Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014244

Physical Location & Seq

Genomic Coordinates Forward (+)

16646777 .. 16647723

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g22520.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGGGGGATTGGTTTGCTCGCGTCGGATTTGGTAATCTCGTTCATGTGGGTATGGTCGGGCGTCCTGATTAAGATCTACGTGTTTAGCTTTCTGGGGTTTGGCCACGGACCCAGCGGGGAGATTATCAAGTGCGCCCTTTCGATTTTGAACATGTTTTTCTTTGCGTTGCTGGGTAAGGTGACCAACGGTGGCACCTACAATCCTTTGACCGTGTTGACCGGCGCGTTTACCGGGGGTTTCAGGCGCTTTCTTTTCACTATTGCTGCCAGAATCCCTGCTCAGGTTATTGGCTCTATTGCTGGGGTTAGGTTCTTAATTGCGACCTTTCCCGAAATAGGTCTGGGGCCTCGTTTGAACGTTGACATCCATCGAGGTGCTCTTACAGAAGGATTGCTGACGTTTGCGATTGTTACTATCTCGCTTGGACTCGCCAGAAAAATCCCTGGGAGTTTCTTCAGGAAGACGTGGATTTCCAGTGTTTCTAAGTTAACTCTTCATATTCTTGGCTCTGATCTGACTGGTGGTTGCATGAGCCCAGCCTCTGTGATGGGATGGGCTTATGCTCGCGGCGACCATATTACCAAGGAGCATATCATGGTTTACTGGCTTGCCCCGATAGAGGCCACTCTGCTGGCAATATGGACATTTAGGGTTGTCGTTCCACCAGTCCAAGAGGAGAAGGTAGAAAACAAGGCTAAATCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

237

Amino Acids

25.58

Weight (kDa)

