FvH4_1g25260

RING-variant domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0003198
Physical Location & Seq
Forward (+)
17052082 .. 17059182
7101 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25260.t8

Sequence Viewer

Length: 1023 bp
ATGGGAAAGGAAAACTTATCAGAGGCTGGAGGTGGAGTCAGTGAGGAAGGTGCCTCACCTAGACAGAGTGATTATCTAGGGACTCACCCACGCCATAGTCTTGACAAGGAGGCCGGATTGCCCACTTGTCGTGTGTGCCATTGTGCTGAAACTGACAAAAGGGGAGATGCAGCATTAGAGTTCTTGGGTATCACTCCTCCTTTACAAGAAGCACACATAAGCCACCGGGAAGTAAATCCTGACAGCAATGTAGCTCTGAAAGATGCTGAAAGTGATAGTTCTGTCAAGAAAAATGTTGGACAAGAATCTAGGTTTTTGGAGTTTATGGGCCCTGACGGAGAAGTTTTCATTTGTAGTGCTGATCTAGAAATGGGTTCCTGTCAGCATCAAGATACTTTACTGGAGCTTGGTTGCTCTTGCAAAAATGACCTTGCTCTAGTACACTATTCATGTGCACTCAAATGGTTTATTAACCATGGATCCACTGTGTGTGAAATCTGCGGACGTGTTTCAAAGAATATCAGAGTTACAGATTTCAAAAAGGTTCTTGTTTCATTAAAAGAGTATGAATCATTGAGGGAAAGAACTGCTAGTGGACAAACCGATCCGCCACATGCCAATACAAGTACGGGCGTAGATCCAGATGCTGTAGCTGCTATCCGAAGGCAACGGCTGAGTGAGATTTCCTTGTGGTTTAGGCCACATAATAATGGTCACGGTAATAATAATACAAATGGAAATTCTGTTGCAGCTTCACAAGTTGCATCAGAAGATCATCAGAATACTGTGGTTGTCCCTGCTGAAAATCGTGCAACCAAGTGGGCTATGGAAGCTACTGCTATTCTGCTTGCCACAGGGCTGCTTACTGTTACTGTAGCGTGGCTTTTAGCTCCTCATGTGGCGAAGTTTGTGCTTACAAGAATCAAGTATGGACCGGCACGCTACTGGGCAATATTGTTTGTCTTTTGGTTTCTCGTTTTTGGAATTTGGGCTTCACGAACACATGGCGCTCACAAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

341

Amino Acids

37.22

Weight (kDa)

6.31

Isoelectric Point (pI)

