Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003198

Physical Location & Seq

Genomic Coordinates Forward (+)

23668399 .. 23676504

Gene Structure 8106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G280400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGTAAGGAAAACTTATCGGAAGCTAGCATCGGAGCTAGTGAGGAAGGTGACTCACCTGGACAGAGTGATTCTTTAGGTACTCACTCACGCCATAGTCTTGACAATGAGGCCGGCTTATCAACTTGTCGCGTGTGCCAATGTGCTGAATCTGACAAAAGGGGAGATGCAGCTTTAGAGTTTTTGGGTATCACTCCTCCTACACAAGAAACATGTATAAGCCATGGGCAAGTAAAGCCTGATAGCAGGGTAGCCCTTAAAGATGCTGAAGGTGATATGTATGTCAAGAAAAATGCTGGAAAAGAATCTGGGTTTTTGGAGTTTATAAGCCCTGATGGAGAGGTTTTCATTTGTGGTGCTGATTTAGAGACAGGTTCATGTCACCATGAAGACACATTAGTTGAGCTTGGTTGCTCTTGCAAAAATGACCTTGCTTTGGTACACTATGCGTGTGCACTCAAATGGTTTATCAACCATGGGTCCACTGTTTGTGAAATCTGTGGACGTCTAGCAAAAAATATCAGAATTTCAGACTTCAAAAAGGTTATGATTTCCTTGAAGGAGTATGAAATATTGAGGGAAAGAACAGCTAGGGGGGAACCGGATGCCACACAGGTTAATACAAGTACAGGTATAGATCCTGATGCTGTAGCTGCTATCAGAAGGCAAAGACTGAGTGAGATTTCACTATGGTTTACCCCGCATAATAATAGTAACAATAATAACAATACAAGTACCAATTCTGTTTCAATTTCACAAGCTGTATCAGAACAACCTCAGAATACTGTTGTTGCCCCTGCTGAAAATCCTGCAACCAAGTGGGCTGTGGAAGGTACCGGGATTCTGCTTGCTACAGGGCTGCTTACTGTTACTCTTGCATGGCTTATAGCTCCTCGTGTTGGGAAGAAAACTGCCAGCAGCGGTCTTCATATTCTCCTGGGAGGAATTTGTGCTTTAACAGTAGTGGTTTTCTTCCGCTTTTTTGTGCTCACCAGAATCAAGTATGGACCTGCTCGCTACTGGGCAATATTATTCGTCTTTTGGTTTCTTGTCTTTGGTATTTGGGCTTCACGGACACACAGTTCTCATACAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

366

Amino Acids

39.64

Weight (kDa)

