Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014244

Physical Location & Seq

Genomic Coordinates Reverse (-)

54135285 .. 54139067

Gene Structure 3783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAAGACATGGATCTCAAGTGTTTCCAAGTTAACTCTTCATATTCTTGGCTCTGATCTGACTGGTGGTTGCATGAACCCAGCTGCTGTGATGGGATGGGCTTATGCTCGCGGAGACCATATAACCAAGGAACATATTCTTGTTTATTGGCTTGCCCCAATAGAGGCAACCCTACTGGCAGTATGGACATTTAGGTTGCTATTTCCACCCAAAGAGGACAAGAAAGCTAAAGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

79

Amino Acids

8.84

Weight (kDa)

8.85

Isoelectric Point (pI)

51.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56950 AT3G56950
fragaria_vesca	FvH4_1g24870
malus_domestica	MD02G1144000.v1.1 MD15G1257400.v1.1
prunus_persica	Prupe.7G020600_v2.0.a1
pyrus_communis	pycom02g11390 pycom15g22520
rosa_chinensis	RchiOBHm_Chr2g0122531
rosa_laevigata	RLG00000018682
rosa_roxburghii	Rroxscaffold_2G00121500
rosa_rugosa	Rorug02G0239300
rosa_samantha	Rh2AG298000 Rh2BG306700 Rh2CG284800 Rh2DG321600
rosa_wichuraiana	Rw2G023690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	111
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	163
AluBI	AGCT	2 cut(s)	83, 227
AluI	AGCT	2 cut(s)	83, 227
Alw26I	GTCTC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	2 cut(s)	85, 90
BcoDI	GTCTC	1 cut(s)	108
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	67, 180
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseNI	ACTGG	2 cut(s)	67, 180
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	12, 55
BspACI	CCGC	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	111
BspPI	GGATC	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	67, 180
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	12, 55
BssT1I	CCWWGG	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	109, 153
BstF5I	GGATG	1 cut(s)	101
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	15, 58
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	2 cut(s)	12, 55
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	101
Cac8I	GCNNGC	2 cut(s)	109, 153
CaiI	CAGNNNCTG	1 cut(s)	86
CviAII	CATG	2 cut(s)	9, 73
CviJI	RGCY	5 cut(s)	51, 83, 101, 151, 227
CviKI_1	RGCY	5 cut(s)	51, 83, 101, 151, 227
DpnI	GATC	2 cut(s)	14, 57
DpnII	GATC	2 cut(s)	12, 55
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	12, 76
FaiI	YATR	8 cut(s)	10, 42, 74, 105, 120, 122, 135, 184
FatI	CATG	2 cut(s)	8, 72
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	84
GsaI	CCCAGC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	12, 76
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HpaI	GTTAAC	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	55, 60
Hpy8I	GTNNAC	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	12, 76
KspAI	GTTAAC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	12, 55
LpnPI	CCDG	3 cut(s)	48, 93, 161
Lsp1109I	GCAGC	1 cut(s)	70
MalI	GATC	2 cut(s)	14, 57
MboI	GATC	2 cut(s)	12, 55
MboII	GAAGA	2 cut(s)	16, 29
MflI	RGATCY	1 cut(s)	12
MnlI	CCTC	2 cut(s)	157, 208
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	111
NdeII	GATC	2 cut(s)	12, 55
NlaIII	CATG	2 cut(s)	12, 76
PdmI	GAANNNNTTC	1 cut(s)	135
PkrI	GCNGC	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	79
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	12
PvuII	CAGCTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	2 cut(s)	12, 55
SetI	ASST	3 cut(s)	85, 197, 229
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
SsiI	CCGC	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	3 cut(s)	17, 29, 89
XmnI	GAANNNNTTC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.