Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0014244

Physical Location & Seq

Genomic Coordinates Forward (+)

36937611 .. 36943948

Gene Structure 6338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG298000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGACAAAAGGAATATTCCAGCAAGAACATTATACTGTTAAAGACAGAGCGAAGTTTCGTTTAAATTGTCGAATTCCTCAACGACAGACAGGATTACGACTCGAGAGATTGACGACCCAGATTGCGATTGATTCAGAAATGGGGAGGGCTGCTTTGCTCGCATCGGATTTGGTAATCTCATTCATGTGGGTCTTGTCAGGAGTTTTAATCAAGAAATTTATTCACAATGTGTTGGGGTTGGCTCACGAACCTAGTGGTGACATCCTCTACTTCGCCCTCTCAATCATCAACATGTTTTTCTTTGCTTTCTTGGCTAAGATTACCAAGGGTGGCACCTACAATCCTCTCACCGTTTTCTCTGACGCAATCACCGGCGATTTCAGCCGATTCCTTTTCACTGTTGCTGCCAGAATCCCTGCTCAGGTTATTGGCTCTGTTGCTGGGGTCAAGCTCATAATGGAGATCTTTCCTGGAATAGGTCTCGGGCCACGTTTGACTGTTGACATCCATCGAGGGGCCCTTACAGAAGGATTGCTGACATTTGCAATCGTTACTATCTCACTTGGTCTGTACAGAAAAATCCCGGGGAGCTTTTTCATGAAGACATGGATCTCAAGTGTTTCCAAGTTAACTCTTCATATTCTTGGCTCTGATCTGACTGGTGGTTGCATGAACCCAGCTTCTATATCAAAGAACAGGAGGGTGACGGTCAGGAACTGGAACGGCAAGGTTATTGTCGACATTCGCGAGTTCTATGTCAAGGAGGGCAAGCAATTGCCTGGAAAGAAAGGAATCTCACTACCGATGGATCAGTGGAATGTTCTTCGGAGTCATGTGGACGAGATTGACAAGGTTGTTAACGAGACTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

290

Amino Acids

32.2

Weight (kDa)

9.89

Isoelectric Point (pI)

