pycom02g11390

Belongs to the MIP aquaporin (TC 1.A.8) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014244
Physical Location & Seq
Forward (+)
8062871 .. 8064656
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g11390.2

Sequence Viewer

Length: 711 bp
ATGGGAAGGATTGGTTTGCTCGCTTCGGATTTGATAATCTCGTTCATTTGGGTATGGTCGGGGGTTTTGATTAAGATCTACGTGTTCAGCATTCTGGGGTTTGGTCACGGACCCGGCGGTGAGATTATCAAGTGCGCCCTTTCGATTGTGAACATGTTCTTCTTCGCGTTGCTGGGAAAGGTTACCAACGGTGGCACCTACAATCCTTTGACCGTGTTGTCCGGCGCAATTACCGGGGATTTCAGCCGCTTCCTTTTCACTGTTGGTGCCAGAATCCCTGCTCAGGTTATCGGCTCTATTGCTGGCGTTAGGCTCATAATCGCGACCTTTCCTGAAGTAGGTCATGGTCCTCGCTTGAATGTTGACCTCCATCGAGGTGCACTCACAGAAGGGTTGCTGACATTTGCGATTGTTACTGTCTCACTTGGGCTTGCCAGAAAAATCCCGGGGAGTTTCTTCAGGAAGACTTGGATCTCGAGTGTTTCCAAGTTAACTCTTCATATTCTCGGCTCTGATCTGACTGGCGGTTGTATGAACCCGGCTTCTGTGATGGGATGGGCTTATGCTCGTGGCGACCATTTTACAAGGGAGCATGTCATGGTTTACTGGCTCGCCCCGATAGAGGCAACTCTGCTGGCCATATGGACATTTAGGGTCGTCGTTCCACCAGTCCAAGAGGACAAGGTAGACATGAAGGCTAAATCAGAATGA

Protein Analysis

237

Amino Acids

25.53

Weight (kDa)

9.55

Isoelectric Point (pI)