9.65

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56950 AT3G56950
fragaria_vesca	FvH4_1g24870
malus_domestica	MD02G1144000.v1.1 MD15G1257400.v1.1
prunus_persica	Prupe.7G020600_v2.0.a1
pyrus_communis	pycom02g11390 pycom15g22520
rosa_chinensis	RchiOBHm_Chr2g0122531
rosa_laevigata	RLG00000018682
rosa_roxburghii	Rroxscaffold_2G00121500
rosa_rugosa	Rorug02G0239300
rosa_samantha	Rh2AG298000 Rh2BG306700 Rh2CG284800 Rh2DG321600
rosa_wichuraiana	Rw2G023690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccII	CGCG	3 cut(s)	23, 227, 570
AciI	CCGC	2 cut(s)	117, 570
AclI	AACGTT	1 cut(s)	360
AcoI	YGGCCR	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	442
AcyI	GRCGYC	1 cut(s)	63
AfiI	CCNNNNNNNGG	3 cut(s)	283, 338, 622
AflIII	ACRYGT	2 cut(s)	81, 153
AgsI	TTSAA	2 cut(s)	151, 358
AjiI	CACGTC	1 cut(s)	468
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	1 cut(s)	90
AluI	AGCT	1 cut(s)	90
Alw21I	GWGCWC	1 cut(s)	382
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	3 cut(s)	103, 347, 624
ApeKI	GCWGC	1 cut(s)	266
AspLEI	GCGC	3 cut(s)	137, 227, 249
AspS9I	GGNCC	2 cut(s)	110, 347
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	105
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	3 cut(s)	378, 544, 549
BciT130I	CCWGG	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	235
BfoI	RGCGCY	1 cut(s)	250
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	2 cut(s)	267, 571
BlsI	GCNGC	2 cut(s)	268, 572
Bme1390I	CCNGG	2 cut(s)	235, 447
Bme18I	GGWCC	1 cut(s)	110
BmgBI	CACGTC	1 cut(s)	468
BmgT120I	GGNCC	2 cut(s)	110, 347
BmiI	GGNNCC	3 cut(s)	112, 196, 348
BmrFI	CCNGG	2 cut(s)	235, 447
BpiI	GAAGAC	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	5 cut(s)	106, 234, 445, 446, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	283, 338, 622
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	4 cut(s)	477, 526, 611, 668
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	5 cut(s)	106, 234, 445, 446, 585
BseGI	GGATG	2 cut(s)	366, 560
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	3 cut(s)	283, 338, 622
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	4 cut(s)	477, 526, 611, 668
BseRI	GAGGAG	1 cut(s)	692
BseXI	GCAGC	1 cut(s)	253
BseYI	CCCAGC	4 cut(s)	113, 172, 302, 538
Bsh1236I	CGCG	3 cut(s)	23, 227, 570
BshFI	GGCC	3 cut(s)	105, 349, 626
BshNI	GGYRCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	2 cut(s)	222, 234
BslI	CCNNNNNNNGG	3 cut(s)	283, 338, 622
BsnI	GGCC	3 cut(s)	105, 349, 626
Bsp1286I	GDGCHC	2 cut(s)	382, 539
Bsp143I	GATC	2 cut(s)	75, 514
BspACI	CCGC	2 cut(s)	117, 570
BspANI	GGCC	3 cut(s)	105, 349, 626
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	3 cut(s)	23, 227, 570
BspLI	GGNNCC	3 cut(s)	112, 196, 348
BspT107I	GGYRCC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	4 cut(s)	477, 526, 611, 668
BssAI	RCCGGY	1 cut(s)	221
BssECI	CCNNGG	5 cut(s)	106, 234, 445, 446, 585
BssMI	GATC	2 cut(s)	75, 514
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	191, 214
Bst6I	CTCTTC	1 cut(s)	501
BstACI	GRCGYC	1 cut(s)	63
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	4 cut(s)	21, 568, 612, 636
BstDEI	CTNAG	2 cut(s)	282, 486
BstDSI	CCRYGG	1 cut(s)	106
BstEII	GGTNACC	1 cut(s)	181
BstF5I	GGATG	2 cut(s)	366, 560
BstFNI	CGCG	3 cut(s)	23, 227, 570
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	3 cut(s)	137, 227, 249
BstKTI	GATC	2 cut(s)	78, 517
BstMBI	GATC	2 cut(s)	75, 514
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	157
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	233, 445
BstUI	CGCG	3 cut(s)	23, 227, 570
BstV1I	GCAGC	1 cut(s)	253
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	3 cut(s)	105, 349, 626
BtgI	CCRYGG	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	366, 560
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	4 cut(s)	21, 568, 612, 636
CaiI	CAGNNNCTG	1 cut(s)	545
CfoI	GCGC	3 cut(s)	137, 227, 249
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	110, 347
CseI	GACGC	2 cut(s)	12, 52
CviAII	CATG	4 cut(s)	46, 154, 532, 598
DdeI	CTNAG	2 cut(s)	282, 486
DpnI	GATC	2 cut(s)	77, 516
DpnII	GATC	2 cut(s)	75, 514