6.01

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750
fragaria_vesca	FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260
malus_domestica	MD15G1137500.v1.1
prunus_persica	Prupe.4G280400_v2.0.a1 Prupe.4G280400_v2.0.a1 Prupe.4G280400_v2.0.a1
pyrus_communis	pycom15g12390
rosa_chinensis	RchiOBHm_Chr2g0123181
rosa_laevigata	RLG00000018736
rosa_multiflora	Rmu_sc0005810.1_g000004
rosa_roxburghii	Rroxscaffold_2G00120850
rosa_rugosa	Rorug02G0243800 Rorug02G0243900 Rorug02G0244000 Rorug02G0244100
rosa_samantha	Rh2AG303200 Rh2BG311100 Rh2CG289700 Rh2DG327200
rosa_wichuraiana	Rw2G024150 Rw2G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
AatII	GACGTC	1 cut(s)	508
Acc36I	ACCTGC	1 cut(s)	1018
Acc65I	GGTACC	1 cut(s)	833
AccB1I	GGYRCC	1 cut(s)	833
AccII	CGCG	1 cut(s)	132
AciI	CCGC	3 cut(s)	701, 921, 976
AclWI	GGATC	1 cut(s)	632
AcsI	RAATTY	2 cut(s)	525, 945
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	505
AfaI	GTAC	5 cut(s)	82, 441, 628, 736, 835
AfiI	CCNNNNNNNGG	2 cut(s)	436, 899
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	538, 559, 750
AjnI	CCWGG	2 cut(s)	58, 936
AloI	GAACNNNNNNTCC	2 cut(s)	1066, 1098
AluBI	AGCT	8 cut(s)	26, 38, 173, 406, 590, 653, 761, 890
AluI	AGCT	8 cut(s)	26, 38, 173, 406, 590, 653, 761, 890
Alw21I	GWGCWC	2 cut(s)	457, 990
Alw26I	GTCTC	1 cut(s)	362
Alw44I	GTGCAC	1 cut(s)	453
AlwI	GGATC	1 cut(s)	632
AoxI	GGCC	1 cut(s)	111
ApaLI	GTGCAC	1 cut(s)	453
ApeKI	GCWGC	4 cut(s)	170, 653, 859, 918
ApoI	RAATTY	2 cut(s)	525, 945
Asp718I	GGTACC	1 cut(s)	833
AspS9I	GGNCC	2 cut(s)	480, 1007
AsuC2I	CCSGG	1 cut(s)	838
AsuHPI	GGTGA	5 cut(s)	48, 62, 284, 374, 982
AsuNHI	GCTAGC	1 cut(s)	26
AvaII	GGWCC	2 cut(s)	480, 1007
BaeGI	GKGCMC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	833
BarI	GAAGNNNNNNTAC	2 cut(s)	1051, 1083
BauI	CACGAG	1 cut(s)	894
BbsI	GAAGAC	2 cut(s)	396, 917
Bbv12I	GWGCWC	2 cut(s)	457, 990
BbvI	GCAGC	4 cut(s)	182, 640, 846, 930
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	2 cut(s)	60, 938
BcnI	CCSGG	1 cut(s)	838
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	4 cut(s)	27, 39, 509, 591
BfmI	CTRYAG	2 cut(s)	648, 852
BfuAI	ACCTGC	1 cut(s)	1018
BisI	GCNGC	4 cut(s)	171, 654, 860, 919
BlsI	GCNGC	4 cut(s)	172, 655, 861, 920
Bme1390I	CCNGG	3 cut(s)	60, 838, 938
Bme18I	GGWCC	2 cut(s)	480, 1007
BmgT120I	GGNCC	2 cut(s)	480, 1007
BmiI	GGNNCC	3 cut(s)	481, 600, 835
BmrFI	CCNGG	3 cut(s)	60, 838, 938
BmrI	ACTGGG	1 cut(s)	1030
BmsI	GCATC	5 cut(s)	39, 157, 253, 595, 634
BmtI	GCTAGC	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	1030
BpiI	GAAGAC	2 cut(s)	396, 917
BpuMI	CCSGG	1 cut(s)	838
BsaHI	GRCGYC	1 cut(s)	505
BsaJI	CCNNGG	3 cut(s)	223, 475, 937
BsaWI	WCCGGW	1 cut(s)	601
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 899
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	1025
BseBI	CCWGG	2 cut(s)	60, 938
BseDI	CCNNGG	3 cut(s)	223, 475, 937
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	2 cut(s)	436, 899
BseMII	CTCAG	2 cut(s)	665, 791
BseNI	ACTGG	1 cut(s)	1025
BseRI	GAGGAG	2 cut(s)	186, 882
BseSI	GKGCMC	1 cut(s)	457
BseXI	GCAGC	4 cut(s)	182, 640, 846, 930
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	833
BsiHKAI	GWGCWC	2 cut(s)	457, 990
