Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005810.1

Orthogroup ID

OG0003198

Physical Location & Seq

Genomic Coordinates Forward (+)

24215 .. 27592

Gene Structure 3378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005810.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atgggcaaggaaaatttatcagaagctgaggttggagtcagtgaggaaggtggctcacctagacagagtaattgtctagggactctcccacgccatagtcttgacaaggatgccggactgccaacttgtcgtgtgtgccattgcgctgaatctgacaaaaggggagatgcagcattagagttcttgggcatcactcctcctttacaagaagcatgcataagccacagggaagtaaatcctgacagcaatatagccctgaaagatgctgaaagtcatagttctgtcaagaaaaatgttggaaatgaacctaggtttttggagtttataggccctgatggagaagttttcatttgtagtgctgatttagaaatgggttcatgtcagcatcaagacactttactggagcttggttgctcttgcaaaaatgacctagctctagtacactattcatgcgcactcaaatggtttatcaaccatggatccactgtctgtgaaatctgtggacgtgtttcgaagaatatcagagctacagatttcaaaaaggttcttctttcattgaaagagtatgaatcattaagggaaagaactgctagtgggcaaactgatccgccacatgccaatacaagtataggcgtagatccggatgctgtagctgctattcgaaggcaacggctgagtgagatttccctgtggttcagtccacataataatggtaatggtaacaataatacaaatggcaattctgttgcactttcacaagttgcatcagaagaacctcagaatactgcggttgtccctgctgaaaatgttgcaaccaaatgggctatggaagctactgctattctgcttgccacagggctgcttaccgtcactgtagtgtggcttttagctcctcatgttgggaagaaaactgccaaaagtggtcttcatattctcctgggaggaatttgtgctttaacagttgtggttttctttcgatttttttcttcaagtgttgatgctgcaaaagcaccaaatccatcatctagtgctagtcttcacccccttgaaagtagacatccccgcatggccgagcatatcaccacctatacaatggctctgtctcccttcaaggattggtccaatgcttgttgcttctcaaactctatctcagtagcagatcttgtttttccatactgtccattcctccccttactatgcccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

401

Amino Acids

43.21

Weight (kDa)

