Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003198

Physical Location & Seq

Genomic Coordinates Reverse (-)

25265246 .. 25266045

Gene Structure 800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0243900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTGCTACGTACAAAGTGGTCGATCAAAGAATCAAAACGTTTCAACATCATCATCATCACTGGCTTACTCAAATCGATTCAATACAATTCATATTCCAAGATCGATCTCTCCCAAGACTTGGAGATCTTTCAGAGCCACGCAAACATATATTCACAAATCCTCGTGTCCACCACCTCGTACGTCCTCCCCTCCATCACCAAAATTATATTTCCCTAAAACAAAAACAAAACTGGACAACAACAGCAACAGAAAACGTAAGGTGACGGTGAGTCTCCATTCTTTTAATTCGAATCCTCGCCGACCATTCCCAGATTGCATGCTTGGCAACTCAACACGTGGCCGCCGGTTCAAGACGTGGCGACATCCGATTCTTTGTCCGGGGCAGAGCACAACAGGGTGCGTGGCTATTGTGCCCTACGCCCTACAGAAGACTACAGAAGCAGAAGGAGCTAGGTTAGCACAGAGAGGTCGAGATCAAGGCCTTTATGTAGTTGTGTGTGTGCACGAGACACGTTGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

174

Amino Acids

19.78

Weight (kDa)

10.85

Isoelectric Point (pI)