22.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC4	PF02229	228 - 278	7.1e-25	Transcriptional Coactivator p15 (PC4)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56950 AT3G56950
fragaria_vesca	FvH4_1g24870
malus_domestica	MD02G1144000.v1.1 MD15G1257400.v1.1
prunus_persica	Prupe.7G020600_v2.0.a1
pyrus_communis	pycom02g11390 pycom15g22520
rosa_chinensis	RchiOBHm_Chr2g0122531
rosa_laevigata	RLG00000018682
rosa_roxburghii	Rroxscaffold_2G00121500
rosa_rugosa	Rorug02G0239300
rosa_samantha	Rh2AG298000 Rh2BG306700 Rh2CG284800 Rh2DG321600
rosa_wichuraiana	Rw2G023690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	738
AccII	CGCG	1 cut(s)	747
AclWI	GGATC	2 cut(s)	617, 816
AcsI	RAATTY	2 cut(s)	72, 215
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	3 cut(s)	421, 476, 514
AflIII	ACRYGT	1 cut(s)	291
AjnI	CCWGG	2 cut(s)	469, 778
AluBI	AGCT	3 cut(s)	451, 591, 680
AluI	AGCT	3 cut(s)	451, 591, 680
Alw26I	GTCTC	2 cut(s)	485, 857
AlwI	GGATC	2 cut(s)	617, 816
AlwNI	CAGNNNCTG	1 cut(s)	717
Ama87I	CYCGRG	3 cut(s)	101, 482, 583
AoxI	GGCC	2 cut(s)	485, 516
ApaI	GGGCCC	1 cut(s)	520
ApeKI	GCWGC	2 cut(s)	149, 404
ApoI	RAATTY	2 cut(s)	72, 215
AspS9I	GGNCC	3 cut(s)	485, 516, 517
AsuC2I	CCSGG	2 cut(s)	584, 585
AsuHPI	GGTGA	4 cut(s)	269, 340, 361, 715
AvaI	CYCGRG	3 cut(s)	101, 482, 583
BaeGI	GKGCMC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	520
BbsI	GAAGAC	1 cut(s)	608
BbvI	GCAGC	2 cut(s)	136, 391
BccI	CCATC	2 cut(s)	516, 799
BceAI	ACGGC	1 cut(s)	739
BciT130I	CCWGG	2 cut(s)	471, 780
BcnI	CCSGG	2 cut(s)	584, 585
BcoDI	GTCTC	2 cut(s)	485, 857
BfaI	CTAG	1 cut(s)	252
BglII	AGATCT	1 cut(s)	462
BisI	GCNGC	2 cut(s)	150, 405
BlsI	GCNGC	2 cut(s)	151, 406
Bme1390I	CCNGG	4 cut(s)	471, 584, 585, 780
BmeT110I	CYCGRG	3 cut(s)	101, 482, 583
BmgT120I	GGNCC	3 cut(s)	485, 516, 517
BmiI	GGNNCC	3 cut(s)	334, 517, 518
BmrFI	CCNGG	4 cut(s)	471, 584, 585, 780
BmsI	GCATC	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	608
Bpu10I	CCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	598
BpuMI	CCSGG	2 cut(s)	584, 585
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	3 cut(s)	324, 583, 584
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 476, 514
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	3 cut(s)	664, 722, 871
BseBI	CCWGG	2 cut(s)	471, 780
BseDI	CCNNGG	3 cut(s)	324, 583, 584
BseGI	GGATG	2 cut(s)	261, 504
BseLI	CCNNNNNNNGG	3 cut(s)	421, 476, 514
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	3 cut(s)	664, 722, 871
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	2 cut(s)	136, 391
BseYI	CCCAGC	2 cut(s)	440, 676
Bsh1236I	CGCG	1 cut(s)	747
BshFI	GGCC	2 cut(s)	487, 518
BshNI	GGYRCC	1 cut(s)	332
BsiHKCI	CYCGRG	3 cut(s)	101, 482, 583
BsiSI	CCGG	2 cut(s)	372, 584
BslI	CCNNNNNNNGG	3 cut(s)	421, 476, 514
BsmAI	GTCTC	2 cut(s)	485, 857
BsnI	GGCC	2 cut(s)	487, 518
Bso31I	GGTCTC	1 cut(s)	485
BsoBI	CYCGRG	3 cut(s)	101, 482, 583
Bsp120I	GGGCCC	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	4 cut(s)	462, 609, 652, 808
Bsp68I	TCGCGA	1 cut(s)	747
BspANI	GGCC	2 cut(s)	487, 518
BspCNI	CTCAG	1 cut(s)	433
BspFNI	CGCG	1 cut(s)	747
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	3 cut(s)	334, 517, 518
BspPI	GGATC	2 cut(s)	617, 816
