Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003198

Physical Location & Seq

Genomic Coordinates Forward (+)

8471496 .. 8475038

Gene Structure 3543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g12390.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGCAAGGAAAGCTTATCAGAAGCTAGCATTGTAGCCTGTGAGGATAGCTCACCTGGACATAGTGATGATATTGATACTCAAGCATGCCATAGTCTTGACAACGAGGCCGGCTTGCTAACTTGTCGCGTGTGCCATTGTGCTGAATCGGACAAAAGGGGAGATGCAGCGTTAGGGTTTCTGGGTATTGTTCCTCCTTTACAAGAAGTATGTATAAGCAACGGGGAAGTAAAACCTCATAGCACGGTAGTCCCTAAATGTGATATATCTGCCCAGAAAAATGTTGGAAAAGAATCTGGTTTTTTGGAGTTTATAAGCCCTGATGGAGAGGTTTTCATATGTAGTGCTGATTTAGAGACTGGTTCATGTCACCATGAAGACATGTTAGTTGAGCTTGGTTGCTCTTGCAAAAATGACCTTGCTCTGGTACACTACGCTTGTGCACTCAAATGGTTTGTCAACCATGGATCCACTGTTTGTGAAATCTGCGGACGTGTTGCAAAAAATATCAGACCTTCAGACTTCAATAAGGTTATGGTCTCCTTAAAGGAGTATGAAACATTGAGGGAAAGAACTGCTAGGGGGGAAGCCGATGCCACACAGGTCAATACATGTACAGGTATAGATCCTGATGCTGTAGCTGCTATCAGAAGGCAACGACTGAGTGAAATTTCACTGTGGTTTACTCCATATGGTAATAGCAGTAGTAACAATAATACAGATAGCAATTCTGTTGCAATTTCACAAGTTGTACCGGAACAACCTTTGAATCCTGTCATTGTTCCTGCTGAAAATCCTGCAACCAAATGGGCTGTGGAAGGTACTGGAATTCTGCTTGCTACAGGGCTTCTTACTGTTACTCTTGCATGGCTTATAGCTCCTCGTGTTGGGAAGAAAACTGCCAGAAGCGGTCTTCATATTCTCCTTGGAGGAATTTGTGCTTTGACAGTTGTGGTTTTCTTTCGCTTTTTTGTGCTCACCAGGATCAAGTATGGACCTGCACGCTACTGGGCAATATTATTCGTTTTCTGGTTTCTAGTTTTTGGTATCTGGGCGTCACGGACACATGGTTCCCATACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

362

Amino Acids

39.13

Weight (kDa)