5.87

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750
fragaria_vesca	FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260
malus_domestica	MD15G1137500.v1.1
prunus_persica	Prupe.4G280400_v2.0.a1 Prupe.4G280400_v2.0.a1 Prupe.4G280400_v2.0.a1
pyrus_communis	pycom15g12390
rosa_chinensis	RchiOBHm_Chr2g0123181
rosa_laevigata	RLG00000018736
rosa_multiflora	Rmu_sc0005810.1_g000004
rosa_roxburghii	Rroxscaffold_2G00120850
rosa_rugosa	Rorug02G0243800 Rorug02G0243900 Rorug02G0244000 Rorug02G0244100
rosa_samantha	Rh2AG303200 Rh2BG311100 Rh2CG289700 Rh2DG327200
rosa_wichuraiana	Rw2G024150 Rw2G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	454
AccI	GTMKAC	1 cut(s)	1054
AccIII	TCCGGA	1 cut(s)	640
AciI	CCGC	3 cut(s)	608, 788, 1063
AclWI	GGATC	4 cut(s)	474, 487, 599, 632
AcoI	YGGCCR	1 cut(s)	1068
AcsI	RAATTY	2 cut(s)	13, 945
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	899
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	5 cut(s)	538, 559, 990, 1049, 1111
AjiI	CACGTC	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	936
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AleI	CACNNNNGTG	1 cut(s)	875
AluBI	AGCT	7 cut(s)	26, 406, 434, 527, 653, 833, 890
AluI	AGCT	7 cut(s)	26, 406, 434, 527, 653, 833, 890
Alw26I	GTCTC	1 cut(s)	1107
AlwI	GGATC	4 cut(s)	474, 487, 599, 632
AlwNI	CAGNNNCTG	1 cut(s)	26
Aor13HI	TCCGGA	1 cut(s)	640
AoxI	GGCC	2 cut(s)	328, 1068
ApeKI	GCWGC	4 cut(s)	170, 653, 859, 1001
ApoI	RAATTY	2 cut(s)	13, 945
AspA2I	CCTAGG	1 cut(s)	308
AspLEI	GCGC	2 cut(s)	146, 455
AspS9I	GGNCC	2 cut(s)	329, 1119
AsuHPI	GGTGA	3 cut(s)	48, 1031, 1072
AsuII	TTCGAA	2 cut(s)	512, 661
AvaII	GGWCC	1 cut(s)	1119
AvrII	CCTAGG	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	479
BbsI	GAAGAC	2 cut(s)	917, 1028
BbvCI	CCTCAGC	1 cut(s)	27
BbvI	GCAGC	4 cut(s)	182, 640, 846, 988
BccI	CCATC	2 cut(s)	329, 1027
BceAI	ACGGC	1 cut(s)	686
BciT130I	CCWGG	1 cut(s)	938
BcoDI	GTCTC	1 cut(s)	1107
BfaI	CTAG	8 cut(s)	60, 77, 309, 431, 437, 591, 1026, 1032
BfmI	CTRYAG	3 cut(s)	528, 648, 873
BglII	AGATCT	1 cut(s)	1159
BisI	GCNGC	4 cut(s)	171, 654, 860, 1002
BlnI	CCTAGG	1 cut(s)	308
BlsI	GCNGC	4 cut(s)	172, 655, 861, 1003
Bme1390I	CCNGG	1 cut(s)	938
Bme18I	GGWCC	1 cut(s)	1119
BmgBI	CACGTC	1 cut(s)	506
BmgT120I	GGNCC	2 cut(s)	329, 1119
BmiI	GGNNCC	1 cut(s)	481
BmrFI	CCNGG	1 cut(s)	938
BmsI	GCATC	8 cut(s)	100, 157, 198, 253, 394, 634, 773, 988
BpiI	GAAGAC	2 cut(s)	917, 1028
BpmI	CTGGAG	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu14I	TTCGAA	2 cut(s)	512, 661
BsaJI	CCNNGG	3 cut(s)	308, 475, 937
BsaWI	WCCGGW	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	1 cut(s)	899
Bse1I	ACTGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	139
BseAI	TCCGGA	1 cut(s)	640
BseBI	CCWGG	1 cut(s)	938
BseDI	CCNNGG	3 cut(s)	308, 475, 937
BseGI	GGATG	3 cut(s)	115, 649, 1057
BseLI	CCNNNNNNNGG	1 cut(s)	899
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	4 cut(s)	18, 665, 791, 1164
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	2 cut(s)	186, 882
BseXI	GCAGC	4 cut(s)	182, 640, 846, 988
BshFI	GGCC	2 cut(s)	330, 1070
BsiSI	CCGG	2 cut(s)	114, 641
BslFI	GGGAC	2 cut(s)	94, 779
BslI	CCNNNNNNNGG	1 cut(s)	899
BsmAI	GTCTC	1 cut(s)	1107
BsmFI	GGGAC	2 cut(s)	94, 779
BsnI	GGCC	2 cut(s)	330, 1070
Bsp119I	TTCGAA	2 cut(s)	512, 661
