MD15G1137500.v1.1

RING-variant domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003198
Physical Location & Seq
Forward (+)
10090325 .. 10099578
9254 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1137500.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGGGCAAGGAAAGCTTATCGGAAGCTAGCATTGTAGCCTGTGAGGACGATGGCTCACCTGGACATAGTGATGATATTGGTACTCAAGCACGCCATAGTCTTGACAACGAGGCCAGCTTGCTAACTTGTCGCGTGTGCCATTGTGCTGAATCGGACAAAAGGGGAGATGCAGCGTTAGGGTTTTTGGGTATTGTTCCTCCTTTACAAGAAGCATGTATAAGCAACGGGGAAGTAAAACCTCACAGTACGCTAGTCCCTAAAGATGCTGAATGTGATATTTCCGCCCAGAAAAATGTTGGAAAAGAATCTGGTTTTTTGGAGTTTATAAGCCCTGATGGAGAGGTTTTCATATGTAGTGCTGATTTAGAGACTGGTTCATGTCGCCATGAAGACATGTTAGTTGAGCTTGGTTGCTCTTGCAAAAATGACCTTGCTCTGGTACACTACGCTTGTGCACTCAAATGGTTTGTCAACCATGGATCCACTGTTTGTGAAATCTGCGGACGTGTTGCAAAAAATATCAGAACTTCAGACTTCAAAAAGGTTATGGTCTCCTTAAAGGAGTATGAAACATTGAGGGAAAGAACTGCTAGGGGGGAAGCCGATGCCGCACAGGTCAATACATGTGCAGGTATAGATCCTGACGCTGTAGCTGCTATCAGAAGGCAACGACTGAGTGAAATTTCGCTGTGGTTTACTCCATATGGTAATAGTAGCAATAACAATAATACAGATAGCAATTCTGTTGAAATTTCACAAGTTGCATCGGAACAACCTTTGAATCCTGTCATTGTTCCTGCTGAAAATCCTGCAACCAAATGGGCTGTGGAAGGTACTGGAATTCTGCTTGCTACAGGGCTTCTTACTGTTACTCTTGCATGGCTTATAGCTCCTCGTGTTGGGAAGAAAACTGCCAGAAGCGGTCTTCATATTCTCCTTGGAGGAATTTGTGCTTTGACAGTTGTGGTTTTCTTTCGCTTTTTTGTGCTCACCAGGATCAAGTATGGACCTGCACGCTACTGGGCAATATTATTCGTTTTCTGGTTTCTAGTTTTTGGTATCTGGGCGTCACGGACACATGGTTCCCATACAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

366

Amino Acids

39.56

Weight (kDa)