BsiSI	CCGG	3 cut(s)	114, 602, 837
BslI	CCNNNNNNNGG	2 cut(s)	436, 899
BsmAI	GTCTC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	457, 990
Bsp143I	GATC	1 cut(s)	637
Bsp19I	CCATGG	2 cut(s)	223, 475
BspACI	CCGC	3 cut(s)	701, 921, 976
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	2 cut(s)	666, 790
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	3 cut(s)	481, 600, 835
BspMI	ACCTGC	1 cut(s)	1018
BspOI	GCTAGC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	632
BspT107I	GGYRCC	1 cut(s)	833
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	1025
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	3 cut(s)	223, 475, 937
BssMI	GATC	1 cut(s)	637
BssNI	GRCGYC	1 cut(s)	505
BssSI	CACGAG	1 cut(s)	894
BssT1I	CCWWGG	2 cut(s)	223, 475
Bst2BI	CACGAG	1 cut(s)	894
Bst2UI	CCWGG	2 cut(s)	60, 938
Bst4CI	ACNGT	5 cut(s)	487, 787, 868, 961, 1082
BstACI	GRCGYC	1 cut(s)	505
BstC8I	GCNNGC	5 cut(s)	28, 115, 849, 916, 1015
BstDEI	CTNAG	2 cut(s)	674, 777
BstDSI	CCRYGG	2 cut(s)	223, 475
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	640
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	1 cut(s)	637
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 653
BstNI	CCWGG	2 cut(s)	60, 938
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	3 cut(s)	58, 836, 936
BstSFI	CTRYAG	2 cut(s)	648, 852
BstSLI	GKGCMC	1 cut(s)	457
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	4 cut(s)	182, 640, 846, 930
BstV2I	GAAGAC	2 cut(s)	396, 917
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	2 cut(s)	223, 475
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	1 cut(s)	483
BveI	ACCTGC	1 cut(s)	1018
Cac8I	GCNNGC	5 cut(s)	28, 115, 849, 916, 1015
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	480, 1007
Csp6I	GTAC	5 cut(s)	81, 440, 627, 735, 834
CviAII	CATG	7 cut(s)	213, 224, 378, 386, 476, 879, 1095
CviQI	GTAC	5 cut(s)	81, 440, 627, 735, 834
DdeI	CTNAG	2 cut(s)	674, 777
DpnI	GATC	1 cut(s)	639
DpnII	GATC	1 cut(s)	637
Eco130I	CCWWGG	2 cut(s)	223, 475
Eco47I	GGWCC	2 cut(s)	480, 1007
Eco57I	CTGAAG	1 cut(s)	288
EcoRII	CCWGG	2 cut(s)	58, 936
EcoT14I	CCWWGG	2 cut(s)	223, 475
ErhI	CCWWGG	2 cut(s)	223, 475
FaeI	CATG	7 cut(s)	216, 227, 381, 389, 479, 882, 1098
FalI	AAGNNNNNCTT	1 cut(s)	31
FatI	CATG	7 cut(s)	212, 223, 377, 385, 475, 878, 1094
FauI	CCCGC	1 cut(s)	708
Fnu4HI	GCNGC	4 cut(s)	171, 654, 860, 919
FokI	GGATG	1 cut(s)	617
Fsp4HI	GCNGC	4 cut(s)	171, 654, 860, 919
FspBI	CTAG	4 cut(s)	27, 39, 509, 591
GluI	GCNGC	4 cut(s)	171, 654, 860, 919
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	3 cut(s)	114, 602, 837
Hin1I	GRCGYC	1 cut(s)	505
Hin1II	CATG	7 cut(s)	216, 227, 381, 389, 479, 882, 1098
HinfI	GANTC	6 cut(s)	53, 71, 149, 305, 841, 996
HpaII	CCGG	3 cut(s)	114, 602, 837
HphI	GGTGA	5 cut(s)	48, 62, 284, 374, 982
Hpy166II	GTNNAC	5 cut(s)	442, 455, 483, 503, 696
Hpy188I	TCNGA	8 cut(s)	22, 35, 154, 524, 532, 662, 769, 780
Hpy188III	TCNNGA	3 cut(s)	101, 286, 641
Hpy8I	GTNNAC	5 cut(s)	442, 455, 483, 503, 696
HpyAV	CCTTC	5 cut(s)	41, 263, 553, 657, 824
HpyCH4III	ACNGT	5 cut(s)	487, 787, 868, 961, 1082
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	5 cut(s)	170, 420, 455, 812, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 653
