RchiOBHm_Chr2g0123181

RING-variant domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003198
Physical Location & Seq
Forward (+)
36324099 .. 36332068
7970 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49550

Sequence Viewer

Length: 1098 bp
ATGGGCAAGGAAAATTTATCAGAAGCTGAGGTTGGAGTCAGTGAGGAAGGTGGCTCACCTAGACAGAGTGATTGTCTAGGGACTCTCCCACGCCATAGTCTTGACAAGGATGCCGGACTGCCAACTTGTCGTGTGTGCCATTGCGCTGAATCTGACAAAAGGGGAGATGCAGCATTAGAGTTCTTGGGCATCACTCCTCCTTTACAAGAAGCATGCATAAGCCACAGGGAAGTAAATCCTGACAGCAATATAGCCCTGAAAGATGCTGAAAGTCATAGTTCTGTCAAGAAAAATGTTGGAAATGAACCTAGGTTTTTGGAGTTTATAGGCCCTGATGGAGAAGTTTTCATTTGTAGTGCTGATTTAGAAATGGGTTCATGTCAGCATCAAGACACTTTACTGGAGCTTGGTTGCTCTTGCAAAAATGACCTTGCTCTAGTACACTATTCATGCGCACTCAAATGGTTTATCAACCATGGATCCACTGTCTGTGAAATCTGTGGACGTGTTTCGAAGAATATCAGAGCTACAGATTTCAAAAAGGTTCTTCTTTCATTGAAAGAGTATGAATCATTAAGGGAAAGAACTGCTAGTGGGCAAACTGATCCGCCACATGCCAATACAAGTATAGGCGTAGATCCGGATGCTGTAGCTGCTATTCGAAGGCAACGGCTGAGTGAGATTTCCCTGTGGTTCAGTCCACATAATAATGGTAACGGTAACAATAATACAAATGGCAATTCTGTTGCACTTTCACAAGTTGCATCAGAAGAACCTCAGAATACTGCGGTTGTCCCTGCTGAAAATGTTGCAACCAAATGGGCTATGGAAGCTACTGCTATTCTGCTTGCCACAGGGCTGCTTACCGTCACTGTAGTGTGGCTTTTAGCTCCTCATGTTGGGAAGAAAACTGCCAAAAGTGGTCTTCATATTCTCCTGGGAGGAATTTGTGCTTTAACAGTTGTGGTTTTCTTTCGATTTTTTGTGCTCACAAGAATCAAGTATGGACCGGCACGTTACTGGGCAATATTGTTTGTCTTTTGGTTTCTCGTATTTGGAATTTGGGCTTCACGCACACATGGCGCGCACAAAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

365

Amino Acids

39.71

Weight (kDa)

