s) 563, 711
AfaI GTAC 2 cut(s) 51, 460
AfiI CCNNNNNNNGG 4 cut(s) 436, 455, 659, 878
AgsI TTSAA 6 cut(s) 84, 154, 955, 1044, 1067, 1114
AjnI CCWGG 3 cut(s) 537, 558, 816
AluBI AGCT 4 cut(s) 19, 38, 254, 998
AluI AGCT 4 cut(s) 19, 38, 254, 998
Alw21I GWGCWC 2 cut(s) 21, 387
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 3 cut(s) 440, 909, 1068
AlwNI CAGNNNCTG 1 cut(s) 1019
AoxI GGCC 2 cut(s) 111, 427
ApeKI GCWGC 7 cut(s) 23, 26, 38, 649, 737, 908, 1019
Asp700I GAANNNNTTC 1 cut(s) 149
Asp718I GGTACC 1 cut(s) 458
AspLEI GCGC 2 cut(s) 61, 969
AsuHPI GGTGA 1 cut(s) 660
AsuII TTCGAA 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 835
BanI GGYRCC 1 cut(s) 458
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 21, 387
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 7 cut(s) 10, 13, 25, 661, 749, 895, 1006
BccI CCATC 3 cut(s) 653, 842, 1111
BceAI ACGGC 1 cut(s) 769
BciT130I CCWGG 3 cut(s) 539, 560, 818
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 3 cut(s) 248, 302, 762
BfmI CTRYAG 1 cut(s) 1020
BfoI RGCGCY 1 cut(s) 62
BglII AGATCT 1 cut(s) 271
BisI GCNGC 7 cut(s) 24, 27, 39, 650, 738, 909, 1020
BlsI GCNGC 7 cut(s) 25, 28, 40, 651, 739, 910, 1021
Bme1390I CCNGG 3 cut(s) 539, 560, 818
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 3 cut(s) 539, 560, 818
BmrI ACTGGG 1 cut(s) 445
BmsI GCATC 4 cut(s) 318, 999, 1006, 1089
BmuI ACTGGG 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 714
Bpu10I CCTNAGC 2 cut(s) 255, 386
Bpu14I TTCGAA 1 cut(s) 277
BpuEI CTTGAG 1 cut(s) 1001
BsaHI GRCGYC 2 cut(s) 563, 711
BsaI GGTCTC 1 cut(s) 474
BsaJI CCNNGG 3 cut(s) 45, 558, 1131
Bsc4I CCNNNNNNNGG 4 cut(s) 436, 455, 659, 878
Bse118I RCCGGY 1 cut(s) 429
Bse1I ACTGG 3 cut(s) 440, 513, 800
Bse3DI GCAATG 1 cut(s) 768
BseBI CCWGG 3 cut(s) 539, 560, 818
BseDI CCNNGG 3 cut(s) 45, 558, 1131
BseGI GGATG 2 cut(s) 517, 664
BseLI CCNNNNNNNGG 4 cut(s) 436, 455, 659, 878
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 2 cut(s) 246, 400
BseNI ACTGG 3 cut(s) 440, 513, 800
BseRI GAGGAG 3 cut(s) 272, 492, 858
BseSI GKGCMC 1 cut(s) 835
BseXI GCAGC 7 cut(s) 10, 13, 25, 661, 749, 895, 1006
BseYI CCCAGC 1 cut(s) 911
BsgI GTGCAG 1 cut(s) 654
Bsh1236I CGCG 1 cut(s) 888
BshFI GGCC 2 cut(s) 113, 429
BshNI GGYRCC 1 cut(s) 458
BsiHKAI GWGCWC 2 cut(s) 21, 387
BsiSI CCGG 1 cut(s) 430
BslI CCNNNNNNNGG 4 cut(s) 436, 455, 659, 878
BsmAI GTCTC 1 cut(s) 474
BsmI GAATGC 3 cut(s) 151, 586, 992
BsnI GGCC 2 cut(s) 113, 429
Bso31I GGTCTC 1 cut(s) 474
Bsp119I TTCGAA 1 cut(s) 277