5.78

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750
fragaria_vesca	FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260
malus_domestica	MD15G1137500.v1.1
prunus_persica	Prupe.4G280400_v2.0.a1 Prupe.4G280400_v2.0.a1 Prupe.4G280400_v2.0.a1
pyrus_communis	pycom15g12390
rosa_chinensis	RchiOBHm_Chr2g0123181
rosa_laevigata	RLG00000018736
rosa_multiflora	Rmu_sc0005810.1_g000004
rosa_roxburghii	Rroxscaffold_2G00120850
rosa_rugosa	Rorug02G0243800 Rorug02G0243900 Rorug02G0244000 Rorug02G0244100
rosa_samantha	Rh2AG303200 Rh2BG311100 Rh2CG289700 Rh2DG327200
rosa_wichuraiana	Rw2G024150 Rw2G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	1006
AccII	CGCG	1 cut(s)	129
AciI	CCGC	2 cut(s)	489, 909
AclWI	GGATC	4 cut(s)	462, 475, 620, 992
AcsI	RAATTY	3 cut(s)	669, 828, 933
AcuI	CTGAAG	1 cut(s)	501
AcyI	GRCGYC	1 cut(s)	1055
AfaI	GTAC	4 cut(s)	429, 616, 753, 823
AfiI	CCNNNNNNNGG	2 cut(s)	424, 887
AflIII	ACRYGT	3 cut(s)	381, 493, 611
AgsI	TTSAA	2 cut(s)	526, 769
AjiI	CACGTC	1 cut(s)	494
AjnI	CCWGG	2 cut(s)	55, 980
AloI	GAACNNNNNNTCC	2 cut(s)	1054, 1086
AluBI	AGCT	6 cut(s)	15, 26, 51, 394, 641, 878
AluI	AGCT	6 cut(s)	15, 26, 51, 394, 641, 878
Alw21I	GWGCWC	2 cut(s)	445, 978
Alw26I	GTCTC	2 cut(s)	350, 544
Alw44I	GTGCAC	1 cut(s)	441
AlwI	GGATC	4 cut(s)	462, 475, 620, 992
AoxI	GGCC	1 cut(s)	108
ApaLI	GTGCAC	1 cut(s)	441
ApeKI	GCWGC	2 cut(s)	167, 641
ApoI	RAATTY	3 cut(s)	669, 828, 933
ArsI	GACNNNNNNTTYG	2 cut(s)	441, 473
AspS9I	GGNCC	1 cut(s)	995
AsuHPI	GGTGA	3 cut(s)	45, 362, 970
AsuNHI	GCTAGC	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	995
BaeGI	GKGCMC	1 cut(s)	445
BamHI	GGATCC	1 cut(s)	467
BauI	CACGAG	1 cut(s)	882
BbsI	GAAGAC	2 cut(s)	384, 905
Bbv12I	GWGCWC	2 cut(s)	445, 978
BbvI	GCAGC	2 cut(s)	179, 628
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	2 cut(s)	57, 982
BcoDI	GTCTC	2 cut(s)	350, 544
BfaI	CTAG	3 cut(s)	27, 579, 1037
BfmI	CTRYAG	2 cut(s)	636, 840
BfuAI	ACCTGC	1 cut(s)	1006
BisI	GCNGC	2 cut(s)	168, 642
BlsI	GCNGC	2 cut(s)	169, 643
Bme1390I	CCNGG	2 cut(s)	57, 982
Bme18I	GGWCC	1 cut(s)	995
BmgBI	CACGTC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	995
BmiI	GGNNCC	2 cut(s)	469, 1072
BmrFI	CCNGG	2 cut(s)	57, 982
BmrI	ACTGGG	1 cut(s)	1018
BmsI	GCATC	3 cut(s)	154, 583, 622
BmtI	GCTAGC	1 cut(s)	30
BmuI	ACTGGG	1 cut(s)	1018
BpiI	GAAGAC	2 cut(s)	384, 905
BplI	GAGNNNNNCTC	2 cut(s)	35, 67
BpuEI	CTTGAG	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	1055
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	2 cut(s)	463, 925
BsaWI	WCCGGW	1 cut(s)	754
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 887
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	364, 829, 1013
BseBI	CCWGG	2 cut(s)	57, 982
BseDI	CCNNGG	2 cut(s)	463, 925
BseLI	CCNNNNNNNGG	2 cut(s)	424, 887
BseMII	CTCAG	1 cut(s)	653
BseNI	ACTGG	3 cut(s)	364, 829, 1013
BseRI	GAGGAG	1 cut(s)	870
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	2 cut(s)	179, 628
BsgI	GTGCAG	1 cut(s)	984
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	110
BsiHKAI	GWGCWC	2 cut(s)	445, 978
BsiSI	CCGG	2 cut(s)	111, 755
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	424, 887
BsmAI	GTCTC	2 cut(s)	350, 544