6.36

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 129 - 167 2.1e-06 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 454
AccII CGCG 1 cut(s) 1085
AccIII TCCGGA 1 cut(s) 640
AciI CCGC 2 cut(s) 608, 788
AclWI GGATC 4 cut(s) 474, 487, 599, 632
AcsI RAATTY 3 cut(s) 13, 945, 1059
AfaI GTAC 1 cut(s) 441
AfiI CCNNNNNNNGG 1 cut(s) 899
AflIII ACRYGT 1 cut(s) 505
AgsI TTSAA 2 cut(s) 538, 559
AjiI CACGTC 1 cut(s) 506
AjnI CCWGG 1 cut(s) 936
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AleI CACNNNNGTG 1 cut(s) 875
AluBI AGCT 6 cut(s) 26, 406, 527, 653, 833, 890
AluI AGCT 6 cut(s) 26, 406, 527, 653, 833, 890
Alw21I GWGCWC 1 cut(s) 990
AlwI GGATC 4 cut(s) 474, 487, 599, 632
AlwNI CAGNNNCTG 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 640
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 3 cut(s) 170, 653, 859
ApoI RAATTY 3 cut(s) 13, 945, 1059
AspA2I CCTAGG 1 cut(s) 308
AspLEI GCGC 4 cut(s) 146, 455, 1085, 1087
AspS9I GGNCC 2 cut(s) 329, 1007
AsuHPI GGTGA 1 cut(s) 48
AsuII TTCGAA 2 cut(s) 512, 661
AvaII GGWCC 1 cut(s) 1007
AvrII CCTAGG 1 cut(s) 308
BamHI GGATCC 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 917
Bbv12I GWGCWC 1 cut(s) 990
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 3 cut(s) 182, 640, 846
BccI CCATC 1 cut(s) 329
BceAI ACGGC 1 cut(s) 686
BciT130I CCWGG 1 cut(s) 938
BfaI CTAG 5 cut(s) 60, 77, 309, 437, 591
BfmI CTRYAG 3 cut(s) 528, 648, 873
BisI GCNGC 3 cut(s) 171, 654, 860
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 3 cut(s) 172, 655, 861
Bme1390I CCNGG 1 cut(s) 938
Bme18I GGWCC 1 cut(s) 1007
BmgBI CACGTC 1 cut(s) 506
BmgT120I GGNCC 2 cut(s) 329, 1007
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 1 cut(s) 938
BmrI ACTGGG 1 cut(s) 1030
BmsI GCATC 7 cut(s) 100, 157, 198, 253, 394, 634, 773
BmuI ACTGGG 1 cut(s) 1030
BpiI GAAGAC 1 cut(s) 917
BpmI CTGGAG 1 cut(s) 422
Bpu10I CCTNAGC 1 cut(s) 27
Bpu14I TTCGAA 2 cut(s) 512, 661
BsaJI CCNNGG 3 cut(s) 308, 475, 937
BsaWI WCCGGW 1 cut(s) 640
Bsc4I CCNNNNNNNGG 1 cut(s) 899
Bse118I RCCGGY 1 cut(s) 1009
Bse1I ACTGG 2 cut(s) 405, 1025
Bse3DI GCAATG 1 cut(s) 139
BseAI TCCGGA 1 cut(s) 640
BseBI CCWGG 1 cut(s) 938
BseDI CCNNGG 3 cut(s) 308, 475, 937
BseGI GGATG 2 cut(s) 115, 649
BseLI CCNNNNNNNGG 1 cut(s) 899
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 3 cut(s) 18, 665, 791
BseNI ACTGG 2 cut(s) 405, 1025
BsePI GCGCGC 1 cut(s) 1083
BseRI GAGGAG 2 cut(s) 186, 882
BseXI GCAGC 3 cut(s) 182, 640, 846
Bsh1236I CGCG 1 cut(s) 1085
BshFI GGCC 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 990
BsiSI CCGG 3 cut(s) 114, 641, 1010
BslFI GGGAC 2 cut(s) 94, 779
BslI CCNNNNNNNGG 1 cut(s) 899
BsmFI GGGAC 2 cut(s) 94, 779
BsnI GGCC 1 cut(s) 330
Bsp119I TTCGAA 2 cut(s) 512, 661
Bsp1286I GDGCHC 1 cut(s) 990
Bsp13I TCCGGA 1 cut(s) 640
Bsp143I GATC 3 cut(s) 479, 604, 637
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 2 cut(s) 608, 788
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 3 cut(s) 19, 666, 790
BspEI TCCGGA 1 cut(s) 640
BspFNI CGCG 1 cut(s) 1085
BspLI GGNNCC 1 cut(s) 481
BspPI GGATC 4 cut(s) 474, 487, 599, 632