5.72

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 131 - 167 4.8e-06 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
Acc36I ACCTGC 2 cut(s) 620, 1018
AccII CGCG 1 cut(s) 132
AciI CCGC 4 cut(s) 282, 501, 609, 921
AclWI GGATC 4 cut(s) 474, 487, 632, 1004
AcsI RAATTY 4 cut(s) 681, 750, 840, 945
AcuI CTGAAG 1 cut(s) 513
AcyI GRCGYC 1 cut(s) 1067
AfaI GTAC 4 cut(s) 82, 247, 441, 835
AfiI CCNNNNNNNGG 2 cut(s) 436, 899
AflIII ACRYGT 3 cut(s) 393, 505, 623
AgsI TTSAA 3 cut(s) 538, 749, 781
AjiI CACGTC 1 cut(s) 506
AjnI CCWGG 2 cut(s) 58, 992
AloI GAACNNNNNNTCC 2 cut(s) 1066, 1098
AluBI AGCT 6 cut(s) 15, 26, 117, 406, 653, 890
AluI AGCT 6 cut(s) 15, 26, 117, 406, 653, 890
Alw21I GWGCWC 2 cut(s) 457, 990
Alw26I GTCTC 2 cut(s) 362, 556
Alw44I GTGCAC 1 cut(s) 453
AlwI GGATC 4 cut(s) 474, 487, 632, 1004
AoxI GGCC 1 cut(s) 111
ApaLI GTGCAC 1 cut(s) 453
ApeKI GCWGC 2 cut(s) 170, 653
ApoI RAATTY 4 cut(s) 681, 750, 840, 945
ArsI GACNNNNNNTTYG 2 cut(s) 453, 485
AspS9I GGNCC 1 cut(s) 1007
AsuHPI GGTGA 2 cut(s) 48, 982
AsuNHI GCTAGC 1 cut(s) 26
AvaII GGWCC 1 cut(s) 1007
BaeGI GKGCMC 1 cut(s) 457
BamHI GGATCC 1 cut(s) 479
BauI CACGAG 1 cut(s) 894
BbsI GAAGAC 2 cut(s) 396, 917
Bbv12I GWGCWC 2 cut(s) 457, 990
BbvI GCAGC 2 cut(s) 182, 640
BccI CCATC 2 cut(s) 44, 329
BciT130I CCWGG 2 cut(s) 60, 994
BcoDI GTCTC 2 cut(s) 362, 556
BfaI CTAG 4 cut(s) 27, 251, 591, 1049
BfmI CTRYAG 2 cut(s) 648, 852
BfuAI ACCTGC 2 cut(s) 620, 1018
BisI GCNGC 3 cut(s) 171, 609, 654
BlsI GCNGC 3 cut(s) 172, 610, 655
Bme1390I CCNGG 2 cut(s) 60, 994
Bme18I GGWCC 1 cut(s) 1007
BmgBI CACGTC 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 1007
BmiI GGNNCC 2 cut(s) 481, 1084
BmrFI CCNGG 2 cut(s) 60, 994
BmrI ACTGGG 1 cut(s) 1030
BmsI GCATC 4 cut(s) 157, 253, 595, 773
BmtI GCTAGC 1 cut(s) 30
BmuI ACTGGG 1 cut(s) 1030
BpiI GAAGAC 2 cut(s) 396, 917
BpuEI CTTGAG 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 1067
BsaI GGTCTC 1 cut(s) 556
BsaJI CCNNGG 2 cut(s) 475, 937
Bsc4I CCNNNNNNNGG 2 cut(s) 436, 899
Bse1I ACTGG 3 cut(s) 376, 841, 1025
BseBI CCWGG 2 cut(s) 60, 994
BseDI CCNNGG 2 cut(s) 475, 937
BseLI CCNNNNNNNGG 2 cut(s) 436, 899
BseMII CTCAG 1 cut(s) 665
BseNI ACTGG 3 cut(s) 376, 841, 1025
BseRI GAGGAG 1 cut(s) 882
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 2 cut(s) 182, 640
BsgI GTGCAG 2 cut(s) 648, 996
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 113
BsiHKAI GWGCWC 2 cut(s) 457, 990
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 436, 899
BsmAI GTCTC 2 cut(s) 362, 556
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 113
Bso31I GGTCTC 1 cut(s) 556
Bsp1286I GDGCHC 2 cut(s) 457, 990
Bsp143I GATC 3 cut(s) 479, 637, 996
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 4 cut(s) 282, 501, 609, 921
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 666
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 481, 1084
