Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014244

Physical Location & Seq

Genomic Coordinates Forward (+)

16644375 .. 16648412

Gene Structure 4038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGGAGGATTGGTTTGCTCGTTTCAGATTTCATAATCTCATTCATGTGGGTATCATCAGGTGTTTTTGTCAAGAAATTTGTGCACAATGTTTTGGGTTTCTCTCATGAACCCACTGCTGAGATTCTCAAGTCCGCTCTTTCAATTGTCAACATGTTTTTCTTTGCTTTCTTGGCTAAGCTTACCAAGGGTGGCACCTACAATCCTCTCACCGTTTTCTCGGATGCCATCACCGGCGATTTCAGCCGTTTCTTATTCACTGTTGCTGCCAGAGTCCCTGCTCAGGTTCTTGGCTCTGTTGCTGGAGTTAGGTTCATAATGGGGACCTTTCCTGGAATAGGTCTCGGGCCACGTTTGACTGTTGACATCCATAAAGGGGCCCTTACAGAAGGATTACTGGCATATGCAATCGTTACTATCTCACTTGGTCTTTCCAGAAATATCCCGGGGAGCTTTTTCAGGAAGACATGGATCTCAAGTGTTTCGAAGTTAACTCTGCATATTCTTGGCTCTGATCTGACTGGTGGTTGCATGAACCCAGCTTCTGTAATGGGATGGGCTTATGCTCGCGGCGACCATATCACCAAGGAGCATATACTTGTTTATTGGCTTGCCCCAATAGAGGCAACTCTACTTGCAGTATGGACATCTAGGTTGCTGTTTCCACCAAAAGAGGACAAGAAAGCTAAAGTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

233

Amino Acids

25.25

Weight (kDa)

