Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014244

Physical Location & Seq

Genomic Coordinates Forward (+)

11954350 .. 11956871

Gene Structure 2522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1144000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGGGAGGATTGGTTTGCTCGTGTCGGATATGATAATCTCGTTCATGTGGGTATGGTCGGGGGTCTTGATCAAGATCTACGTGTTCAGCATTCTGGGGTTTGGTCACGGACCCGGCGGTGAGATCATCAAGTGCGCCCTTTCGATTGTGAACATGTTCTTCTTCGCGTTGCTGGGAAAGGTTACCAACGGCGGCACCTACAATCCTTTGACCGTGTTGTCCGGCGCAATTACTGGGGATTTCAGCCGCTTCCTTTTCACTGTTGGTGCCAGAATCCCTGCTCAGGTTATCGGCTCTATTGCTGGCGTTTGGCTCATAATCGCGGCCTTTCCTGAAGTAGGTCATGGTCCTCGCTTGAACGTTGACCTCCATCGAGGTGCGCTCACAGAAGGGTTGCTGACATTTGCGATTGTTACCGTCTCGCTTGGGCTTGCCAGAAAAATCCCCGGGAGTTTCTTCACGAAGACTTGGATCTCGAGCGTTTCCAAGTTAACTCTTCATATTCTCGGCTCTGATCTGACTGGCGGTTGTATGAACCCGGCTTCTGTGATGGGATGGGCTTACGCTCGTGGCGACCATTTCACGAAGGAGCATATCATGGTTTACTGGCTCGCCCCGATGGAGGCAACTCTGCTGGCAATATGGACATTTAGGGTCGTCGTTCCACCAGCCCAGGAGGACAAGGTCGACGTGAAGGCTAAACCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

237

Amino Acids

25.5

Weight (kDa)

9.17

Isoelectric Point (pI)