16.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014244)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56950 AT3G56950
fragaria_vesca FvH4_1g24870
malus_domestica MD02G1144000.v1.1 MD15G1257400.v1.1
prunus_persica Prupe.7G020600_v2.0.a1
pyrus_communis pycom02g11390 pycom15g22520
rosa_chinensis RchiOBHm_Chr2g0122531
rosa_laevigata RLG00000018682
rosa_roxburghii Rroxscaffold_2G00121500
rosa_rugosa Rorug02G0239300
rosa_samantha Rh2AG298000 Rh2BG306700 Rh2CG284800 Rh2DG321600
rosa_wichuraiana Rw2G023690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 217
AccB1I GGYRCC 2 cut(s) 194, 266
AccI GTMKAC 1 cut(s) 687
AccII CGCG 2 cut(s) 167, 323
AciI CCGC 3 cut(s) 117, 247, 525
AclWI GGATC 1 cut(s) 479
AcoI YGGCCR 1 cut(s) 636
AcuI CTGAAG 2 cut(s) 354, 442
AfiI CCNNNNNNNGG 3 cut(s) 283, 338, 622
AflIII ACRYGT 2 cut(s) 81, 153
AgsI TTSAA 1 cut(s) 358
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 1 cut(s) 424
Alw44I GTGCAC 1 cut(s) 378
AlwI GGATC 1 cut(s) 479
Ama87I CYCGRG 2 cut(s) 445, 475
AoxI GGCC 1 cut(s) 636
ApaLI GTGCAC 1 cut(s) 378
Asp700I GAANNNNTTC 1 cut(s) 155
AspLEI GCGC 2 cut(s) 137, 227
AspS9I GGNCC 2 cut(s) 110, 347
AsuC2I CCSGG 5 cut(s) 114, 235, 446, 447, 539
AsuHPI GGTGA 1 cut(s) 131
AvaI CYCGRG 2 cut(s) 445, 475
AvaII GGWCC 2 cut(s) 110, 347
BaeGI GKGCMC 1 cut(s) 382
BalI TGGCCA 1 cut(s) 638
BanI GGYRCC 2 cut(s) 194, 266
BauI CACGAG 1 cut(s) 567
BbsI GAAGAC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 382
BccI CCATC 3 cut(s) 378, 544, 549
BcnI CCSGG 5 cut(s) 114, 235, 446, 447, 539
BcoDI GTCTC 1 cut(s) 424
BglII AGATCT 1 cut(s) 75
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
Bme1390I CCNGG 5 cut(s) 114, 235, 446, 447, 539
Bme18I GGWCC 2 cut(s) 110, 347
BmeT110I CYCGRG 2 cut(s) 445, 475
BmgT120I GGNCC 2 cut(s) 110, 347
BmiI GGNNCC 3 cut(s) 112, 196, 268
BmrFI CCNGG 5 cut(s) 114, 235, 446, 447, 539
BpiI GAAGAC 1 cut(s) 470
BplI GAGNNNNNCTC 2 cut(s) 366, 398
Bpu10I CCTNAGC 1 cut(s) 282
BpuMI CCSGG 5 cut(s) 114, 235, 446, 447, 539
BsaAI YACGTR 1 cut(s) 82
BsaBI GATNNNNATC 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 234, 445, 446
Bsc4I CCNNNNNNNGG 3 cut(s) 283, 338, 622
Bse1I ACTGG 3 cut(s) 526, 611, 668
Bse8I GATNNNNATC 1 cut(s) 74
BseDI CCNNGG 3 cut(s) 234, 445, 446
BseGI GGATG 1 cut(s) 560
BseJI GATNNNNATC 1 cut(s) 74
BseLI CCNNNNNNNGG 3 cut(s) 283, 338, 622
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 3 cut(s) 526, 611, 668
BseSI GKGCMC 1 cut(s) 382
BseYI CCCAGC 1 cut(s) 172
Bsh1236I CGCG 2 cut(s) 167, 323
BshFI GGCC 1 cut(s) 638
BshNI GGYRCC 2 cut(s) 194, 266
BsiHKAI GWGCWC 1 cut(s) 382
BsiHKCI CYCGRG 2 cut(s) 445, 475
BsiSI CCGG 5 cut(s) 114, 222, 234, 446, 539
BslI CCNNNNNNNGG 3 cut(s) 283, 338, 622
BsmAI GTCTC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 90
BsnI GGCC 1 cut(s) 638
BsoBI CYCGRG 2 cut(s) 445, 475
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 3 cut(s) 75, 471, 514
Bsp68I TCGCGA 1 cut(s) 323
BspACI CCGC 3 cut(s) 117, 247, 525
BspANI GGCC 1 cut(s) 638
BspCNI CTCAG 1 cut(s) 295
BspFNI CGCG 2 cut(s) 167, 323
BspLI GGNNCC 3 cut(s) 112, 196, 268
BspPI GGATC 1 cut(s) 479
BspT107I GGYRCC 2 cut(s) 194, 266
BsrI ACTGG 3 cut(s) 526, 611, 668
BssECI CCNNGG 3 cut(s) 234, 445, 446
BssMI GATC 3 cut(s) 75, 471, 514
BssSI CACGAG 1 cut(s) 567
Bst2BI CACGAG 1 cut(s) 567
Bst4CI ACNGT 4 cut(s) 191, 214, 262, 418
Bst6I CTCTTC 1 cut(s) 501
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 5 cut(s) 21, 304, 432, 612, 636
BstDEI CTNAG 1 cut(s) 282
BstEII GGTNACC 1 cut(s) 181
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 1 cut(s) 560
BstFNI CGCG 2 cut(s) 167, 323
BstHHI GCGC 2 cut(s) 137, 227
BstKTI GATC 3 cut(s) 78, 474, 517
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 3 cut(s) 75, 471, 514
BstNSI RCATGY 2 cut(s) 157, 596
BstPI GGTNACC 1 cut(s) 181
BstSCI CCNGG 5 cut(s) 112, 233, 444, 445, 537
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 2 cut(s) 167, 323
BstV2I GAAGAC 1 cut(s) 470
BstX2I RGATCY 2 cut(s) 75, 471
BstYI RGATCY 2 cut(s) 75, 471
BsuRI GGCC 1 cut(s) 638
BtsCI GGATG 1 cut(s) 560
BtsIMutI CAGTG 1 cut(s) 258
BtuMI TCGCGA 1 cut(s) 323
Cac8I GCNNGC 5 cut(s) 21, 304, 432, 612, 636
CfoI GCGC 2 cut(s) 137, 227
Cfr13I GGNCC 2 cut(s) 110, 347
Cfr9I CCCGGG 1 cut(s) 445