BspT107I	GGYRCC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	371
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	3 cut(s)	664, 722, 871
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	324, 583, 584
BssMI	GATC	4 cut(s)	462, 609, 652, 808
BssT1I	CCWWGG	1 cut(s)	324
Bst2UI	CCWGG	2 cut(s)	471, 780
Bst4CI	ACNGT	5 cut(s)	37, 352, 400, 499, 709
Bst6I	CTCTTC	1 cut(s)	639
BstAUI	TGTACA	1 cut(s)	570
BstC8I	GCNNGC	2 cut(s)	159, 770
BstDEI	CTNAG	2 cut(s)	315, 420
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	261, 504
BstFNI	CGCG	1 cut(s)	747
BstKTI	GATC	4 cut(s)	465, 612, 655, 811
BstMAI	GTCTC	2 cut(s)	485, 857
BstMBI	GATC	4 cut(s)	462, 609, 652, 808
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 311, 381
BstNI	CCWGG	2 cut(s)	471, 780
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	4 cut(s)	469, 582, 583, 778
BstSLI	GKGCMC	1 cut(s)	520
BstUI	CGCG	1 cut(s)	747
BstV1I	GCAGC	2 cut(s)	136, 391
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	2 cut(s)	462, 609
BstYI	RGATCY	2 cut(s)	462, 609
BsuRI	GGCC	2 cut(s)	487, 518
BtsCI	GGATG	2 cut(s)	261, 504
BtsIMutI	CAGTG	2 cut(s)	396, 818
BtuMI	TCGCGA	1 cut(s)	747
Cac8I	GCNNGC	2 cut(s)	159, 770
CaiI	CAGNNNCTG	1 cut(s)	717
CciI	TCATGA	1 cut(s)	597
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	3 cut(s)	485, 516, 517
Cfr9I	CCCGGG	1 cut(s)	583
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	571
CviAII	CATG	6 cut(s)	184, 292, 598, 606, 670, 833
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	2 cut(s)	315, 420
DpnI	GATC	4 cut(s)	464, 611, 654, 810
DpnII	GATC	4 cut(s)	462, 609, 652, 808
DraI	TTTAAA	1 cut(s)	63
DraIII	CACNNNGTG	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	485
Eco88I	CYCGRG	3 cut(s)	101, 482, 583
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoO109I	RGGNCCY	2 cut(s)	516, 517
EcoRI	GAATTC	1 cut(s)	72
EcoRII	CCWGG	2 cut(s)	469, 778
EcoT14I	CCWWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	520
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	6 cut(s)	187, 295, 601, 609, 673, 836
FatI	CATG	6 cut(s)	183, 291, 597, 605, 669, 832
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	2 cut(s)	150, 405
FokI	GGATG	2 cut(s)	248, 491
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	2 cut(s)	150, 405
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	2 cut(s)	150, 405
GsaI	CCCAGC	2 cut(s)	444, 680
HaeIII	GGCC	2 cut(s)	487, 518
HapII	CCGG	2 cut(s)	372, 584
HgaI	GACGC	1 cut(s)	371
Hin1II	CATG	6 cut(s)	187, 295, 601, 609, 673, 836
HincII	GTYRAC	4 cut(s)	502, 630, 739, 859
HindII	GTYRAC	4 cut(s)	502, 630, 739, 859
HinfI	GANTC	6 cut(s)	99, 131, 387, 411, 792, 829
HpaI	GTTAAC	2 cut(s)	630, 859
HpaII	CCGG	2 cut(s)	372, 584
HphI	GGTGA	4 cut(s)	269, 340, 361, 715
Hpy166II	GTNNAC	5 cut(s)	502, 630, 739, 838, 859
Hpy188I	TCNGA	6 cut(s)	136, 166, 361, 652, 657, 828
Hpy188III	TCNNGA	7 cut(s)	103, 198, 211, 245, 598, 712, 746
Hpy8I	GTNNAC	5 cut(s)	502, 630, 739, 838, 859
HpyAV	CCTTC	1 cut(s)	521
HpyCH4III	ACNGT	5 cut(s)	37, 352, 400, 499, 709
HpyCH4IV	ACGT	1 cut(s)	490
HpyCH4V	TGCA	2 cut(s)	545, 669
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 311, 381
HpyF3I	CTNAG	2 cut(s)	315, 420
HpySE526I	ACGT	1 cut(s)	490
Hsp92II	CATG	6 cut(s)	187, 295, 601, 609, 673, 836