Bsp1286I GDGCHC 3 cut(s) 21, 387, 835
Bsp143I GATC 4 cut(s) 271, 445, 901, 1060
Bsp68I TCGCGA 1 cut(s) 888
BspACI CCGC 2 cut(s) 671, 797
BspANI GGCC 2 cut(s) 113, 429
BspCNI CTCAG 2 cut(s) 247, 399
BspFNI CGCG 1 cut(s) 888
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 1 cut(s) 460
BspMAI CTGCAG 1 cut(s) 1024
BspPI GGATC 3 cut(s) 440, 909, 1068
BspT104I TTCGAA 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 474
BsrDI GCAATG 1 cut(s) 768
BsrFI RCCGGY 1 cut(s) 429
BsrI ACTGG 3 cut(s) 440, 513, 800
BssAI RCCGGY 1 cut(s) 429
BssECI CCNNGG 3 cut(s) 45, 558, 1131
BssMI GATC 4 cut(s) 271, 445, 901, 1060
BssNI GRCGYC 2 cut(s) 563, 711
BssT1I CCWWGG 2 cut(s) 45, 1131
Bst2UI CCWGG 3 cut(s) 539, 560, 818
Bst4CI ACNGT 6 cut(s) 109, 287, 344, 350, 458, 931
Bst6I CTCTTC 1 cut(s) 1134
BstACI GRCGYC 2 cut(s) 563, 711
BstAPI GCANNNNNTGC 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 277
BstC8I GCNNGC 2 cut(s) 21, 431
BstDEI CTNAG 3 cut(s) 255, 386, 473
BstF5I GGATG 2 cut(s) 517, 664
BstFNI CGCG 1 cut(s) 888
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 2 cut(s) 61, 969
BstKTI GATC 4 cut(s) 274, 448, 904, 1063
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 4 cut(s) 271, 445, 901, 1060
BstMWI GCNNNNNNNGC 5 cut(s) 35, 137, 146, 679, 762
BstNI CCWGG 3 cut(s) 539, 560, 818
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 3 cut(s) 537, 558, 816
BstSFI CTRYAG 1 cut(s) 1020
BstSLI GKGCMC 1 cut(s) 835
BstUI CGCG 1 cut(s) 888
BstV1I GCAGC 7 cut(s) 10, 13, 25, 661, 749, 895, 1006
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 3 cut(s) 271, 445, 1060
BstYI RGATCY 3 cut(s) 271, 445, 1060
BsuRI GGCC 2 cut(s) 113, 429
BtsCI GGATG 2 cut(s) 517, 664
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 7 cut(s) 114, 292, 349, 372, 433, 580, 694
BtuMI TCGCGA 1 cut(s) 888
Cac8I GCNNGC 2 cut(s) 21, 431
CaiI CAGNNNCTG 1 cut(s) 1019
CciI TCATGA 1 cut(s) 595
CfoI GCGC 2 cut(s) 61, 969
Cfr10I RCCGGY 1 cut(s) 429
CseI GACGC 2 cut(s) 552, 719
Csp6I GTAC 2 cut(s) 50, 459
CviAII CATG 4 cut(s) 596, 683, 905, 970
CviQI GTAC 2 cut(s) 50, 459
DdeI CTNAG 3 cut(s) 255, 386, 473
DpnI GATC 4 cut(s) 273, 447, 903, 1062
DpnII GATC 4 cut(s) 271, 445, 901, 1060
EaeI YGGCCR 2 cut(s) 111, 427
Eam1104I CTCTTC 1 cut(s) 1134
EarI CTCTTC 1 cut(s) 1134
Ecl136II GAGCTC 1 cut(s) 19
Eco130I CCWWGG 2 cut(s) 45, 1131
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 474
Eco32I GATATC 1 cut(s) 884
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 3 cut(s) 396, 432, 726