CviAII CATG 5 cut(s) 154, 344, 593, 598, 691
DdeI CTNAG 1 cut(s) 282
DpnI GATC 3 cut(s) 77, 473, 516
DpnII GATC 3 cut(s) 75, 471, 514
DrdI GACNNNNNNGTC 1 cut(s) 217
DseDI GACNNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 636
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco47I GGWCC 2 cut(s) 110, 347
Eco57I CTGAAG 2 cut(s) 354, 442
Eco88I CYCGRG 2 cut(s) 445, 475
Eco91I GGTNACC 1 cut(s) 181
EcoNI CCTNNNNNAGG 1 cut(s) 336
EcoO65I GGTNACC 1 cut(s) 181
FaeI CATG 5 cut(s) 157, 347, 596, 601, 694
FatI CATG 5 cut(s) 153, 343, 592, 597, 690
FauNDI CATATG 1 cut(s) 641
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 1 cut(s) 247
FokI GGATG 1 cut(s) 567
Fsp4HI GCNGC 1 cut(s) 247
GlaI GCGC 2 cut(s) 136, 226
GluI GCNGC 1 cut(s) 247
GsaI CCCAGC 1 cut(s) 176
HaeIII GGCC 1 cut(s) 638
HapII CCGG 5 cut(s) 114, 222, 234, 446, 539
HhaI GCGC 2 cut(s) 137, 227
Hin1II CATG 5 cut(s) 157, 347, 596, 601, 694
Hin6I GCGC 2 cut(s) 135, 225
HinP1I GCGC 2 cut(s) 135, 225
HincII GTYRAC 2 cut(s) 364, 492
HindII GTYRAC 2 cut(s) 364, 492
HinfI GANTC 1 cut(s) 273
HpaI GTTAAC 1 cut(s) 492
HpaII CCGG 5 cut(s) 114, 222, 234, 446, 539
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 6 cut(s) 151, 364, 380, 492, 604, 688
Hpy188I TCNGA 4 cut(s) 28, 514, 519, 706
Hpy188III TCNNGA 4 cut(s) 322, 332, 460, 475
Hpy8I GTNNAC 6 cut(s) 151, 364, 380, 492, 604, 688
Hpy99I CGWCG 1 cut(s) 662
HpyAV CCTTC 2 cut(s) 383, 688
HpyCH4III ACNGT 4 cut(s) 191, 214, 262, 418
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 380
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 5 cut(s) 157, 347, 596, 601, 694
HspAI GCGC 2 cut(s) 135, 225
KspAI GTTAAC 1 cut(s) 492
Kzo9I GATC 3 cut(s) 75, 471, 514
LmnI GCTCC 1 cut(s) 589
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 3 cut(s) 104, 181, 412
MalI GATC 3 cut(s) 77, 473, 516
MboI GATC 3 cut(s) 75, 471, 514
MboII GAAGA 5 cut(s) 151, 154, 448, 475, 488
MflI RGATCY 2 cut(s) 75, 471
MhlI GDGCHC 1 cut(s) 382
MlsI TGGCCA 1 cut(s) 638
MluCI AATT 1 cut(s) 228
MluNI TGGCCA 1 cut(s) 638
MnlI CCTC 5 cut(s) 360, 368, 377, 616, 670
Mox20I TGGCCA 1 cut(s) 638
MroXI GAANNNNTTC 1 cut(s) 155
MscI TGGCCA 1 cut(s) 638
MseI TTAA 2 cut(s) 72, 491
MslI CAYNNNNRTG 1 cut(s) 375
Msp20I TGGCCA 1 cut(s) 638
MspI CCGG 5 cut(s) 114, 222, 234, 446, 539
MspR9I CCNGG 5 cut(s) 114, 235, 446, 447, 539
Mva1269I GAATGC 1 cut(s) 90
MvnI CGCG 2 cut(s) 167, 323
NciI CCSGG 5 cut(s) 114, 235, 446, 447, 539
NdeI CATATG 1 cut(s) 641
NdeII GATC 3 cut(s) 75, 471, 514
NlaIII CATG 5 cut(s) 157, 347, 596, 601, 694
NlaIV GGNNCC 3 cut(s) 112, 196, 268
NmeAIII GCCGAG 1 cut(s) 486
NmuCI GTSAC 1 cut(s) 104
NruI TCGCGA 1 cut(s) 323
NspI RCATGY 2 cut(s) 157, 596
PaeR7I CTCGAG 1 cut(s) 475
PciI ACATGT 1 cut(s) 153
PctI GAATGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 273
PkrI GCNGC 1 cut(s) 248
Ppu21I YACGTR 1 cut(s) 82
PscI ACATGT 1 cut(s) 153
PspEI GGTNACC 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 172
PspN4I GGNNCC 3 cut(s) 112, 196, 268
PspPI GGNCC 2 cut(s) 110, 347
PsuI RGATCY 2 cut(s) 75, 471
RruI TCGCGA 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 2 cut(s) 72, 491
SatI GCNGC 1 cut(s) 247
Sau3AI GATC 3 cut(s) 75, 471, 514
Sau96I GGNCC 2 cut(s) 110, 347
ScrFI CCNGG 5 cut(s) 114, 235, 446, 447, 539
SduI GDGCHC 1 cut(s) 382
SetI ASST 9 cut(s) 84, 183, 200, 288, 329, 343, 369, 379, 687
Sfr274I CTCGAG 1 cut(s) 475
SinI GGWCC 2 cut(s) 110, 347
SlaI CTCGAG 1 cut(s) 475
SmaI CCCGGG 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 1 cut(s) 228
SsiI CCGC 3 cut(s) 117, 247, 525
StyD4I CCNGG 5 cut(s) 112, 233, 444, 445, 537
TaaI ACNGT 4 cut(s) 191, 214, 262, 418
TaiI ACGT 1 cut(s) 84
TaqI TCGA 3 cut(s) 143, 373, 476
TasI AATT 1 cut(s) 228
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 2 cut(s) 72, 491
Tru9I TTAA 2 cut(s) 72, 491
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 4 cut(s) 34, 488, 548, 707
TspGWI ACGGA 1 cut(s) 123
TspMI CCCGGG 1 cut(s) 445
TspRI CASTG 1 cut(s) 265
VneI GTGCAC 1 cut(s) 378
VpaK11BI GGWCC 2 cut(s) 110, 347
XagI CCTNNNNNAGG 1 cut(s) 336
XceI RCATGY 2 cut(s) 157, 596
XhoI CTCGAG 1 cut(s) 475
XmaI CCCGGG 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 687
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.