15.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	9 - 215	3.3e-06	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014244)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56950 AT3G56950
fragaria_vesca	FvH4_1g24870
malus_domestica	MD02G1144000.v1.1 MD15G1257400.v1.1
prunus_persica	Prupe.7G020600_v2.0.a1
pyrus_communis	pycom02g11390 pycom15g22520
rosa_chinensis	RchiOBHm_Chr2g0122531
rosa_laevigata	RLG00000018682
rosa_roxburghii	Rroxscaffold_2G00121500
rosa_rugosa	Rorug02G0239300
rosa_samantha	Rh2AG298000 Rh2BG306700 Rh2CG284800 Rh2DG321600
rosa_wichuraiana	Rw2G023690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	217
AccB1I	GGYRCC	2 cut(s)	194, 266
AccI	GTMKAC	1 cut(s)	687
AccII	CGCG	2 cut(s)	167, 323
AciI	CCGC	5 cut(s)	117, 192, 247, 323, 525
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	1 cut(s)	479
AcuI	CTGAAG	1 cut(s)	354
AfiI	CCNNNNNNNGG	3 cut(s)	283, 338, 622
AflIII	ACRYGT	2 cut(s)	81, 153
AgsI	TTSAA	1 cut(s)	358
AjiI	CACGTC	1 cut(s)	691
AjnI	CCWGG	1 cut(s)	672
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	479
Ama87I	CYCGRG	2 cut(s)	446, 475
AoxI	GGCC	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	155
AspLEI	GCGC	3 cut(s)	137, 227, 382
AspS9I	GGNCC	2 cut(s)	110, 347
AsuC2I	CCSGG	4 cut(s)	114, 447, 448, 539
AsuHPI	GGTGA	1 cut(s)	131
AvaI	CYCGRG	2 cut(s)	446, 475
AvaII	GGWCC	2 cut(s)	110, 347
BanI	GGYRCC	2 cut(s)	194, 266
BauI	CACGAG	2 cut(s)	20, 567
BbsI	GAAGAC	1 cut(s)	470
BccI	CCATC	4 cut(s)	378, 544, 549, 613
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	674
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	4 cut(s)	114, 447, 448, 539
BcoDI	GTCTC	1 cut(s)	424
BglII	AGATCT	1 cut(s)	75
BisI	GCNGC	3 cut(s)	193, 247, 324
BlsI	GCNGC	3 cut(s)	194, 248, 325
Bme1390I	CCNGG	5 cut(s)	114, 447, 448, 539, 674
Bme18I	GGWCC	2 cut(s)	110, 347
BmeT110I	CYCGRG	2 cut(s)	446, 475
BmgBI	CACGTC	1 cut(s)	691
BmgT120I	GGNCC	2 cut(s)	110, 347
BmiI	GGNNCC	3 cut(s)	112, 196, 268
BmrFI	CCNGG	5 cut(s)	114, 447, 448, 539, 674
BmrI	ACTGGG	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	470
BplI	GAGNNNNNCTC	2 cut(s)	366, 398
Bpu10I	CCTNAGC	1 cut(s)	282
BpuMI	CCSGG	4 cut(s)	114, 447, 448, 539
BsaAI	YACGTR	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	445, 446, 672
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	3 cut(s)	283, 338, 622
Bse1I	ACTGG	3 cut(s)	238, 526, 611
Bse8I	GATNNNNATC	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	674
BseDI	CCNNGG	3 cut(s)	445, 446, 672
BseGI	GGATG	1 cut(s)	560
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	3 cut(s)	283, 338, 622
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	3 cut(s)	238, 526, 611
BseYI	CCCAGC	1 cut(s)	172
Bsh1236I	CGCG	2 cut(s)	167, 323
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	2 cut(s)	194, 266
BsiHKCI	CYCGRG	2 cut(s)	446, 475
BsiSI	CCGG	4 cut(s)	114, 222, 447, 539
BslI	CCNNNNNNNGG	3 cut(s)	283, 338, 622
BsmAI	GTCTC	1 cut(s)	424
BsmBI	CGTCTC	1 cut(s)	424
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	326
BsoBI	CYCGRG	2 cut(s)	446, 475
Bsp143I	GATC	5 cut(s)	69, 75, 123, 471, 514
BspACI	CCGC	5 cut(s)	117, 192, 247, 323, 525
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	295
BspFNI	CGCG	2 cut(s)	167, 323
BspLI	GGNNCC	3 cut(s)	112, 196, 268
BspPI	GGATC	1 cut(s)	479
BspT107I	GGYRCC	2 cut(s)	194, 266
BsrI	ACTGG	3 cut(s)	238, 526, 611
BssECI	CCNNGG	3 cut(s)	445, 446, 672
BssMI	GATC	5 cut(s)	69, 75, 123, 471, 514
BssSI	CACGAG	2 cut(s)	20, 567
Bst2BI	CACGAG	2 cut(s)	20, 567
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	3 cut(s)	214, 262, 418
Bst6I	CTCTTC	1 cut(s)	501
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	4 cut(s)	304, 432, 612, 636
BstDEI	CTNAG	1 cut(s)	282
BstEII	GGTNACC	1 cut(s)	181
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	560
BstFNI	CGCG	2 cut(s)	167, 323
BstHHI	GCGC	3 cut(s)	137, 227, 382
BstKTI	GATC	5 cut(s)	72, 78, 126, 474, 517
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	5 cut(s)	69, 75, 123, 471, 514
BstNI	CCWGG	1 cut(s)	674
BstNSI	RCATGY	1 cut(s)	157
BstPI	GGTNACC	1 cut(s)	181
BstSCI	CCNGG	5 cut(s)	112, 445, 446, 537, 672
BstUI	CGCG	2 cut(s)	167, 323
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	2 cut(s)	75, 471
BstYI	RGATCY	2 cut(s)	75, 471
BsuRI	GGCC	1 cut(s)	326
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	1 cut(s)	560
BtsIMutI	CAGTG	1 cut(s)	258
Cac8I	GCNNGC	4 cut(s)	304, 432, 612, 636
CfoI	GCGC	3 cut(s)	137, 227, 382
Cfr13I	GGNCC	2 cut(s)	110, 347