63.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750 AT5G08750
fragaria_vesca	FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260 FvH4_1g25260
malus_domestica	MD15G1137500.v1.1
prunus_persica	Prupe.4G280400_v2.0.a1 Prupe.4G280400_v2.0.a1 Prupe.4G280400_v2.0.a1
pyrus_communis	pycom15g12390
rosa_chinensis	RchiOBHm_Chr2g0123181
rosa_laevigata	RLG00000018736
rosa_multiflora	Rmu_sc0005810.1_g000004
rosa_roxburghii	Rroxscaffold_2G00120850
rosa_rugosa	Rorug02G0243800 Rorug02G0243900 Rorug02G0244000 Rorug02G0244100
rosa_samantha	Rh2AG303200 Rh2BG311100 Rh2CG289700 Rh2DG327200
rosa_wichuraiana	Rw2G024150 Rw2G024240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	120
AciI	CCGC	1 cut(s)	343
AclI	AACGTT	1 cut(s)	39
AcoI	YGGCCR	1 cut(s)	340
AcvI	CACGTG	1 cut(s)	338
AfaI	GTAC	2 cut(s)	12, 181
AfiI	CCNNNNNNNGG	1 cut(s)	120
AflIII	ACRYGT	2 cut(s)	335, 512
AgsI	TTSAA	3 cut(s)	45, 82, 352
AhdI	GACNNNNNGTC	1 cut(s)	270
AjiI	CACGTC	1 cut(s)	357
AluBI	AGCT	1 cut(s)	452
AluI	AGCT	1 cut(s)	452
Alw21I	GWGCWC	2 cut(s)	392, 507
Alw26I	GTCTC	2 cut(s)	278, 503
Alw44I	GTGCAC	1 cut(s)	503
AoxI	GGCC	2 cut(s)	340, 481
ApaLI	GTGCAC	1 cut(s)	503
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	3 cut(s)	189, 274, 280
AsuII	TTCGAA	1 cut(s)	290
BaeGI	GKGCMC	2 cut(s)	417, 507
BauI	CACGAG	2 cut(s)	163, 506
BbrPI	CACGTG	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	437
Bbv12I	GWGCWC	2 cut(s)	392, 507
BccI	CCATC	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	278, 503
BfaI	CTAG	1 cut(s)	453
BfmI	CTRYAG	2 cut(s)	425, 435
BglII	AGATCT	1 cut(s)	125
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
Bme1390I	CCNGG	1 cut(s)	381
BmeRI	GACNNNNNGTC	1 cut(s)	270
BmgBI	CACGTC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	437
Bpu14I	TTCGAA	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	381
Bsa29I	ATCGAT	2 cut(s)	76, 104
BsaAI	YACGTR	2 cut(s)	10, 338
BsaJI	CCNNGG	1 cut(s)	380
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	66, 237
BseCI	ATCGAT	2 cut(s)	76, 104
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	364
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	66, 237
BseSI	GKGCMC	2 cut(s)	417, 507
BshFI	GGCC	2 cut(s)	342, 483
BshVI	ATCGAT	2 cut(s)	76, 104
BsiHKAI	GWGCWC	2 cut(s)	392, 507
BsiSI	CCGG	2 cut(s)	346, 380
BsiWI	CGTACG	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	2 cut(s)	278, 503
BsnI	GGCC	2 cut(s)	342, 483
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1286I	GDGCHC	3 cut(s)	392, 417, 507
Bsp143I	GATC	5 cut(s)	23, 101, 105, 125, 475
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	2 cut(s)	342, 483
BspDI	ATCGAT	2 cut(s)	76, 104
BspT104I	TTCGAA	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	2 cut(s)	66, 237
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	5 cut(s)	23, 101, 105, 125, 475
BssSI	CACGAG	2 cut(s)	163, 506
Bst2BI	CACGAG	2 cut(s)	163, 506
Bst4CI	ACNGT	1 cut(s)	268
BstBAI	YACGTR	2 cut(s)	10, 338
BstBI	TTCGAA	1 cut(s)	290
BstC8I	GCNNGC	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	364
BstKTI	GATC	5 cut(s)	26, 104, 108, 128, 478
BstMAI	GTCTC	2 cut(s)	278, 503
BstMBI	GATC	5 cut(s)	23, 101, 105, 125, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	324, 449, 458
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	1 cut(s)	379
BstSFI	CTRYAG	2 cut(s)	425, 435
BstSLI	GKGCMC	2 cut(s)	417, 507
BstSNI	TACGTA	1 cut(s)	10
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
Bsu15I	ATCGAT	2 cut(s)	76, 104
BsuRI	GGCC	2 cut(s)	342, 483
BsuTUI	ATCGAT	2 cut(s)	76, 104
BtrI	CACGTC	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	320
Cfr10I	RCCGGY	1 cut(s)	345
ClaI	ATCGAT	2 cut(s)	76, 104
Csp6I	GTAC	2 cut(s)	11, 180
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	6 cut(s)	65, 137, 342, 407, 452, 483
CviKI_1	RGCY	6 cut(s)	65, 137, 342, 407, 452, 483
CviQI	GTAC	2 cut(s)	11, 180
DpnI	GATC	5 cut(s)	25, 103, 107, 127, 477
DpnII	GATC	5 cut(s)	23, 101, 105, 125, 475
DriI	GACNNNNNGTC	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	340
Eam1105I	GACNNNNNGTC	1 cut(s)	270
Eco105I	TACGTA	1 cut(s)	10
Eco147I	AGGCCT	1 cut(s)	483
Eco72I	CACGTG	1 cut(s)	338
FaeI	CATG	1 cut(s)	322
FaiI	YATR	6 cut(s)	93, 148, 150, 208, 320, 489
FatI	CATG	1 cut(s)	318
Fnu4HI	GCNGC	1 cut(s)	343
FokI	GGATG	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	343
FspBI	CTAG	1 cut(s)	453
GluI	GCNGC	1 cut(s)	343
HaeIII	GGCC	2 cut(s)	342, 483
HapII	CCGG	2 cut(s)	346, 380
Hin1II	CATG	1 cut(s)	322
HinfI	GANTC	5 cut(s)	31, 78, 271, 292, 370
HpaII	CCGG	2 cut(s)	346, 380
HphI	GGTGA	3 cut(s)	189, 274, 280
Hpy166II	GTNNAC	2 cut(s)	170, 505
Hpy188I	TCNGA	3 cut(s)	134, 369, 524
Hpy188III	TCNNGA	2 cut(s)	352, 473
Hpy8I	GTNNAC	2 cut(s)	170, 505
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	7 cut(s)	9, 39, 182, 256, 337, 356, 514
HpyCH4V	TGCA	2 cut(s)	318, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	324, 449, 458
HpySE526I	ACGT	7 cut(s)	9, 39, 182, 256, 337, 356, 514
Hsp92II	CATG	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	23, 101, 105, 125, 475
LmnI	GCTCC	1 cut(s)	449
LpnPI	CCDG	6 cut(s)	47, 218, 324, 359, 381, 393
MaeI	CTAG	1 cut(s)	453
MaeII	ACGT	7 cut(s)	9, 39, 182, 256, 337, 356, 514
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	5 cut(s)	25, 103, 107, 127, 477
MboI	GATC	5 cut(s)	23, 101, 105, 125, 475
MboII	GAAGA	1 cut(s)	442
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	3 cut(s)	392, 417, 507
MluCI	AATT	3 cut(s)	87, 203, 286
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	6 cut(s)	172, 186, 196, 201, 306, 461
MseI	TTAA	1 cut(s)	285
MspI	CCGG	2 cut(s)	346, 380
MspR9I	CCNGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	3 cut(s)	324, 449, 458
NciI	CCSGG	1 cut(s)	381
NdeII	GATC	5 cut(s)	23, 101, 105, 125, 475
NlaIII	CATG	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	290
PaeI	GCATGC	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	483
PfeI	GAWTC	4 cut(s)	31, 78, 292, 370
Pfl23II	CGTACG	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	344
PleI	GAGTC	1 cut(s)	279
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	279
Ppu21I	YACGTR	2 cut(s)	10, 338
Psp1406I	AACGTT	1 cut(s)	39
PspCI	CACGTG	1 cut(s)	338
PspLI	CGTACG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	125
RsaI	GTAC	2 cut(s)	12, 181
RsaNI	GTAC	2 cut(s)	11, 180
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	5 cut(s)	23, 101, 105, 125, 475
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	3 cut(s)	392, 417, 507
SfcI	CTRYAG	2 cut(s)	425, 435
SfuI	TTCGAA	1 cut(s)	290
SnaBI	TACGTA	1 cut(s)	10
SphI	GCATGC	1 cut(s)	322
Sse9I	AATT	3 cut(s)	87, 203, 286
SseBI	AGGCCT	1 cut(s)	483
SsiI	CCGC	1 cut(s)	343
SspMI	CTAG	1 cut(s)	453
StuI	AGGCCT	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	7 cut(s)	12, 42, 185, 259, 340, 359, 517
TaqI	TCGA	5 cut(s)	22, 76, 104, 290, 472
TasI	AATT	3 cut(s)	87, 203, 286
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	4 cut(s)	31, 78, 292, 370
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	80
TspRI	CASTG	1 cut(s)	66
Van91I	CCANNNNNTGG	1 cut(s)	120
VneI	GTGCAC	1 cut(s)	503
XceI	RCATGY	1 cut(s)	322
XspI	CTAG	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.