Bsp13I	TCCGGA	1 cut(s)	640
Bsp143I	GATC	4 cut(s)	479, 604, 637, 1159
Bsp19I	CCATGG	1 cut(s)	475
BspACI	CCGC	3 cut(s)	608, 788, 1063
BspANI	GGCC	2 cut(s)	330, 1070
BspCNI	CTCAG	4 cut(s)	19, 666, 790, 1163
BspEI	TCCGGA	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	481
BspPI	GGATC	4 cut(s)	474, 487, 599, 632
BspT104I	TTCGAA	2 cut(s)	512, 661
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	3 cut(s)	308, 475, 937
BssMI	GATC	4 cut(s)	479, 604, 637, 1159
BssT1I	CCWWGG	2 cut(s)	308, 475
Bst2UI	CCWGG	1 cut(s)	938
Bst4CI	ACNGT	5 cut(s)	487, 868, 874, 961, 1178
BstBI	TTCGAA	2 cut(s)	512, 661
BstC8I	GCNNGC	2 cut(s)	214, 849
BstDEI	CTNAG	4 cut(s)	27, 674, 777, 1150
BstDSI	CCRYGG	1 cut(s)	475
BstF5I	GGATG	3 cut(s)	115, 649, 1057
BstHHI	GCGC	2 cut(s)	146, 455
BstKTI	GATC	4 cut(s)	482, 607, 640, 1162
BstMAI	GTCTC	1 cut(s)	1107
BstMBI	GATC	4 cut(s)	479, 604, 637, 1159
BstMWI	GCNNNNNNNGC	3 cut(s)	653, 830, 1007
BstNI	CCWGG	1 cut(s)	938
BstNSI	RCATGY	2 cut(s)	216, 617
BstSCI	CCNGG	1 cut(s)	936
BstSFI	CTRYAG	3 cut(s)	528, 648, 873
BstV1I	GCAGC	4 cut(s)	182, 640, 846, 988
BstV2I	GAAGAC	2 cut(s)	917, 1028
BstX2I	RGATCY	3 cut(s)	479, 637, 1159
BstYI	RGATCY	3 cut(s)	479, 637, 1159
BsuRI	GGCC	2 cut(s)	330, 1070
BtgI	CCRYGG	1 cut(s)	475
BtrI	CACGTC	1 cut(s)	506
BtsCI	GGATG	3 cut(s)	115, 649, 1057
BtsIMutI	CAGTG	3 cut(s)	46, 483, 870
Cac8I	GCNNGC	2 cut(s)	214, 849
CaiI	CAGNNNCTG	1 cut(s)	26
CfoI	GCGC	2 cut(s)	146, 455
Cfr13I	GGNCC	2 cut(s)	329, 1119
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	8 cut(s)	213, 378, 450, 476, 614, 896, 1066, 1203
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	4 cut(s)	27, 674, 777, 1150
DpnI	GATC	4 cut(s)	481, 606, 639, 1161
DpnII	GATC	4 cut(s)	479, 604, 637, 1159
EaeI	YGGCCR	1 cut(s)	1068
EciI	GGCGGA	1 cut(s)	597
Eco130I	CCWWGG	2 cut(s)	308, 475
Eco47I	GGWCC	1 cut(s)	1119
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	936
EcoT14I	CCWWGG	2 cut(s)	308, 475
EcoT22I	ATGCAT	1 cut(s)	218
ErhI	CCWWGG	2 cut(s)	308, 475
FaeI	CATG	8 cut(s)	216, 381, 453, 479, 617, 899, 1069, 1206
FaqI	GGGAC	2 cut(s)	94, 779
FatI	CATG	8 cut(s)	212, 377, 449, 475, 613, 895, 1065, 1202
FauI	CCCGC	1 cut(s)	1070
FblI	GTMKAC	1 cut(s)	1054
Fnu4HI	GCNGC	4 cut(s)	171, 654, 860, 1002
FokI	GGATG	3 cut(s)	122, 656, 1044
Fsp4HI	GCNGC	4 cut(s)	171, 654, 860, 1002
FspAI	RTGCGCAY	1 cut(s)	454
FspBI	CTAG	8 cut(s)	60, 77, 309, 431, 437, 591, 1026, 1032
FspI	TGCGCA	1 cut(s)	454
GlaI	GCGC	2 cut(s)	145, 454
GluI	GCNGC	4 cut(s)	171, 654, 860, 1002
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	330, 1070
HapII	CCGG	2 cut(s)	114, 641
HhaI	GCGC	2 cut(s)	146, 455
Hin1II	CATG	8 cut(s)	216, 381, 453, 479, 617, 899, 1069, 1206
Hin6I	GCGC	2 cut(s)	144, 453
HinP1I	GCGC	2 cut(s)	144, 453
HinfI	GANTC	4 cut(s)	36, 82, 149, 569
HpaII	CCGG	2 cut(s)	114, 641
HphI	GGTGA	3 cut(s)	48, 1031, 1072
Hpy166II	GTNNAC	4 cut(s)	442, 503, 701, 1055
Hpy188I	TCNGA	5 cut(s)	22, 154, 524, 769, 780
Hpy188III	TCNNGA	5 cut(s)	101, 239, 286, 389, 641
Hpy8I	GTNNAC	4 cut(s)	442, 503, 701, 1055
HpyAV	CCTTC	3 cut(s)	41, 657, 1117
HpyCH4III	ACNGT	5 cut(s)	487, 868, 874, 961, 1178
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	7 cut(s)	170, 216, 420, 749, 764, 812, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	653, 830, 1007