31.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 129 - 167 2.1e-06 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 2 cut(s) 501, 608
AclWI GGATC 4 cut(s) 474, 487, 599, 632
AcsI RAATTY 2 cut(s) 739, 984
AdeI CACNNNGTG 1 cut(s) 489
AfaI GTAC 2 cut(s) 441, 628
AflIII ACRYGT 1 cut(s) 505
AgsI TTSAA 2 cut(s) 513, 538
AjiI CACGTC 1 cut(s) 506
AluBI AGCT 6 cut(s) 254, 406, 653, 752, 833, 890
AluI AGCT 6 cut(s) 254, 406, 653, 752, 833, 890
Alw21I GWGCWC 1 cut(s) 457
Alw44I GTGCAC 1 cut(s) 453
AlwI GGATC 4 cut(s) 474, 487, 599, 632
AlwNI CAGNNNCTG 2 cut(s) 26, 647
AoxI GGCC 3 cut(s) 111, 328, 698
ApaI GGGCCC 1 cut(s) 332
ApaLI GTGCAC 1 cut(s) 453
ApeKI GCWGC 4 cut(s) 170, 653, 749, 859
ApoI RAATTY 2 cut(s) 739, 984
AspLEI GCGC 1 cut(s) 1010
AspS9I GGNCC 3 cut(s) 328, 329, 932
AsuC2I CCSGG 1 cut(s) 227
AsuHPI GGTGA 2 cut(s) 48, 77
AvaII GGWCC 1 cut(s) 932
BaeGI GKGCMC 2 cut(s) 332, 457
BamHI GGATCC 1 cut(s) 479
BanI GGYRCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 4 cut(s) 182, 640, 761, 846
BceAI ACGGC 1 cut(s) 686
BcgI CGANNNNNNTGC 2 cut(s) 892, 926
BcnI CCSGG 1 cut(s) 227
BfaI CTAG 6 cut(s) 60, 77, 309, 365, 437, 591
BfmI CTRYAG 2 cut(s) 648, 873
BfoI RGCGCY 1 cut(s) 1011
BisI GCNGC 4 cut(s) 171, 654, 750, 860
BlsI GCNGC 4 cut(s) 172, 655, 751, 861
Bme1390I CCNGG 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 932
BmgBI CACGTC 1 cut(s) 506
BmgT120I GGNCC 3 cut(s) 328, 329, 932
BmiI GGNNCC 4 cut(s) 52, 330, 376, 481
BmrFI CCNGG 1 cut(s) 227
BmrI ACTGGG 1 cut(s) 955
BmsI GCATC 5 cut(s) 157, 253, 394, 634, 773
BmuI ACTGGG 1 cut(s) 955
BpmI CTGGAG 2 cut(s) 48, 422
BpuMI CCSGG 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 475
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bse118I RCCGGY 1 cut(s) 934
Bse1I ACTGG 2 cut(s) 405, 950
Bse3DI GCAATG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 475
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 665
BseNI ACTGG 2 cut(s) 405, 950
BseRI GAGGAG 2 cut(s) 186, 882
BseSI GKGCMC 2 cut(s) 332, 457
BseXI GCAGC 4 cut(s) 182, 640, 761, 846
BshFI GGCC 3 cut(s) 113, 330, 700
BshNI GGYRCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 457
BsiSI CCGG 3 cut(s) 114, 226, 935
BslFI GGGAC 2 cut(s) 94, 779
BsmFI GGGAC 2 cut(s) 94, 779
BsnI GGCC 3 cut(s) 113, 330, 700
Bsp120I GGGCCC 1 cut(s) 328
Bsp1286I GDGCHC 2 cut(s) 332, 457
Bsp143I GATC 5 cut(s) 361, 479, 604, 637, 772
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 2 cut(s) 501, 608
BspANI GGCC 3 cut(s) 113, 330, 700
BspCNI CTCAG 1 cut(s) 666
BspLI GGNNCC 4 cut(s) 52, 330, 376, 481
BspPI GGATC 4 cut(s) 474, 487, 599, 632
BspT107I GGYRCC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 253
BsrFI RCCGGY 1 cut(s) 934