EcoICRI GAGCTC 1 cut(s) 19
EcoRII CCWGG 3 cut(s) 537, 558, 816
EcoRV GATATC 1 cut(s) 884
EcoT14I CCWWGG 2 cut(s) 45, 1131
EcoT22I ATGCAT 1 cut(s) 992
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 2 cut(s) 45, 1131
FaeI CATG 4 cut(s) 599, 686, 908, 973
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FatI CATG 4 cut(s) 595, 682, 904, 969
FblI GTMKAC 1 cut(s) 167
Fnu4HI GCNGC 7 cut(s) 24, 27, 39, 650, 738, 909, 1020
FokI GGATG 2 cut(s) 524, 671
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 7 cut(s) 24, 27, 39, 650, 738, 909, 1020
FspBI CTAG 3 cut(s) 248, 302, 762
FspI TGCGCA 1 cut(s) 968
GlaI GCGC 2 cut(s) 60, 968
GluI GCNGC 7 cut(s) 24, 27, 39, 650, 738, 909, 1020
GsaI CCCAGC 1 cut(s) 915
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 2 cut(s) 113, 429
HapII CCGG 1 cut(s) 430
HgaI GACGC 2 cut(s) 552, 719
HhaI GCGC 2 cut(s) 61, 969
Hin1I GRCGYC 2 cut(s) 563, 711
Hin1II CATG 4 cut(s) 599, 686, 908, 973
Hin6I GCGC 2 cut(s) 59, 967
HinP1I GCGC 2 cut(s) 59, 967
HinfI GANTC 6 cut(s) 236, 263, 359, 725, 786, 1127
HpaII CCGG 1 cut(s) 430
HphI GGTGA 1 cut(s) 660
Hpy166II GTNNAC 2 cut(s) 168, 191
Hpy188I TCNGA 4 cut(s) 73, 91, 235, 412
Hpy188III TCNNGA 9 cut(s) 215, 267, 596, 704, 840, 887, 1058, 1064, 1111
Hpy8I GTNNAC 2 cut(s) 168, 191
HpyAV CCTTC 6 cut(s) 7, 240, 407, 509, 961, 1108
HpyCH4III ACNGT 6 cut(s) 109, 287, 344, 350, 458, 931
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 137, 146, 679, 762
HpyF3I CTNAG 3 cut(s) 255, 386, 473
Hsp92I GRCGYC 2 cut(s) 563, 711
Hsp92II CATG 4 cut(s) 599, 686, 908, 973
HspAI GCGC 2 cut(s) 59, 967
KpnI GGTACC 1 cut(s) 462
KroI GCCGGC 1 cut(s) 429
KroNI GCCGGC 1 cut(s) 431
Kzo9I GATC 4 cut(s) 271, 445, 901, 1060
LmnI GCTCC 2 cut(s) 16, 851
Lsp1109I GCAGC 7 cut(s) 10, 13, 25, 661, 749, 895, 1006
LweI GCATC 4 cut(s) 318, 999, 1006, 1089
MaeI CTAG 3 cut(s) 248, 302, 762
MaeIII GTNAC 5 cut(s) 103, 344, 925, 1009, 1081
MalI GATC 4 cut(s) 273, 447, 903, 1062
MboI GATC 4 cut(s) 271, 445, 901, 1060
MboII GAAGA 6 cut(s) 266, 389, 582, 719, 854, 1151
MflI RGATCY 3 cut(s) 271, 445, 1060
MhlI GDGCHC 3 cut(s) 21, 387, 835
MluCI AATT 5 cut(s) 364, 603, 807, 1077, 1094
MlyI GAGTC 2 cut(s) 734, 795
Mph1103I ATGCAT 1 cut(s) 992
MroNI GCCGGC 1 cut(s) 429
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 2 cut(s) 324, 1122
MslI CAYNNNNRTG 2 cut(s) 687, 1156
MspI CCGG 1 cut(s) 430
MspR9I CCNGG 3 cut(s) 539, 560, 818
Mva1269I GAATGC 3 cut(s) 151, 586, 992
MvaI CCWGG 3 cut(s) 539, 560, 818
MvnI CGCG 1 cut(s) 888