BspMI ACCTGC 2 cut(s) 620, 1018
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 4 cut(s) 474, 487, 632, 1004
BspTNI GGTCTC 1 cut(s) 556
BsrI ACTGG 3 cut(s) 376, 841, 1025
BssECI CCNNGG 2 cut(s) 475, 937
BssMI GATC 3 cut(s) 479, 637, 996
BssNI GRCGYC 1 cut(s) 1067
BssSI CACGAG 1 cut(s) 894
BssT1I CCWWGG 2 cut(s) 475, 937
Bst2BI CACGAG 1 cut(s) 894
Bst2UI CCWGG 2 cut(s) 60, 994
Bst4CI ACNGT 4 cut(s) 245, 487, 868, 961
BstACI GRCGYC 1 cut(s) 1067
BstC8I GCNNGC 6 cut(s) 28, 91, 115, 119, 849, 1015
BstDEI CTNAG 1 cut(s) 674
BstDSI CCRYGG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 132
BstKTI GATC 3 cut(s) 482, 640, 999
BstMAI GTCTC 2 cut(s) 362, 556
BstMBI GATC 3 cut(s) 479, 637, 996
BstMWI GCNNNNNNNGC 3 cut(s) 12, 608, 653
BstNI CCWGG 2 cut(s) 60, 994
BstNSI RCATGY 3 cut(s) 216, 397, 627
BstSCI CCNGG 2 cut(s) 58, 992
BstSFI CTRYAG 2 cut(s) 648, 852
BstSLI GKGCMC 1 cut(s) 457
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 182, 640
BstV2I GAAGAC 2 cut(s) 396, 917
BstX2I RGATCY 2 cut(s) 479, 637
BstYI RGATCY 2 cut(s) 479, 637
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 475
BtrI CACGTC 1 cut(s) 506
BtsIMutI CAGTG 1 cut(s) 483
BveI ACCTGC 2 cut(s) 620, 1018
Cac8I GCNNGC 6 cut(s) 28, 91, 115, 119, 849, 1015
Cfr13I GGNCC 1 cut(s) 1007
CseI GACGC 2 cut(s) 653, 1056
Csp6I GTAC 4 cut(s) 81, 246, 440, 834
CviAII CATG 8 cut(s) 213, 378, 386, 394, 476, 624, 879, 1079
CviQI GTAC 4 cut(s) 81, 246, 440, 834
DdeI CTNAG 1 cut(s) 674
DpnI GATC 3 cut(s) 481, 639, 998
DpnII GATC 3 cut(s) 479, 637, 996
EciI GGCGGA 1 cut(s) 271
Eco130I CCWWGG 2 cut(s) 475, 937
Eco31I GGTCTC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 1007
Eco57I CTGAAG 1 cut(s) 513
EcoRI GAATTC 1 cut(s) 840
EcoRII CCWGG 2 cut(s) 58, 992
EcoT14I CCWWGG 2 cut(s) 475, 937
ErhI CCWWGG 2 cut(s) 475, 937
FaeI CATG 8 cut(s) 216, 381, 389, 397, 479, 627, 882, 1082
FalI AAGNNNNNCTT 1 cut(s) 31
FaqI GGGAC 1 cut(s) 239
FatI CATG 8 cut(s) 212, 377, 385, 393, 475, 623, 878, 1078
FauNDI CATATG 2 cut(s) 350, 703
Fnu4HI GCNGC 3 cut(s) 171, 609, 654
Fsp4HI GCNGC 3 cut(s) 171, 609, 654
FspBI CTAG 4 cut(s) 27, 251, 591, 1049
GluI GCNGC 3 cut(s) 171, 609, 654
HaeIII GGCC 1 cut(s) 113
HgaI GACGC 2 cut(s) 653, 1056
Hin1I GRCGYC 1 cut(s) 1067
Hin1II CATG 8 cut(s) 216, 381, 389, 397, 479, 627, 882, 1082
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 3 cut(s) 149, 305, 781
HphI GGTGA 2 cut(s) 48, 982
Hpy166II GTNNAC 4 cut(s) 442, 455, 472, 696
Hpy188I TCNGA 6 cut(s) 22, 154, 524, 532, 662, 769
Hpy188III TCNNGA 2 cut(s) 101, 641
Hpy8I GTNNAC 4 cut(s) 442, 455, 472, 696
HpyAV CCTTC 2 cut(s) 657, 824
HpyCH4III ACNGT 4 cut(s) 245, 487, 868, 961
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 9 cut(s) 170, 420, 455, 512, 629, 764, 812, 878, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 608, 653