BspT104I TTCGAA 2 cut(s) 512, 661
BsrDI GCAATG 1 cut(s) 139
BsrFI RCCGGY 1 cut(s) 1009
BsrI ACTGG 2 cut(s) 405, 1025
BssAI RCCGGY 1 cut(s) 1009
BssECI CCNNGG 3 cut(s) 308, 475, 937
BssHII GCGCGC 1 cut(s) 1083
BssMI GATC 3 cut(s) 479, 604, 637
BssT1I CCWWGG 2 cut(s) 308, 475
Bst2UI CCWGG 1 cut(s) 938
Bst4CI ACNGT 5 cut(s) 487, 719, 868, 874, 961
BstBI TTCGAA 2 cut(s) 512, 661
BstC8I GCNNGC 3 cut(s) 214, 849, 1085
BstDEI CTNAG 3 cut(s) 27, 674, 777
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 115, 649
BstFNI CGCG 1 cut(s) 1085
BstHHI GCGC 4 cut(s) 146, 455, 1085, 1087
BstKTI GATC 3 cut(s) 482, 607, 640
BstMBI GATC 3 cut(s) 479, 604, 637
BstMWI GCNNNNNNNGC 3 cut(s) 653, 830, 1080
BstNI CCWGG 1 cut(s) 938
BstNSI RCATGY 2 cut(s) 216, 617
BstSCI CCNGG 1 cut(s) 936
BstSFI CTRYAG 3 cut(s) 528, 648, 873
BstUI CGCG 1 cut(s) 1085
BstV1I GCAGC 3 cut(s) 182, 640, 846
BstV2I GAAGAC 1 cut(s) 917
BstX2I RGATCY 2 cut(s) 479, 637
BstYI RGATCY 2 cut(s) 479, 637
BsuRI GGCC 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 475
BtrI CACGTC 1 cut(s) 506
BtsCI GGATG 2 cut(s) 115, 649
BtsIMutI CAGTG 3 cut(s) 46, 483, 870
Cac8I GCNNGC 3 cut(s) 214, 849, 1085
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 4 cut(s) 146, 455, 1085, 1087
Cfr10I RCCGGY 1 cut(s) 1009
Cfr13I GGNCC 2 cut(s) 329, 1007
Csp6I GTAC 1 cut(s) 440
CviAII CATG 7 cut(s) 213, 378, 450, 476, 614, 896, 1079
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 3 cut(s) 27, 674, 777
DpnI GATC 3 cut(s) 481, 606, 639
DpnII GATC 3 cut(s) 479, 604, 637
EciI GGCGGA 1 cut(s) 597
Eco130I CCWWGG 2 cut(s) 308, 475
Eco47I GGWCC 1 cut(s) 1007
EcoO109I RGGNCCY 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 936
EcoT14I CCWWGG 2 cut(s) 308, 475
EcoT22I ATGCAT 1 cut(s) 218
ErhI CCWWGG 2 cut(s) 308, 475
FaeI CATG 7 cut(s) 216, 381, 453, 479, 617, 899, 1082
FaqI GGGAC 2 cut(s) 94, 779
FatI CATG 7 cut(s) 212, 377, 449, 475, 613, 895, 1078
Fnu4HI GCNGC 3 cut(s) 171, 654, 860
FokI GGATG 2 cut(s) 122, 656
Fsp4HI GCNGC 3 cut(s) 171, 654, 860
FspAI RTGCGCAY 1 cut(s) 454
FspBI CTAG 5 cut(s) 60, 77, 309, 437, 591
FspI TGCGCA 1 cut(s) 454
GlaI GCGC 4 cut(s) 145, 454, 1084, 1086
GluI GCNGC 3 cut(s) 171, 654, 860
GsuI CTGGAG 1 cut(s) 422
HaeIII GGCC 1 cut(s) 330
HapII CCGG 3 cut(s) 114, 641, 1010
HhaI GCGC 4 cut(s) 146, 455, 1085, 1087
Hin1II CATG 7 cut(s) 216, 381, 453, 479, 617, 899, 1082
Hin6I GCGC 4 cut(s) 144, 453, 1083, 1085
HinP1I GCGC 4 cut(s) 144, 453, 1083, 1085
HinfI GANTC 5 cut(s) 36, 82, 149, 569, 996
HpaII CCGG 3 cut(s) 114, 641, 1010
HphI GGTGA 1 cut(s) 48
Hpy166II GTNNAC 3 cut(s) 442, 503, 701
Hpy188I TCNGA 5 cut(s) 22, 154, 524, 769, 780
Hpy188III TCNNGA 5 cut(s) 101, 239, 286, 389, 641
Hpy8I GTNNAC 3 cut(s) 442, 503, 701
HpyAV CCTTC 2 cut(s) 41, 657
HpyCH4III ACNGT 5 cut(s) 487, 719, 868, 874, 961
HpyCH4IV ACGT 2 cut(s) 505, 1015
HpyCH4V TGCA 6 cut(s) 170, 216, 420, 749, 764, 812
HpyF10VI GCNNNNNNNGC 3 cut(s) 653, 830, 1080
HpyF3I CTNAG 3 cut(s) 27, 674, 777
HpySE526I ACGT 2 cut(s) 505, 1015
Hsp92II CATG 7 cut(s) 216, 381, 453, 479, 617, 899, 1082