HpyF3I	CTNAG	2 cut(s)	674, 777
HpySE526I	ACGT	1 cut(s)	505
Hsp92I	GRCGYC	1 cut(s)	505
Hsp92II	CATG	7 cut(s)	216, 227, 381, 389, 479, 882, 1098
KpnI	GGTACC	1 cut(s)	837
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	637
LmnI	GCTCC	2 cut(s)	35, 895
Lsp1109I	GCAGC	4 cut(s)	182, 640, 846, 930
LweI	GCATC	5 cut(s)	39, 157, 253, 595, 634
MaeI	CTAG	4 cut(s)	27, 39, 509, 591
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	4 cut(s)	50, 380, 713, 868
MalI	GATC	1 cut(s)	639
MboI	GATC	1 cut(s)	637
MboII	GAAGA	4 cut(s)	401, 916, 917, 964
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	2 cut(s)	457, 990
MluCI	AATT	4 cut(s)	525, 739, 750, 945
MlyI	GAGTC	1 cut(s)	47
MnlI	CCTC	8 cut(s)	37, 103, 207, 334, 570, 786, 903, 935
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	3 cut(s)	258, 618, 956
MslI	CAYNNNNRTG	1 cut(s)	460
MspA1I	CMGCKG	1 cut(s)	921
MspI	CCGG	3 cut(s)	114, 602, 837
MspR9I	CCNGG	3 cut(s)	60, 838, 938
MvaI	CCWGG	2 cut(s)	60, 938
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	235, 653
NaeI	GCCGGC	1 cut(s)	115
NciI	CCSGG	1 cut(s)	838
NcoI	CCATGG	2 cut(s)	223, 475
NdeII	GATC	1 cut(s)	637
NgoMIV	GCCGGC	1 cut(s)	113
NheI	GCTAGC	1 cut(s)	26
NlaIII	CATG	7 cut(s)	216, 227, 381, 389, 479, 882, 1098
NlaIV	GGNNCC	3 cut(s)	481, 600, 835
NmuCI	GTSAC	2 cut(s)	50, 380
NspI	RCATGY	1 cut(s)	216
PciI	ACATGT	1 cut(s)	212
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	5 cut(s)	71, 149, 305, 841, 996
PkrI	GCNGC	4 cut(s)	172, 655, 861, 920
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PscI	ACATGT	1 cut(s)	212
PsiI	TTATAA	1 cut(s)	326
Psp6I	CCWGG	2 cut(s)	58, 936
PspGI	CCWGG	2 cut(s)	58, 936
PspN4I	GGNNCC	3 cut(s)	481, 600, 835
PspPI	GGNCC	2 cut(s)	480, 1007
PsuI	RGATCY	1 cut(s)	637
RsaI	GTAC	5 cut(s)	82, 441, 628, 736, 835
RsaNI	GTAC	5 cut(s)	81, 440, 627, 735, 834
RseI	CAYNNNNRTG	1 cut(s)	460
SaqAI	TTAA	3 cut(s)	258, 618, 956
SatI	GCNGC	4 cut(s)	171, 654, 860, 919
Sau3AI	GATC	1 cut(s)	637
Sau96I	GGNCC	2 cut(s)	480, 1007
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	3 cut(s)	60, 838, 938
SduI	GDGCHC	2 cut(s)	457, 990
SfaNI	GCATC	5 cut(s)	39, 157, 253, 595, 634
SfcI	CTRYAG	2 cut(s)	648, 852
SinI	GGWCC	2 cut(s)	480, 1007
SmiMI	CAYNNNNRTG	1 cut(s)	460
Sse9I	AATT	4 cut(s)	525, 739, 750, 945
SsiI	CCGC	3 cut(s)	701, 921, 976
SspI	AATATT	2 cut(s)	573, 1029
SspMI	CTAG	4 cut(s)	27, 39, 509, 591
StyD4I	CCNGG	3 cut(s)	58, 836, 936
StyI	CCWWGG	2 cut(s)	223, 475
TaaI	ACNGT	5 cut(s)	487, 787, 868, 961, 1082
TaiI	ACGT	1 cut(s)	508
TasI	AATT	4 cut(s)	525, 739, 750, 945
TatI	WGTACW	1 cut(s)	626
TfiI	GAWTC	5 cut(s)	71, 149, 305, 841, 996
Tru1I	TTAA	3 cut(s)	258, 618, 956
Tru9I	TTAA	3 cut(s)	258, 618, 956
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	2 cut(s)	50, 380
TseI	GCWGC	4 cut(s)	170, 653, 859, 918
Tsp45I	GTSAC	2 cut(s)	50, 380
TspDTI	ATGAA	5 cut(s)	337, 366, 402, 582, 917
TspGWI	ACGGA	1 cut(s)	1087
TspRI	CASTG	1 cut(s)	490
VneI	GTGCAC	1 cut(s)	453
VpaK11BI	GGWCC	2 cut(s)	480, 1007
XapI	RAATTY	2 cut(s)	525, 945
XceI	RCATGY	1 cut(s)	216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	823
XspI	CTAG	4 cut(s)	27, 39, 509, 591
ZraI	GACGTC	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.