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	110
Bso31I	GGTCTC	1 cut(s)	544
Bsp1286I	GDGCHC	2 cut(s)	445, 978
Bsp1407I	TGTACA	1 cut(s)	614
Bsp143I	GATC	3 cut(s)	467, 625, 984
Bsp19I	CCATGG	1 cut(s)	463
BspACI	CCGC	2 cut(s)	489, 909
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	654
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	469, 1072
BspMI	ACCTGC	1 cut(s)	1006
BspOI	GCTAGC	1 cut(s)	30
BspPI	GGATC	4 cut(s)	462, 475, 620, 992
BspTNI	GGTCTC	1 cut(s)	544
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	614
BsrI	ACTGG	3 cut(s)	364, 829, 1013
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	463, 925
BssMI	GATC	3 cut(s)	467, 625, 984
BssNI	GRCGYC	1 cut(s)	1055
BssSI	CACGAG	1 cut(s)	882
BssT1I	CCWWGG	2 cut(s)	463, 925
Bst2BI	CACGAG	1 cut(s)	882
Bst2UI	CCWGG	2 cut(s)	57, 982
Bst4CI	ACNGT	5 cut(s)	247, 475, 678, 856, 949
BstACI	GRCGYC	1 cut(s)	1055
BstAUI	TGTACA	1 cut(s)	614
BstC8I	GCNNGC	6 cut(s)	28, 88, 112, 116, 837, 1003
BstDEI	CTNAG	1 cut(s)	662
BstDSI	CCRYGG	1 cut(s)	463
BstFNI	CGCG	1 cut(s)	129
BstKTI	GATC	3 cut(s)	470, 628, 987
BstMAI	GTCTC	2 cut(s)	350, 544
BstMBI	GATC	3 cut(s)	467, 625, 984
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 641
BstNI	CCWGG	2 cut(s)	57, 982
BstNSI	RCATGY	3 cut(s)	90, 385, 615
BstSCI	CCNGG	2 cut(s)	55, 980
BstSFI	CTRYAG	2 cut(s)	636, 840
BstSLI	GKGCMC	1 cut(s)	445
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	179, 628
BstV2I	GAAGAC	2 cut(s)	384, 905
BstX2I	RGATCY	2 cut(s)	467, 625
BstYI	RGATCY	2 cut(s)	467, 625
BsuRI	GGCC	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	463
BtrI	CACGTC	1 cut(s)	494
BtsIMutI	CAGTG	2 cut(s)	471, 674
BveI	ACCTGC	1 cut(s)	1006
Cac8I	GCNNGC	6 cut(s)	28, 88, 112, 116, 837, 1003
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	995
CseI	GACGC	1 cut(s)	1044
Csp6I	GTAC	4 cut(s)	428, 615, 752, 822
CviAII	CATG	8 cut(s)	87, 366, 374, 382, 464, 612, 867, 1067
CviQI	GTAC	4 cut(s)	428, 615, 752, 822
DdeI	CTNAG	1 cut(s)	662
DpnI	GATC	3 cut(s)	469, 627, 986
DpnII	GATC	3 cut(s)	467, 625, 984
Eco130I	CCWWGG	2 cut(s)	463, 925
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	995
Eco57I	CTGAAG	1 cut(s)	501
EcoRI	GAATTC	1 cut(s)	828
EcoRII	CCWGG	2 cut(s)	55, 980
EcoT14I	CCWWGG	2 cut(s)	463, 925
ErhI	CCWWGG	2 cut(s)	463, 925
FaeI	CATG	8 cut(s)	90, 369, 377, 385, 467, 615, 870, 1070
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	8 cut(s)	86, 365, 373, 381, 463, 611, 866, 1066
FauNDI	CATATG	2 cut(s)	338, 691
Fnu4HI	GCNGC	2 cut(s)	168, 642
Fsp4HI	GCNGC	2 cut(s)	168, 642
FspBI	CTAG	3 cut(s)	27, 579, 1037
GluI	GCNGC	2 cut(s)	168, 642
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	2 cut(s)	111, 755
HgaI	GACGC	1 cut(s)	1044
Hin1I	GRCGYC	1 cut(s)	1055
Hin1II	CATG	8 cut(s)	90, 369, 377, 385, 467, 615, 870, 1070
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	13
HinfI	GANTC	3 cut(s)	146, 293, 769
HpaII	CCGG	2 cut(s)	111, 755
HphI	GGTGA	3 cut(s)	45, 362, 970
Hpy166II	GTNNAC	4 cut(s)	430, 443, 460, 684
Hpy188I	TCNGA	5 cut(s)	22, 151, 512, 520, 650
Hpy188III	TCNNGA	2 cut(s)	98, 629
Hpy8I	GTNNAC	4 cut(s)	430, 443, 460, 684
HpyAV	CCTTC	3 cut(s)	525, 645, 812
HpyCH4III	ACNGT	5 cut(s)	247, 475, 678, 856, 949