Cfr9I	CCCGGG	1 cut(s)	446
CviAII	CATG	4 cut(s)	46, 154, 344, 598
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	5 cut(s)	71, 77, 125, 473, 516
DpnII	GATC	5 cut(s)	69, 75, 123, 471, 514
DrdI	GACNNNNNNGTC	1 cut(s)	217
DseDI	GACNNNNNNGTC	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco47I	GGWCC	2 cut(s)	110, 347
Eco57I	CTGAAG	1 cut(s)	354
Eco88I	CYCGRG	2 cut(s)	446, 475
Eco91I	GGTNACC	1 cut(s)	181
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoO65I	GGTNACC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	672
Esp3I	CGTCTC	1 cut(s)	424
FaeI	CATG	4 cut(s)	49, 157, 347, 601
FatI	CATG	4 cut(s)	45, 153, 343, 597
FbaI	TGATCA	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	3 cut(s)	193, 247, 324
FokI	GGATG	1 cut(s)	567
Fsp4HI	GCNGC	3 cut(s)	193, 247, 324
GlaI	GCGC	3 cut(s)	136, 226, 381
GluI	GCNGC	3 cut(s)	193, 247, 324
GsaI	CCCAGC	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	4 cut(s)	114, 222, 447, 539
HhaI	GCGC	3 cut(s)	137, 227, 382
Hin1II	CATG	4 cut(s)	49, 157, 347, 601
Hin6I	GCGC	3 cut(s)	135, 225, 380
HinP1I	GCGC	3 cut(s)	135, 225, 380
HincII	GTYRAC	3 cut(s)	364, 492, 688
HindII	GTYRAC	3 cut(s)	364, 492, 688
HinfI	GANTC	1 cut(s)	273
HpaI	GTTAAC	1 cut(s)	492
HpaII	CCGG	4 cut(s)	114, 222, 447, 539
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	5 cut(s)	151, 364, 492, 604, 688
Hpy188I	TCNGA	3 cut(s)	28, 514, 519
Hpy188III	TCNNGA	6 cut(s)	67, 73, 332, 460, 475, 583
Hpy8I	GTNNAC	5 cut(s)	151, 364, 492, 604, 688
Hpy99I	CGWCG	2 cut(s)	662, 692
HpyAV	CCTTC	3 cut(s)	383, 580, 688
HpyCH4III	ACNGT	3 cut(s)	214, 262, 418
HpyCH4IV	ACGT	3 cut(s)	81, 360, 690
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	3 cut(s)	81, 360, 690
Hsp92II	CATG	4 cut(s)	49, 157, 347, 601
HspAI	GCGC	3 cut(s)	135, 225, 380
Ksp22I	TGATCA	1 cut(s)	69
KspAI	GTTAAC	1 cut(s)	492
Kzo9I	GATC	5 cut(s)	69, 75, 123, 471, 514
LmnI	GCTCC	1 cut(s)	589
MaeII	ACGT	3 cut(s)	81, 360, 690
MaeIII	GTNAC	3 cut(s)	104, 181, 412
MalI	GATC	5 cut(s)	71, 77, 125, 473, 516
MboI	GATC	5 cut(s)	69, 75, 123, 471, 514
MboII	GAAGA	5 cut(s)	151, 154, 448, 475, 488
MflI	RGATCY	2 cut(s)	75, 471
MluCI	AATT	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	5 cut(s)	360, 368, 377, 616, 670
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	491
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	4 cut(s)	114, 222, 447, 539
MspR9I	CCNGG	5 cut(s)	114, 447, 448, 539, 674
Mva1269I	GAATGC	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	674
MvnI	CGCG	2 cut(s)	167, 323
NciI	CCSGG	4 cut(s)	114, 447, 448, 539
NdeII	GATC	5 cut(s)	69, 75, 123, 471, 514
NlaIII	CATG	4 cut(s)	49, 157, 347, 601
NlaIV	GGNNCC	3 cut(s)	112, 196, 268
NmeAIII	GCCGAG	1 cut(s)	486
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	1 cut(s)	157
PaeR7I	CTCGAG	1 cut(s)	475
PciI	ACATGT	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	570
PctI	GAATGC	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	273
PflFI	GACNNNGTC	1 cut(s)	683
PkrI	GCNGC	3 cut(s)	194, 248, 325
Ppu21I	YACGTR	1 cut(s)	82
PscI	ACATGT	1 cut(s)	153
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	672
PspEI	GGTNACC	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	3 cut(s)	112, 196, 268
PspPI	GGNCC	2 cut(s)	110, 347
PsuI	RGATCY	2 cut(s)	75, 471
PsyI	GACNNNGTC	1 cut(s)	683
RseI	CAYNNNNRTG	1 cut(s)	375
SalI	GTCGAC	1 cut(s)	686
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	3 cut(s)	193, 247, 324
Sau3AI	GATC	5 cut(s)	69, 75, 123, 471, 514
Sau96I	GGNCC	2 cut(s)	110, 347
ScrFI	CCNGG	5 cut(s)	114, 447, 448, 539, 674
Sfr274I	CTCGAG	1 cut(s)	475
SinI	GGWCC	2 cut(s)	110, 347
SlaI	CTCGAG	1 cut(s)	475
SmaI	CCCGGG	1 cut(s)	448
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	5 cut(s)	117, 192, 247, 323, 525
StyD4I	CCNGG	5 cut(s)	112, 445, 446, 537, 672
TaaI	ACNGT	3 cut(s)	214, 262, 418
TaiI	ACGT	3 cut(s)	84, 363, 693
TaqI	TCGA	4 cut(s)	143, 373, 476, 687
TasI	AATT	1 cut(s)	228
TauI	GCSGC	3 cut(s)	195, 249, 326
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	1 cut(s)	265
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	3 cut(s)	34, 488, 548
TspGWI	ACGGA	1 cut(s)	123
TspMI	CCCGGG	1 cut(s)	446
TspRI	CASTG	1 cut(s)	265
Tth111I	GACNNNGTC	1 cut(s)	683
VpaK11BI	GGWCC	2 cut(s)	110, 347
XagI	CCTNNNNNAGG	1 cut(s)	336
XceI	RCATGY	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	475
XmaI	CCCGGG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	687
XmnI	GAANNNNTTC	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.