HpyF3I	CTNAG	4 cut(s)	27, 674, 777, 1150
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	8 cut(s)	216, 381, 453, 479, 617, 899, 1069, 1206
HspAI	GCGC	2 cut(s)	144, 453
Kpn2I	TCCGGA	1 cut(s)	640
Kzo9I	GATC	4 cut(s)	479, 604, 637, 1159
LmnI	GCTCC	2 cut(s)	403, 895
Lsp1109I	GCAGC	4 cut(s)	182, 640, 846, 988
LweI	GCATC	8 cut(s)	100, 157, 198, 253, 394, 634, 773, 988
MaeI	CTAG	8 cut(s)	60, 77, 309, 431, 437, 591, 1026, 1032
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	2 cut(s)	719, 868
MalI	GATC	4 cut(s)	481, 606, 639, 1161
MboI	GATC	4 cut(s)	479, 604, 637, 1159
MboII	GAAGA	7 cut(s)	526, 539, 782, 916, 917, 978, 1028
MflI	RGATCY	3 cut(s)	479, 637, 1159
MluCI	AATT	4 cut(s)	13, 70, 739, 945
MlyI	GAGTC	2 cut(s)	45, 76
MmeI	TCCRAC	2 cut(s)	13, 277
MnlI	CCTC	7 cut(s)	22, 37, 207, 786, 903, 935, 1196
Mph1103I	ATGCAT	1 cut(s)	218
MroI	TCCGGA	1 cut(s)	640
MseI	TTAA	2 cut(s)	575, 956
MslI	CAYNNNNRTG	3 cut(s)	460, 708, 875
MspI	CCGG	2 cut(s)	114, 641
MspR9I	CCNGG	1 cut(s)	938
MvaI	CCWGG	1 cut(s)	938
MwoI	GCNNNNNNNGC	3 cut(s)	653, 830, 1007
NcoI	CCATGG	1 cut(s)	475
NdeII	GATC	4 cut(s)	479, 604, 637, 1159
NlaIII	CATG	8 cut(s)	216, 381, 453, 479, 617, 899, 1069, 1206
NlaIV	GGNNCC	1 cut(s)	481
NmeAIII	GCCGAG	1 cut(s)	1096
NmuCI	GTSAC	1 cut(s)	868
NsbI	TGCGCA	1 cut(s)	454
NsiI	ATGCAT	1 cut(s)	218
NspI	RCATGY	2 cut(s)	216, 617
NspV	TTCGAA	2 cut(s)	512, 661
OliI	CACNNNNGTG	1 cut(s)	875
PaeI	GCATGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	149, 569
PkrI	GCNGC	4 cut(s)	172, 655, 861, 1003
PleI	GAGTC	2 cut(s)	44, 76
PpsI	GAGTC	2 cut(s)	44, 76
Psp6I	CCWGG	1 cut(s)	936
PspGI	CCWGG	1 cut(s)	936
PspN4I	GGNNCC	1 cut(s)	481
PspPI	GGNCC	2 cut(s)	329, 1119
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	3 cut(s)	479, 637, 1159
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
RseI	CAYNNNNRTG	3 cut(s)	460, 708, 875
SaqAI	TTAA	2 cut(s)	575, 956
SatI	GCNGC	4 cut(s)	171, 654, 860, 1002
Sau3AI	GATC	4 cut(s)	479, 604, 637, 1159
Sau96I	GGNCC	2 cut(s)	329, 1119
SchI	GAGTC	2 cut(s)	45, 76
ScrFI	CCNGG	1 cut(s)	938
SfaNI	GCATC	8 cut(s)	100, 157, 198, 253, 394, 634, 773, 988
SfcI	CTRYAG	3 cut(s)	528, 648, 873
SfuI	TTCGAA	2 cut(s)	512, 661
SinI	GGWCC	1 cut(s)	1119
SmiMI	CAYNNNNRTG	3 cut(s)	460, 708, 875
SphI	GCATGC	1 cut(s)	216
Sse9I	AATT	4 cut(s)	13, 70, 739, 945
SsiI	CCGC	3 cut(s)	608, 788, 1063
SspMI	CTAG	8 cut(s)	60, 77, 309, 431, 437, 591, 1026, 1032
StyD4I	CCNGG	1 cut(s)	936
StyI	CCWWGG	2 cut(s)	308, 475
TaaI	ACNGT	5 cut(s)	487, 868, 874, 961, 1178
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	3 cut(s)	512, 661, 976
TasI	AATT	4 cut(s)	13, 70, 739, 945
TatI	WGTACW	1 cut(s)	439
TfiI	GAWTC	2 cut(s)	149, 569
Tru1I	TTAA	2 cut(s)	575, 956
Tru9I	TTAA	2 cut(s)	575, 956
TscAI	CASTG	3 cut(s)	46, 490, 877
TseFI	GTSAC	1 cut(s)	868
TseI	GCWGC	4 cut(s)	170, 653, 859, 1001
Tsp45I	GTSAC	1 cut(s)	868
TspDTI	ATGAA	7 cut(s)	318, 337, 366, 438, 543, 582, 917
TspRI	CASTG	3 cut(s)	46, 490, 877
VpaK11BI	GGWCC	1 cut(s)	1119
XapI	RAATTY	2 cut(s)	13, 945
XceI	RCATGY	2 cut(s)	216, 617
XcmI	CCANNNNNNNNNTGG	2 cut(s)	823, 1090
XmaJI	CCTAGG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	1054
XspI	CTAG	8 cut(s)	60, 77, 309, 431, 437, 591, 1026, 1032
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.