KspAI	GTTAAC	2 cut(s)	630, 859
Kzo9I	GATC	4 cut(s)	462, 609, 652, 808
LmnI	GCTCC	1 cut(s)	588
Lsp1109I	GCAGC	2 cut(s)	136, 391
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	490
MaeIII	GTNAC	3 cut(s)	257, 550, 703
MalI	GATC	4 cut(s)	464, 611, 654, 810
MboI	GATC	4 cut(s)	462, 609, 652, 808
MboII	GAAGA	3 cut(s)	613, 626, 815
MfeI	CAATTG	1 cut(s)	773
MflI	RGATCY	2 cut(s)	462, 609
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	4 cut(s)	64, 72, 215, 773
MlyI	GAGTC	2 cut(s)	93, 838
MnlI	CCTC	8 cut(s)	87, 138, 275, 287, 354, 506, 693, 757
MseI	TTAA	5 cut(s)	39, 62, 206, 629, 858
MslI	CAYNNNNRTG	2 cut(s)	184, 290
MspI	CCGG	2 cut(s)	372, 584
MspR9I	CCNGG	4 cut(s)	471, 584, 585, 780
MunI	CAATTG	1 cut(s)	773
MvaI	CCWGG	2 cut(s)	471, 780
MvnI	CGCG	1 cut(s)	747
MwoI	GCNNNNNNNGC	3 cut(s)	158, 311, 381
NciI	CCSGG	2 cut(s)	584, 585
NdeII	GATC	4 cut(s)	462, 609, 652, 808
NlaIII	CATG	6 cut(s)	187, 295, 601, 609, 673, 836
NlaIV	GGNNCC	3 cut(s)	334, 517, 518
NmuCI	GTSAC	2 cut(s)	257, 703
NruI	TCGCGA	1 cut(s)	747
NspI	RCATGY	1 cut(s)	295
PaeR7I	CTCGAG	1 cut(s)	101
PagI	TCATGA	1 cut(s)	597
PciI	ACATGT	1 cut(s)	291
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PfeI	GAWTC	4 cut(s)	131, 387, 411, 792
PfoI	TCCNGGA	1 cut(s)	469
PkrI	GCNGC	2 cut(s)	151, 406
PleI	GAGTC	2 cut(s)	93, 837
PpsI	GAGTC	2 cut(s)	93, 837
PscI	ACATGT	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	469, 778
PspFI	CCCAGC	2 cut(s)	440, 676
PspGI	CCWGG	2 cut(s)	469, 778
PspN4I	GGNNCC	3 cut(s)	334, 517, 518
PspOMI	GGGCCC	1 cut(s)	516
PspPI	GGNCC	3 cut(s)	485, 516, 517
PstNI	CAGNNNCTG	1 cut(s)	717
PsuI	RGATCY	2 cut(s)	462, 609
RruI	TCGCGA	1 cut(s)	747
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
RseI	CAYNNNNRTG	2 cut(s)	184, 290
SalI	GTCGAC	1 cut(s)	737
SaqAI	TTAA	5 cut(s)	39, 62, 206, 629, 858
SatI	GCNGC	2 cut(s)	150, 405
Sau3AI	GATC	4 cut(s)	462, 609, 652, 808
Sau96I	GGNCC	3 cut(s)	485, 516, 517
SchI	GAGTC	2 cut(s)	93, 838
ScrFI	CCNGG	4 cut(s)	471, 584, 585, 780
SduI	GDGCHC	1 cut(s)	520
SfaNI	GCATC	1 cut(s)	170
Sfr274I	CTCGAG	1 cut(s)	101
SgrAI	CRCCGGYG	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	101
SmaI	CCCGGG	1 cut(s)	585
SmiMI	CAYNNNNRTG	2 cut(s)	184, 290
SmlI	CTYRAG	2 cut(s)	101, 613
SmoI	CTYRAG	2 cut(s)	101, 613
Sse9I	AATT	4 cut(s)	64, 72, 215, 773
SspI	AATATT	1 cut(s)	15
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	4 cut(s)	469, 582, 583, 778
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	5 cut(s)	37, 352, 400, 499, 709
TaiI	ACGT	1 cut(s)	493
TaqI	TCGA	4 cut(s)	70, 102, 511, 738
TasI	AATT	4 cut(s)	64, 72, 215, 773
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	4 cut(s)	131, 387, 411, 792
Tru1I	TTAA	5 cut(s)	39, 62, 206, 629, 858
Tru9I	TTAA	5 cut(s)	39, 62, 206, 629, 858
TscAI	CASTG	2 cut(s)	403, 818
TseFI	GTSAC	2 cut(s)	257, 703
TseI	GCWGC	2 cut(s)	149, 404
Tsp45I	GTSAC	2 cut(s)	257, 703
TspDTI	ATGAA	5 cut(s)	172, 586, 614, 626, 686
TspMI	CCCGGG	1 cut(s)	583
TspRI	CASTG	2 cut(s)	403, 818
XagI	CCTNNNNNAGG	1 cut(s)	474
XapI	RAATTY	2 cut(s)	72, 215
XceI	RCATGY	1 cut(s)	295
XhoI	CTCGAG	1 cut(s)	101
XmaI	CCCGGG	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	738
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.