BsrI ACTGG 2 cut(s) 405, 950
BssAI RCCGGY 1 cut(s) 934
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 5 cut(s) 361, 479, 604, 637, 772
BssT1I CCWWGG 1 cut(s) 475
Bst4CI ACNGT 5 cut(s) 487, 719, 787, 868, 874
BstC8I GCNNGC 2 cut(s) 849, 940
BstDEI CTNAG 1 cut(s) 674
BstDSI CCRYGG 1 cut(s) 475
BstH2I RGCGCY 1 cut(s) 1011
BstHHI GCGC 1 cut(s) 1010
BstKTI GATC 5 cut(s) 364, 482, 607, 640, 775
BstMBI GATC 5 cut(s) 361, 479, 604, 637, 772
BstMWI GCNNNNNNNGC 2 cut(s) 653, 830
BstNSI RCATGY 1 cut(s) 617
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 2 cut(s) 648, 873
BstSLI GKGCMC 2 cut(s) 332, 457
BstV1I GCAGC 4 cut(s) 182, 640, 761, 846
BstX2I RGATCY 2 cut(s) 479, 637
BstYI RGATCY 2 cut(s) 479, 637
BsuRI GGCC 3 cut(s) 113, 330, 700
BtgI CCRYGG 1 cut(s) 475
BtrI CACGTC 1 cut(s) 506
BtsIMutI CAGTG 2 cut(s) 46, 483
Cac8I GCNNGC 2 cut(s) 849, 940
CaiI CAGNNNCTG 2 cut(s) 26, 647
CfoI GCGC 1 cut(s) 1010
Cfr10I RCCGGY 1 cut(s) 934
Cfr13I GGNCC 3 cut(s) 328, 329, 932
Csp6I GTAC 2 cut(s) 440, 627
CviAII CATG 5 cut(s) 450, 476, 614, 896, 1004
CviQI GTAC 2 cut(s) 440, 627
DdeI CTNAG 1 cut(s) 674
DpnI GATC 5 cut(s) 363, 481, 606, 639, 774
DpnII GATC 5 cut(s) 361, 479, 604, 637, 772
DraIII CACNNNGTG 1 cut(s) 489
EciI GGCGGA 1 cut(s) 597
Eco130I CCWWGG 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 332
Eco47I GGWCC 1 cut(s) 932
EcoO109I RGGNCCY 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 475
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 1 cut(s) 475
FaeI CATG 5 cut(s) 453, 479, 617, 899, 1007
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 2 cut(s) 94, 779
FatI CATG 5 cut(s) 449, 475, 613, 895, 1003
Fnu4HI GCNGC 4 cut(s) 171, 654, 750, 860
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 4 cut(s) 171, 654, 750, 860
FspBI CTAG 6 cut(s) 60, 77, 309, 365, 437, 591
GlaI GCGC 1 cut(s) 1009
GluI GCNGC 4 cut(s) 171, 654, 750, 860
GsuI CTGGAG 2 cut(s) 48, 422
HaeII RGCGCY 1 cut(s) 1011
HaeIII GGCC 3 cut(s) 113, 330, 700
HapII CCGG 3 cut(s) 114, 226, 935
HhaI GCGC 1 cut(s) 1010
Hin1II CATG 5 cut(s) 453, 479, 617, 899, 1007
Hin6I GCGC 1 cut(s) 1008
HinP1I GCGC 1 cut(s) 1008
HinfI GANTC 5 cut(s) 36, 82, 305, 569, 921
HpaII CCGG 3 cut(s) 114, 226, 935
HphI GGTGA 2 cut(s) 48, 77
Hpy166II GTNNAC 3 cut(s) 442, 455, 596
Hpy188I TCNGA 6 cut(s) 22, 258, 524, 662, 769, 780
Hpy188III TCNNGA 7 cut(s) 101, 239, 286, 365, 389, 641, 996
Hpy8I GTNNAC 3 cut(s) 442, 455, 596
HpyAV CCTTC 2 cut(s) 41, 657
HpyCH4III ACNGT 5 cut(s) 487, 719, 787, 868, 874
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 6 cut(s) 170, 420, 455, 749, 764, 812
HpyF10VI GCNNNNNNNGC 2 cut(s) 653, 830
HpyF3I CTNAG 1 cut(s) 674
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 5 cut(s) 453, 479, 617, 899, 1007