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	8 cut(s)	167, 408, 443, 500, 737, 800, 866, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 641
HpyF3I	CTNAG	1 cut(s)	662
HpySE526I	ACGT	1 cut(s)	493
Hsp92I	GRCGYC	1 cut(s)	1055
Hsp92II	CATG	8 cut(s)	90, 369, 377, 385, 467, 615, 870, 1070
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	467, 625, 984
LmnI	GCTCC	1 cut(s)	883
Lsp1109I	GCAGC	2 cut(s)	179, 628
LweI	GCATC	3 cut(s)	154, 583, 622
MaeI	CTAG	3 cut(s)	27, 579, 1037
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	4 cut(s)	368, 707, 856, 1056
MalI	GATC	3 cut(s)	469, 627, 986
MboI	GATC	3 cut(s)	467, 625, 984
MboII	GAAGA	3 cut(s)	389, 904, 905
MflI	RGATCY	2 cut(s)	467, 625
MhlI	GDGCHC	2 cut(s)	445, 978
MluCI	AATT	5 cut(s)	669, 727, 738, 828, 933
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	8 cut(s)	37, 100, 204, 246, 322, 558, 891, 923
MroNI	GCCGGC	1 cut(s)	110
MseI	TTAA	1 cut(s)	545
MslI	CAYNNNNRTG	2 cut(s)	66, 448
MspI	CCGG	2 cut(s)	111, 755
MspR9I	CCNGG	2 cut(s)	57, 982
MvaI	CCWGG	2 cut(s)	57, 982
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	12, 641
NaeI	GCCGGC	1 cut(s)	112
NcoI	CCATGG	1 cut(s)	463
NdeI	CATATG	2 cut(s)	338, 691
NdeII	GATC	3 cut(s)	467, 625, 984
NgoMIV	GCCGGC	1 cut(s)	110
NheI	GCTAGC	1 cut(s)	26
NlaIII	CATG	8 cut(s)	90, 369, 377, 385, 467, 615, 870, 1070
NlaIV	GGNNCC	2 cut(s)	469, 1072
NmuCI	GTSAC	2 cut(s)	368, 1056
NspI	RCATGY	3 cut(s)	90, 385, 615
PaeI	GCATGC	1 cut(s)	90
PciI	ACATGT	2 cut(s)	381, 611
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	146, 293, 769
PkrI	GCNGC	2 cut(s)	169, 643
PscI	ACATGT	2 cut(s)	381, 611
PsiI	TTATAA	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	55, 980
PspGI	CCWGG	2 cut(s)	55, 980
PspN4I	GGNNCC	2 cut(s)	469, 1072
PspPI	GGNCC	1 cut(s)	995
PsuI	RGATCY	2 cut(s)	467, 625
RsaI	GTAC	4 cut(s)	429, 616, 753, 823
RsaNI	GTAC	4 cut(s)	428, 615, 752, 822
RseI	CAYNNNNRTG	2 cut(s)	66, 448
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	2 cut(s)	168, 642
Sau3AI	GATC	3 cut(s)	467, 625, 984
Sau96I	GGNCC	1 cut(s)	995
ScrFI	CCNGG	2 cut(s)	57, 982
SduI	GDGCHC	2 cut(s)	445, 978
SfaNI	GCATC	3 cut(s)	154, 583, 622
SfcI	CTRYAG	2 cut(s)	636, 840
SinI	GGWCC	1 cut(s)	995
SmiMI	CAYNNNNRTG	2 cut(s)	66, 448
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	5 cut(s)	669, 727, 738, 828, 933
SsiI	CCGC	2 cut(s)	489, 909
SspI	AATATT	1 cut(s)	1017
SspMI	CTAG	3 cut(s)	27, 579, 1037
StyD4I	CCNGG	2 cut(s)	55, 980
StyI	CCWWGG	2 cut(s)	463, 925
TaaI	ACNGT	5 cut(s)	247, 475, 678, 856, 949
TaiI	ACGT	1 cut(s)	496
TasI	AATT	5 cut(s)	669, 727, 738, 828, 933
TatI	WGTACW	1 cut(s)	614
TfiI	GAWTC	3 cut(s)	146, 293, 769
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	2 cut(s)	478, 681
TseFI	GTSAC	2 cut(s)	368, 1056
TseI	GCWGC	2 cut(s)	167, 641
Tsp45I	GTSAC	2 cut(s)	368, 1056
TspDTI	ATGAA	5 cut(s)	325, 354, 390, 570, 905
TspGWI	ACGGA	1 cut(s)	1075
TspRI	CASTG	2 cut(s)	478, 681
VneI	GTGCAC	1 cut(s)	441
VpaK11BI	GGWCC	1 cut(s)	995
XapI	RAATTY	3 cut(s)	669, 828, 933
XceI	RCATGY	3 cut(s)	90, 385, 615
XcmI	CCANNNNNNNNNTGG	2 cut(s)	281, 811
XspI	CTAG	3 cut(s)	27, 579, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.