MwoI GCNNNNNNNGC 5 cut(s) 35, 137, 146, 679, 762
NaeI GCCGGC 1 cut(s) 431
NdeII GATC 4 cut(s) 271, 445, 901, 1060
NgoMIV GCCGGC 1 cut(s) 429
NlaIII CATG 4 cut(s) 599, 686, 908, 973
NlaIV GGNNCC 1 cut(s) 460
NmuCI GTSAC 3 cut(s) 103, 344, 1009
NruI TCGCGA 1 cut(s) 888
NsbI TGCGCA 1 cut(s) 968
NsiI ATGCAT 1 cut(s) 992
NspI RCATGY 1 cut(s) 686
NspV TTCGAA 1 cut(s) 277
PagI TCATGA 1 cut(s) 595
PctI GAATGC 3 cut(s) 151, 586, 992
PdiI GCCGGC 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 4 cut(s) 236, 263, 359, 1127
PflMI CCANNNNNTGG 1 cut(s) 659
PkrI GCNGC 7 cut(s) 25, 28, 40, 651, 739, 910, 1021
PleI GAGTC 2 cut(s) 733, 794
PpsI GAGTC 2 cut(s) 733, 794
Psp124BI GAGCTC 1 cut(s) 21
Psp6I CCWGG 3 cut(s) 537, 558, 816
PspFI CCCAGC 1 cut(s) 911
PspGI CCWGG 3 cut(s) 537, 558, 816
PspN4I GGNNCC 1 cut(s) 460
PstI CTGCAG 1 cut(s) 1024
PstNI CAGNNNCTG 1 cut(s) 1019
PsuI RGATCY 3 cut(s) 271, 445, 1060
RruI TCGCGA 1 cut(s) 888
RsaI GTAC 2 cut(s) 51, 460
RsaNI GTAC 2 cut(s) 50, 459
RseI CAYNNNNRTG 2 cut(s) 687, 1156
SacI GAGCTC 1 cut(s) 21
SaqAI TTAA 2 cut(s) 324, 1122
SatI GCNGC 7 cut(s) 24, 27, 39, 650, 738, 909, 1020
Sau3AI GATC 4 cut(s) 271, 445, 901, 1060
SchI GAGTC 2 cut(s) 734, 795
ScrFI CCNGG 3 cut(s) 539, 560, 818
SduI GDGCHC 3 cut(s) 21, 387, 835
SetI ASST 8 cut(s) 21, 40, 51, 256, 418, 681, 1000, 1055
SfaNI GCATC 4 cut(s) 318, 999, 1006, 1089
SfcI CTRYAG 1 cut(s) 1020
SfuI TTCGAA 1 cut(s) 277
SmiMI CAYNNNNRTG 2 cut(s) 687, 1156
SmlI CTYRAG 1 cut(s) 980
SmoI CTYRAG 1 cut(s) 980
Sse9I AATT 5 cut(s) 364, 603, 807, 1077, 1094
SsiI CCGC 2 cut(s) 671, 797
SspMI CTAG 3 cut(s) 248, 302, 762
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 3 cut(s) 537, 558, 816
StyI CCWWGG 2 cut(s) 45, 1131
TaaI ACNGT 6 cut(s) 109, 287, 344, 350, 458, 931
TaqI TCGA 2 cut(s) 277, 993
TasI AATT 5 cut(s) 364, 603, 807, 1077, 1094
TfiI GAWTC 4 cut(s) 236, 263, 359, 1127
Tru1I TTAA 2 cut(s) 324, 1122
Tru9I TTAA 2 cut(s) 324, 1122
TscAI CASTG 7 cut(s) 114, 292, 349, 379, 440, 580, 694
TseFI GTSAC 3 cut(s) 103, 344, 1009
TseI GCWGC 7 cut(s) 23, 26, 38, 649, 737, 908, 1019
Tsp45I GTSAC 3 cut(s) 103, 344, 1009
TspDTI ATGAA 5 cut(s) 68, 528, 654, 747, 1140
TspRI CASTG 7 cut(s) 114, 292, 349, 379, 440, 580, 694
Van91I CCANNNNNTGG 1 cut(s) 659
XceI RCATGY 1 cut(s) 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 824
XmiI GTMKAC 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 3 cut(s) 248, 302, 762
Zsp2I ATGCAT 1 cut(s) 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.