HspAI GCGC 1 cut(s) 1008
Kzo9I GATC 5 cut(s) 361, 479, 604, 637, 772
LmnI GCTCC 2 cut(s) 403, 895
Lsp1109I GCAGC 4 cut(s) 182, 640, 761, 846
LweI GCATC 5 cut(s) 157, 253, 394, 634, 773
MaeI CTAG 6 cut(s) 60, 77, 309, 365, 437, 591
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 3 cut(s) 526, 713, 868
MalI GATC 5 cut(s) 363, 481, 606, 639, 774
MboI GATC 5 cut(s) 361, 479, 604, 637, 772
MboII GAAGA 1 cut(s) 782
MflI RGATCY 2 cut(s) 479, 637
MhlI GDGCHC 2 cut(s) 332, 457
MluCI AATT 2 cut(s) 739, 984
MlyI GAGTC 2 cut(s) 45, 76
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 8 cut(s) 16, 23, 37, 64, 103, 207, 570, 903
MseI TTAA 2 cut(s) 471, 557
MslI CAYNNNNRTG 2 cut(s) 460, 708
MspI CCGG 3 cut(s) 114, 226, 935
MspR9I CCNGG 1 cut(s) 227
MwoI GCNNNNNNNGC 2 cut(s) 653, 830
NciI CCSGG 1 cut(s) 227
NcoI CCATGG 1 cut(s) 475
NdeII GATC 5 cut(s) 361, 479, 604, 637, 772
NlaIII CATG 5 cut(s) 453, 479, 617, 899, 1007
NlaIV GGNNCC 4 cut(s) 52, 330, 376, 481
NmuCI GTSAC 1 cut(s) 713
NspI RCATGY 1 cut(s) 617
PfeI GAWTC 3 cut(s) 305, 569, 921
PkrI GCNGC 4 cut(s) 172, 655, 751, 861
PleI GAGTC 2 cut(s) 44, 76
PpsI GAGTC 2 cut(s) 44, 76
PspN4I GGNNCC 4 cut(s) 52, 330, 376, 481
PspOMI GGGCCC 1 cut(s) 328
PspPI GGNCC 3 cut(s) 328, 329, 932
PstNI CAGNNNCTG 2 cut(s) 26, 647
PsuI RGATCY 2 cut(s) 479, 637
RsaI GTAC 2 cut(s) 441, 628
RsaNI GTAC 2 cut(s) 440, 627
RseI CAYNNNNRTG 2 cut(s) 460, 708
SaqAI TTAA 2 cut(s) 471, 557
SatI GCNGC 4 cut(s) 171, 654, 750, 860
Sau3AI GATC 5 cut(s) 361, 479, 604, 637, 772
Sau96I GGNCC 3 cut(s) 328, 329, 932
SchI GAGTC 2 cut(s) 45, 76
ScrFI CCNGG 1 cut(s) 227
SduI GDGCHC 2 cut(s) 332, 457
SfaNI GCATC 5 cut(s) 157, 253, 394, 634, 773
SfcI CTRYAG 2 cut(s) 648, 873
SinI GGWCC 1 cut(s) 932
SmiMI CAYNNNNRTG 2 cut(s) 460, 708
Sse9I AATT 2 cut(s) 739, 984
SsiI CCGC 2 cut(s) 501, 608
SspI AATATT 1 cut(s) 954
SspMI CTAG 6 cut(s) 60, 77, 309, 365, 437, 591
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 5 cut(s) 487, 719, 787, 868, 874
TaiI ACGT 1 cut(s) 508
TasI AATT 2 cut(s) 739, 984
TatI WGTACW 1 cut(s) 439
TfiI GAWTC 3 cut(s) 305, 569, 921
Tru1I TTAA 2 cut(s) 471, 557
Tru9I TTAA 2 cut(s) 471, 557
TscAI CASTG 2 cut(s) 46, 490
TseFI GTSAC 1 cut(s) 713
TseI GCWGC 4 cut(s) 170, 653, 749, 859
Tsp45I GTSAC 1 cut(s) 713
TspDTI ATGAA 4 cut(s) 337, 438, 543, 582
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 2 cut(s) 46, 490
VneI GTGCAC 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 932
XapI RAATTY 2 cut(s) 739, 984
XbaI TCTAGA 1 cut(s) 364
XceI RCATGY 1 cut(s) 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 823
XspI CTAG 6 cut(s) 60, 77, 309, 365, 437, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.