9.75

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	8 - 215	1e-06	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56950 AT3G56950
fragaria_vesca	FvH4_1g24870
malus_domestica	MD02G1144000.v1.1 MD15G1257400.v1.1
prunus_persica	Prupe.7G020600_v2.0.a1
pyrus_communis	pycom02g11390 pycom15g22520
rosa_chinensis	RchiOBHm_Chr2g0122531
rosa_laevigata	RLG00000018682
rosa_roxburghii	Rroxscaffold_2G00121500
rosa_rugosa	Rorug02G0239300
rosa_samantha	Rh2AG298000 Rh2BG306700 Rh2CG284800 Rh2DG321600
rosa_wichuraiana	Rw2G023690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccBSI	CCGCTC	1 cut(s)	137
AccII	CGCG	1 cut(s)	570
AciI	CCGC	2 cut(s)	135, 570
AclWI	GGATC	1 cut(s)	479
AcsI	RAATTY	1 cut(s)	77
AfiI	CCNNNNNNNGG	4 cut(s)	283, 338, 376, 622
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	144
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	4 cut(s)	181, 453, 542, 686
AluI	AGCT	4 cut(s)	181, 453, 542, 686
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	347
Alw44I	GTGCAC	1 cut(s)	83
AlwI	GGATC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	545
Ama87I	CYCGRG	2 cut(s)	344, 445
AoxI	GGCC	2 cut(s)	347, 378
ApaI	GGGCCC	1 cut(s)	382
ApaLI	GTGCAC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	77
AspS9I	GGNCC	4 cut(s)	324, 347, 378, 379
AsuC2I	CCSGG	2 cut(s)	446, 447
AsuHPI	GGTGA	3 cut(s)	202, 223, 574
AsuII	TTCGAA	1 cut(s)	485
AvaI	CYCGRG	2 cut(s)	344, 445
AvaII	GGWCC	1 cut(s)	324
BaeGI	GKGCMC	2 cut(s)	87, 382
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	2 cut(s)	236, 549
BceAI	ACGGC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	333
BcnI	CCSGG	2 cut(s)	446, 447
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	651
BisI	GCNGC	2 cut(s)	267, 571
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	2 cut(s)	268, 572
Bme1390I	CCNGG	3 cut(s)	333, 446, 447
Bme18I	GGWCC	1 cut(s)	324
BmeT110I	CYCGRG	2 cut(s)	344, 445
BmgT120I	GGNCC	4 cut(s)	324, 347, 378, 379
BmiI	GGNNCC	4 cut(s)	196, 325, 379, 380
BmrFI	CCNGG	3 cut(s)	333, 446, 447
BmsI	GCATC	1 cut(s)	214
BpiI	GAAGAC	1 cut(s)	470
BpmI	CTGGAG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	282
Bpu1102I	GCTNAGC	1 cut(s)	177
Bpu14I	TTCGAA	1 cut(s)	485
BpuEI	CTTGAG	2 cut(s)	113, 460
BpuMI	CCSGG	2 cut(s)	446, 447
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	4 cut(s)	186, 445, 446, 585
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 338, 376, 622
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	2 cut(s)	402, 526
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	4 cut(s)	186, 445, 446, 585
BseGI	GGATG	3 cut(s)	229, 366, 560
BseLI	CCNNNNNNNGG	4 cut(s)	283, 338, 376, 622
BseMII	CTCAG	2 cut(s)	111, 296
BseNI	ACTGG	2 cut(s)	402, 526
BseSI	GKGCMC	2 cut(s)	87, 382
BseXI	GCAGC	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	2 cut(s)	349, 380
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	87
BsiHKCI	CYCGRG	2 cut(s)	344, 445
BsiSI	CCGG	2 cut(s)	234, 446
BslFI	GGGAC	2 cut(s)	260, 337
BslI	CCNNNNNNNGG	4 cut(s)	283, 338, 376, 622
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	2 cut(s)	260, 337
BsnI	GGCC	2 cut(s)	349, 380
Bso31I	GGTCTC	1 cut(s)	347
BsoBI	CYCGRG	2 cut(s)	344, 445
Bsp119I	TTCGAA	1 cut(s)	485
Bsp120I	GGGCCC	1 cut(s)	378
Bsp1286I	GDGCHC	2 cut(s)	87, 382
Bsp143I	GATC	2 cut(s)	471, 514
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	2 cut(s)	135, 570
BspANI	GGCC	2 cut(s)	349, 380
BspCNI	CTCAG	2 cut(s)	112, 295
BspFNI	CGCG	1 cut(s)	570
BspHI	TCATGA	1 cut(s)	106
BspLI	GGNNCC	4 cut(s)	196, 325, 379, 380
BspPI	GGATC	1 cut(s)	479
BspT104I	TTCGAA	1 cut(s)	485
BspT107I	GGYRCC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	347
BsrBI	CCGCTC	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	402, 526
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	4 cut(s)	186, 445, 446, 585
BssMI	GATC	2 cut(s)	471, 514
BssT1I	CCWWGG	2 cut(s)	186, 585
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	3 cut(s)	214, 262, 361
BstBI	TTCGAA	1 cut(s)	485
BstC8I	GCNNGC	2 cut(s)	568, 612
BstDEI	CTNAG	3 cut(s)	120, 177, 282
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	3 cut(s)	229, 366, 560
BstFNI	CGCG	1 cut(s)	570
BstKTI	GATC	2 cut(s)	474, 517
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	2 cut(s)	471, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 243
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	3 cut(s)	331, 444, 445
BstSLI	GKGCMC	2 cut(s)	87, 382
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
BsuRI	GGCC	2 cut(s)	349, 380
BtsCI	GGATG	3 cut(s)	229, 366, 560
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 258
Cac8I	GCNNGC	2 cut(s)	568, 612