EaeI	YGGCCR	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	539
Eco47I	GGWCC	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	442
Eco91I	GGTNACC	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	347
EcoO65I	GGTNACC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	585
EcoT38I	GRGCYC	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	4 cut(s)	49, 157, 535, 601
FatI	CATG	4 cut(s)	45, 153, 531, 597
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	267, 571
FokI	GGATG	2 cut(s)	353, 567
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	2 cut(s)	267, 571
GlaI	GCGC	3 cut(s)	136, 226, 248
GluI	GCNGC	2 cut(s)	267, 571
GsaI	CCCAGC	4 cut(s)	117, 176, 306, 542
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	3 cut(s)	105, 349, 626
HapII	CCGG	2 cut(s)	222, 234
HgaI	GACGC	2 cut(s)	12, 52
HhaI	GCGC	3 cut(s)	137, 227, 249
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	4 cut(s)	49, 157, 535, 601
Hin6I	GCGC	3 cut(s)	135, 225, 247
HinP1I	GCGC	3 cut(s)	135, 225, 247
HincII	GTYRAC	3 cut(s)	219, 364, 492
HindII	GTYRAC	3 cut(s)	219, 364, 492
HinfI	GANTC	2 cut(s)	273, 429
HpaI	GTTAAC	1 cut(s)	492
HpaII	CCGG	2 cut(s)	222, 234
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	5 cut(s)	219, 231, 364, 492, 604
Hpy188I	TCNGA	4 cut(s)	28, 514, 519, 706
Hpy188III	TCNNGA	3 cut(s)	67, 332, 460
Hpy8I	GTNNAC	5 cut(s)	219, 231, 364, 492, 604
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	383, 676
HpyCH4III	ACNGT	2 cut(s)	191, 214
HpyCH4IV	ACGT	4 cut(s)	81, 360, 401, 467
HpyCH4V	TGCA	1 cut(s)	531
HpyF3I	CTNAG	2 cut(s)	282, 486
HpySE526I	ACGT	4 cut(s)	81, 360, 401, 467
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	49, 157, 535, 601
HspAI	GCGC	3 cut(s)	135, 225, 247
KspAI	GTTAAC	1 cut(s)	492
Kzo9I	GATC	2 cut(s)	75, 514
LmnI	GCTCC	1 cut(s)	589
Lsp1109I	GCAGC	1 cut(s)	253
MaeII	ACGT	4 cut(s)	81, 360, 401, 467
MaeIII	GTNAC	2 cut(s)	181, 412
MalI	GATC	2 cut(s)	77, 516
MboI	GATC	2 cut(s)	75, 514
MboII	GAAGA	3 cut(s)	448, 475, 488
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	2 cut(s)	382, 539
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	1 cut(s)	318
MluNI	TGGCCA	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	5 cut(s)	360, 368, 553, 616, 670
Mox20I	TGGCCA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	3 cut(s)	72, 317, 491
MslI	CAYNNNNRTG	1 cut(s)	375
Msp20I	TGGCCA	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	2 cut(s)	222, 234
MspR9I	CCNGG	2 cut(s)	235, 447
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	3 cut(s)	23, 227, 570
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	2 cut(s)	75, 514
NlaIII	CATG	4 cut(s)	49, 157, 535, 601
NlaIV	GGNNCC	3 cut(s)	112, 196, 348
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	157
PasI	CCCWGGG	1 cut(s)	446
PciI	ACATGT	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	273
PkrI	GCNGC	2 cut(s)	268, 572
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
Ppu21I	YACGTR	1 cut(s)	82
PscI	ACATGT	1 cut(s)	153
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	445
PspEI	GGTNACC	1 cut(s)	181
PspFI	CCCAGC	4 cut(s)	113, 172, 302, 538
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	3 cut(s)	112, 196, 348
PspPI	GGNCC	2 cut(s)	110, 347
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	72, 317, 491
SatI	GCNGC	2 cut(s)	267, 571
Sau3AI	GATC	2 cut(s)	75, 514
Sau96I	GGNCC	2 cut(s)	110, 347
SchI	GAGTC	1 cut(s)	423
ScrFI	CCNGG	2 cut(s)	235, 447
SduI	GDGCHC	2 cut(s)	382, 539
SinI	GGWCC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	375
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	2 cut(s)	117, 570
StyD4I	CCNGG	2 cut(s)	233, 445
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	2 cut(s)	191, 214
TaiI	ACGT	4 cut(s)	84, 363, 404, 470
TaqI	TCGA	2 cut(s)	143, 373
TasI	AATT	1 cut(s)	318
TauI	GCSGC	1 cut(s)	573
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	3 cut(s)	72, 317, 491
Tru9I	TTAA	3 cut(s)	72, 317, 491
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	34, 488
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	1 cut(s)	484
VpaK11BI	GGWCC	1 cut(s)	110
XceI	RCATGY	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.