HpyF3I CTNAG 1 cut(s) 674
HpySE526I ACGT 1 cut(s) 505
Hsp92I GRCGYC 1 cut(s) 1067
Hsp92II CATG 8 cut(s) 216, 381, 389, 397, 479, 627, 882, 1082
Kzo9I GATC 3 cut(s) 479, 637, 996
LmnI GCTCC 1 cut(s) 895
Lsp1109I GCAGC 2 cut(s) 182, 640
LweI GCATC 4 cut(s) 157, 253, 595, 773
MaeI CTAG 4 cut(s) 27, 251, 591, 1049
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 2 cut(s) 868, 1068
MalI GATC 3 cut(s) 481, 639, 998
MboI GATC 3 cut(s) 479, 637, 996
MboII GAAGA 3 cut(s) 401, 916, 917
MflI RGATCY 2 cut(s) 479, 637
MhlI GDGCHC 2 cut(s) 457, 990
MluCI AATT 5 cut(s) 681, 739, 750, 840, 945
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 8 cut(s) 37, 103, 207, 249, 334, 570, 903, 935
MseI TTAA 1 cut(s) 557
MslI CAYNNNNRTG 2 cut(s) 69, 460
MspR9I CCNGG 2 cut(s) 60, 994
MvaI CCWGG 2 cut(s) 60, 994
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 12, 608, 653
NcoI CCATGG 1 cut(s) 475
NdeI CATATG 2 cut(s) 350, 703
NdeII GATC 3 cut(s) 479, 637, 996
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 8 cut(s) 216, 381, 389, 397, 479, 627, 882, 1082
NlaIV GGNNCC 2 cut(s) 481, 1084
NmuCI GTSAC 1 cut(s) 1068
NspI RCATGY 3 cut(s) 216, 397, 627
PciI ACATGT 2 cut(s) 393, 623
PfeI GAWTC 3 cut(s) 149, 305, 781
PkrI GCNGC 3 cut(s) 172, 610, 655
PscI ACATGT 2 cut(s) 393, 623
PsiI TTATAA 1 cut(s) 326
Psp6I CCWGG 2 cut(s) 58, 992
PspGI CCWGG 2 cut(s) 58, 992
PspN4I GGNNCC 2 cut(s) 481, 1084
PspPI GGNCC 1 cut(s) 1007
PsuI RGATCY 2 cut(s) 479, 637
RsaI GTAC 4 cut(s) 82, 247, 441, 835
RsaNI GTAC 4 cut(s) 81, 246, 440, 834
RseI CAYNNNNRTG 2 cut(s) 69, 460
SaqAI TTAA 1 cut(s) 557
SatI GCNGC 3 cut(s) 171, 609, 654
Sau3AI GATC 3 cut(s) 479, 637, 996
Sau96I GGNCC 1 cut(s) 1007
ScrFI CCNGG 2 cut(s) 60, 994
SduI GDGCHC 2 cut(s) 457, 990
SfaNI GCATC 4 cut(s) 157, 253, 595, 773
SfcI CTRYAG 2 cut(s) 648, 852
SinI GGWCC 1 cut(s) 1007
SmiMI CAYNNNNRTG 2 cut(s) 69, 460
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
Sse9I AATT 5 cut(s) 681, 739, 750, 840, 945
SsiI CCGC 4 cut(s) 282, 501, 609, 921
SspI AATATT 1 cut(s) 1029
SspMI CTAG 4 cut(s) 27, 251, 591, 1049
StyD4I CCNGG 2 cut(s) 58, 992
StyI CCWWGG 2 cut(s) 475, 937
TaaI ACNGT 4 cut(s) 245, 487, 868, 961
TaiI ACGT 1 cut(s) 508
TasI AATT 5 cut(s) 681, 739, 750, 840, 945
TauI GCSGC 1 cut(s) 611
TfiI GAWTC 3 cut(s) 149, 305, 781
Tru1I TTAA 1 cut(s) 557
Tru9I TTAA 1 cut(s) 557
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 1 cut(s) 1068
TseI GCWGC 2 cut(s) 170, 653
Tsp45I GTSAC 1 cut(s) 1068
TspDTI ATGAA 5 cut(s) 337, 366, 402, 582, 917
TspGWI ACGGA 1 cut(s) 1087
TspRI CASTG 1 cut(s) 490
VneI GTGCAC 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 1007
XapI RAATTY 4 cut(s) 681, 750, 840, 945
XceI RCATGY 3 cut(s) 216, 397, 627
XcmI CCANNNNNNNNNTGG 2 cut(s) 293, 823
XspI CTAG 4 cut(s) 27, 251, 591, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.