CaiI	CAGNNNCTG	1 cut(s)	545
CciI	TCATGA	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	4 cut(s)	324, 347, 378, 379
Cfr9I	CCCGGG	1 cut(s)	445
CviAII	CATG	5 cut(s)	46, 107, 154, 468, 532
DdeI	CTNAG	3 cut(s)	120, 177, 282
DpnI	GATC	2 cut(s)	473, 516
DpnII	GATC	2 cut(s)	471, 514
Eco130I	CCWWGG	2 cut(s)	186, 585
Eco24I	GRGCYC	1 cut(s)	382
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	324
Eco88I	CYCGRG	2 cut(s)	344, 445
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoO109I	RGGNCCY	3 cut(s)	324, 378, 379
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	186, 585
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	2 cut(s)	186, 585
FaeI	CATG	5 cut(s)	49, 110, 157, 471, 535
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FaqI	GGGAC	2 cut(s)	260, 337
FatI	CATG	5 cut(s)	45, 106, 153, 467, 531
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	2 cut(s)	267, 571
FokI	GGATG	3 cut(s)	236, 353, 567
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	2 cut(s)	267, 571
FspBI	CTAG	1 cut(s)	651
GluI	GCNGC	2 cut(s)	267, 571
GsaI	CCCAGC	1 cut(s)	542
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	349, 380
HapII	CCGG	2 cut(s)	234, 446
Hin1II	CATG	5 cut(s)	49, 110, 157, 471, 535
HincII	GTYRAC	3 cut(s)	151, 364, 492
HindII	GTYRAC	3 cut(s)	151, 364, 492
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	2 cut(s)	124, 273
HpaI	GTTAAC	1 cut(s)	492
HpaII	CCGG	2 cut(s)	234, 446
HphI	GGTGA	3 cut(s)	202, 223, 574
Hpy166II	GTNNAC	4 cut(s)	85, 151, 364, 492
Hpy188I	TCNGA	4 cut(s)	28, 223, 514, 519
Hpy188III	TCNNGA	4 cut(s)	73, 107, 435, 460
Hpy8I	GTNNAC	4 cut(s)	85, 151, 364, 492
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	3 cut(s)	214, 262, 361
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	5 cut(s)	85, 407, 499, 531, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 243
HpyF3I	CTNAG	3 cut(s)	120, 177, 282
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	5 cut(s)	49, 110, 157, 471, 535
KspAI	GTTAAC	1 cut(s)	492
Kzo9I	GATC	2 cut(s)	471, 514
LmnI	GCTCC	2 cut(s)	450, 589
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	651
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	2 cut(s)	473, 516
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	2 cut(s)	471, 514
MboII	GAAGA	1 cut(s)	475
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	1 cut(s)	471
MhlI	GDGCHC	2 cut(s)	87, 382
MluCI	AATT	2 cut(s)	77, 144
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	3 cut(s)	216, 616, 667
MseI	TTAA	1 cut(s)	491
MslI	CAYNNNNRTG	1 cut(s)	46
MspI	CCGG	2 cut(s)	234, 446
MspR9I	CCNGG	3 cut(s)	333, 446, 447
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	2 cut(s)	173, 243
NciI	CCSGG	2 cut(s)	446, 447
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	2 cut(s)	471, 514
NlaIII	CATG	5 cut(s)	49, 110, 157, 471, 535
NlaIV	GGNNCC	4 cut(s)	196, 325, 379, 380
NspI	RCATGY	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	485
PagI	TCATGA	1 cut(s)	106
PciI	ACATGT	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	124
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	268, 572
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	324
PscI	ACATGT	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	4 cut(s)	196, 325, 379, 380
PspOMI	GGGCCC	1 cut(s)	378
PspPI	GGNCC	4 cut(s)	324, 347, 378, 379
PspPPI	RGGWCCY	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	471
RseI	CAYNNNNRTG	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	2 cut(s)	267, 571
Sau3AI	GATC	2 cut(s)	471, 514
Sau96I	GGNCC	4 cut(s)	324, 347, 378, 379
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	3 cut(s)	333, 446, 447
SduI	GDGCHC	2 cut(s)	87, 382
SfaNI	GCATC	1 cut(s)	214
SfuI	TTCGAA	1 cut(s)	485
SgrAI	CRCCGGYG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	324
SmaI	CCCGGG	1 cut(s)	447
SmiMI	CAYNNNNRTG	1 cut(s)	46
SmlI	CTYRAG	2 cut(s)	128, 475
SmoI	CTYRAG	2 cut(s)	128, 475
Sse9I	AATT	2 cut(s)	77, 144
SsiI	CCGC	2 cut(s)	135, 570
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	3 cut(s)	331, 444, 445
StyI	CCWWGG	2 cut(s)	186, 585
TaaI	ACNGT	3 cut(s)	214, 262, 361
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	1 cut(s)	485
TasI	AATT	2 cut(s)	77, 144
TauI	GCSGC	1 cut(s)	573
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	2 cut(s)	121, 265
TseI	GCWGC	1 cut(s)	266
TspDTI	ATGAA	5 cut(s)	22, 34, 123, 304, 548
TspMI	CCCGGG	1 cut(s)	445
TspRI	CASTG	2 cut(s)	121, 265
VneI	GTGCAC	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	324
XagI	CCTNNNNNAGG	1 cut(s)	336
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	157
XmaI	CCCGGG	1 cut(s)	445
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.