HspAI GCGC 4 cut(s) 144, 453, 1083, 1085
Kpn2I TCCGGA 1 cut(s) 640
Kzo9I GATC 3 cut(s) 479, 604, 637
LmnI GCTCC 2 cut(s) 403, 895
Lsp1109I GCAGC 3 cut(s) 182, 640, 846
LweI GCATC 7 cut(s) 100, 157, 198, 253, 394, 634, 773
MaeI CTAG 5 cut(s) 60, 77, 309, 437, 591
MaeII ACGT 2 cut(s) 505, 1015
MaeIII GTNAC 4 cut(s) 713, 719, 868, 1016
MalI GATC 3 cut(s) 481, 606, 639
MboI GATC 3 cut(s) 479, 604, 637
MboII GAAGA 5 cut(s) 526, 539, 782, 916, 917
MflI RGATCY 2 cut(s) 479, 637
MhlI GDGCHC 1 cut(s) 990
MluCI AATT 4 cut(s) 13, 739, 945, 1059
MlyI GAGTC 2 cut(s) 45, 76
MmeI TCCRAC 2 cut(s) 13, 277
MnlI CCTC 6 cut(s) 22, 37, 207, 786, 903, 935
Mph1103I ATGCAT 1 cut(s) 218
MroI TCCGGA 1 cut(s) 640
MseI TTAA 2 cut(s) 575, 956
MslI CAYNNNNRTG 3 cut(s) 460, 708, 875
MspI CCGG 3 cut(s) 114, 641, 1010
MspR9I CCNGG 1 cut(s) 938
MvaI CCWGG 1 cut(s) 938
MvnI CGCG 1 cut(s) 1085
MwoI GCNNNNNNNGC 3 cut(s) 653, 830, 1080
NcoI CCATGG 1 cut(s) 475
NdeII GATC 3 cut(s) 479, 604, 637
NlaIII CATG 7 cut(s) 216, 381, 453, 479, 617, 899, 1082
NlaIV GGNNCC 1 cut(s) 481
NmuCI GTSAC 1 cut(s) 868
NsbI TGCGCA 1 cut(s) 454
NsiI ATGCAT 1 cut(s) 218
NspI RCATGY 2 cut(s) 216, 617
NspV TTCGAA 2 cut(s) 512, 661
OliI CACNNNNGTG 1 cut(s) 875
PaeI GCATGC 1 cut(s) 216
PauI GCGCGC 1 cut(s) 1083
PfeI GAWTC 3 cut(s) 149, 569, 996
PkrI GCNGC 3 cut(s) 172, 655, 861
PleI GAGTC 2 cut(s) 44, 76
PpsI GAGTC 2 cut(s) 44, 76
Psp6I CCWGG 1 cut(s) 936
PspGI CCWGG 1 cut(s) 936
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 2 cut(s) 329, 1007
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 2 cut(s) 479, 637
PteI GCGCGC 1 cut(s) 1083
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
RseI CAYNNNNRTG 3 cut(s) 460, 708, 875
SaqAI TTAA 2 cut(s) 575, 956
SatI GCNGC 3 cut(s) 171, 654, 860
Sau3AI GATC 3 cut(s) 479, 604, 637
Sau96I GGNCC 2 cut(s) 329, 1007
SchI GAGTC 2 cut(s) 45, 76
ScrFI CCNGG 1 cut(s) 938
SduI GDGCHC 1 cut(s) 990
SfaNI GCATC 7 cut(s) 100, 157, 198, 253, 394, 634, 773
SfcI CTRYAG 3 cut(s) 528, 648, 873
SfuI TTCGAA 2 cut(s) 512, 661
SinI GGWCC 1 cut(s) 1007
SmiMI CAYNNNNRTG 3 cut(s) 460, 708, 875
SphI GCATGC 1 cut(s) 216
Sse9I AATT 4 cut(s) 13, 739, 945, 1059
SsiI CCGC 2 cut(s) 608, 788
SspI AATATT 1 cut(s) 1029
SspMI CTAG 5 cut(s) 60, 77, 309, 437, 591
StyD4I CCNGG 1 cut(s) 936
StyI CCWWGG 2 cut(s) 308, 475
TaaI ACNGT 5 cut(s) 487, 719, 868, 874, 961
TaiI ACGT 2 cut(s) 508, 1018
TaqI TCGA 3 cut(s) 512, 661, 976
TasI AATT 4 cut(s) 13, 739, 945, 1059
TatI WGTACW 1 cut(s) 439
TfiI GAWTC 3 cut(s) 149, 569, 996
Tru1I TTAA 2 cut(s) 575, 956
Tru9I TTAA 2 cut(s) 575, 956
TscAI CASTG 3 cut(s) 46, 490, 877
TseFI GTSAC 1 cut(s) 868
TseI GCWGC 3 cut(s) 170, 653, 859
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 7 cut(s) 318, 337, 366, 438, 543, 582, 917
TspRI CASTG 3 cut(s) 46, 490, 877
VpaK11BI GGWCC 1 cut(s) 1007
XapI RAATTY 3 cut(s) 13, 945, 1059
XceI RCATGY 2 cut(s) 216, 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 823
XmaJI CCTAGG 1 cut(s) 308
XspI CTAG 5 cut(s) 60, 77, 309, 437, 591
Zsp2I ATGCAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.