Rorug02G0244000

RING-variant domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003198
Physical Location & Seq
Reverse (-)
25304496 .. 25305335
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0244000.1

Sequence Viewer

Length: 759 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCCACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGCAGGCGGAGCAGTACCAGGTGGACTCCCACTACAGATCAGATAAGAATCCTCAAGGAGATCGAGGTCAAGAACGTCTTTTATTGGTTCAAAAACCACAAGGCTCGGGAGAGGCAGAAGAAGAGGTTCATTTTGGATGTTCATGTGCCCATGCAAAGATCAAGGCTTGTTGGTAATGGTAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACATGAACAACAAGTACTCTAACATTTGTCAGGGGGTTTCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCCATGCACGGTGAGAACATTTTTGGCAACATGAAGATTACTTCCGAGGGAGGTGGCGACTACGGCTACTACTTTGGTGGCTGGGGCGGCTACAACGGTGGCTCTCGCACTTCCCTTGAGCTCAGCCTCAACTCCTACGGCTTGACCCTATTTTCCCGCGAAGGTGTTTTCTCTGCTAGAGAAAAGACAACTCACACTTCCCTTGAGCTCAGCCTCAACTCCTACGGCTCGACCTTATTTTCCCGCGAATGTGTTTTCTCTGCGAGAGAAAAGACAAAGCTCAAAAAAATTTCCGGAGCCGCTGACTCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

252

Amino Acids

27.84

Weight (kDa)

9.26

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 260
AccII CGCG 2 cut(s) 603, 690
AccIII TCCGGA 1 cut(s) 737
AciI CCGC 5 cut(s) 82, 531, 601, 688, 744
AclWI GGATC 2 cut(s) 288, 415
AcsI RAATTY 1 cut(s) 732
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 3 cut(s) 91, 262, 308
AfiI CCNNNNNNNGG 1 cut(s) 452
AgsI TTSAA 2 cut(s) 166, 428
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 5 cut(s) 359, 565, 652, 724, 755
AluI AGCT 5 cut(s) 359, 565, 652, 724, 755
Alw21I GWGCWC 2 cut(s) 567, 654
AlwI GGATC 2 cut(s) 288, 415
Ama87I CYCGRG 1 cut(s) 180
Aor13HI TCCGGA 1 cut(s) 737
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 732
Asp700I GAANNNNTTC 2 cut(s) 200, 432
Asp718I GGTACC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 467
AvaI CYCGRG 1 cut(s) 180
AxyI CCTNAGG 1 cut(s) 276
BaeGI GKGCMC 1 cut(s) 225
BanI GGYRCC 1 cut(s) 260
BanII GRGCYC 2 cut(s) 567, 654
Bbv12I GWGCWC 2 cut(s) 567, 654
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 26, 379
BceAI ACGGC 3 cut(s) 523, 598, 685
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 1 cut(s) 55
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 3 cut(s) 51, 532, 744
BlpI GCTNAGC 2 cut(s) 566, 653
BlsI GCNGC 3 cut(s) 52, 533, 745
BmcAI AGTACT 1 cut(s) 308
Bme1390I CCNGG 2 cut(s) 55, 94
BmeT110I CYCGRG 1 cut(s) 180
BmiI GGNNCC 3 cut(s) 6, 262, 742
BmrFI CCNGG 2 cut(s) 55, 94
BmsI GCATC 1 cut(s) 347
Bpu1102I GCTNAGC 2 cut(s) 566, 653
BpuEI CTTGAG 3 cut(s) 113, 581, 668
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 27, 489
BsaWI WCCGGW 1 cut(s) 737
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse21I CCTNAGG 1 cut(s) 276
Bse8I GATNNNNATC 1 cut(s) 122
BseAI TCCGGA 1 cut(s) 737
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 2 cut(s) 27, 489
BseGI GGATG 2 cut(s) 37, 217
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 3 cut(s) 267, 580, 667
BseSI GKGCMC 1 cut(s) 225
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 2 cut(s) 15, 525
Bsh1236I CGCG 2 cut(s) 603, 690
BshNI GGYRCC 1 cut(s) 260
BsiHKAI GWGCWC 2 cut(s) 567, 654
BsiHKCI CYCGRG 1 cut(s) 180
BsiSI CCGG 2 cut(s) 54, 738
BslI CCNNNNNNNGG 1 cut(s) 452
BsoBI CYCGRG 1 cut(s) 180
Bsp1286I GDGCHC 3 cut(s) 225, 567, 654
Bsp13I TCCGGA 1 cut(s) 737
Bsp143I GATC 5 cut(s) 112, 135, 233, 280, 407
Bsp1720I GCTNAGC 2 cut(s) 566, 653
BspACI CCGC 5 cut(s) 82, 531, 601, 688, 744
BspCNI CTCAG 3 cut(s) 268, 579, 666
BspEI TCCGGA 1 cut(s) 737
BspFNI CGCG 2 cut(s) 603, 690
BspLI GGNNCC 3 cut(s) 6, 262, 742
BspPI GGATC 2 cut(s) 288, 415
BspT107I GGYRCC 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 27, 489
BssMI GATC 5 cut(s) 112, 135, 233, 280, 407
Bst2UI CCWGG 1 cut(s) 94
Bst4CI ACNGT 2 cut(s) 455, 542
Bst6I CTCTTC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 5 cut(s) 276, 566, 653, 751, 756
BstF5I GGATG 2 cut(s) 37, 217
BstFNI CGCG 2 cut(s) 603, 690
BstKTI GATC 5 cut(s) 115, 138, 236, 283, 410
BstMBI GATC 5 cut(s) 112, 135, 233, 280, 407
BstMWI GCNNNNNNNGC 6 cut(s) 79, 84, 356, 507, 531, 752
BstNI CCWGG 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 53, 92
BstSFI CTRYAG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 225
BstUI CGCG 2 cut(s) 603, 690
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 407
BstYI RGATCY 1 cut(s) 407
Bsu36I CCTNAGG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 37, 217
Cac8I GCNNGC 1 cut(s) 80
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 3 cut(s) 90, 261, 307
CviAII CATG 7 cut(s) 70, 218, 226, 295, 418, 448, 475
CviQI GTAC 3 cut(s) 90, 261, 307
DdeI CTNAG 5 cut(s) 276, 566, 653, 751, 756
DpnI GATC 5 cut(s) 114, 137, 235, 282, 409
DpnII GATC 5 cut(s) 112, 135, 233, 280, 407
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 2 cut(s) 565, 652
Eco24I GRGCYC 2 cut(s) 567, 654
Eco53kI GAGCTC 2 cut(s) 565, 652
Eco57I CTGAAG 1 cut(s) 339
Eco81I CCTNAGG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 180
EcoICRI GAGCTC 2 cut(s) 565, 652
EcoRII CCWGG 1 cut(s) 92
EcoT38I GRGCYC 2 cut(s) 567, 654
FaeI CATG 7 cut(s) 73, 221, 229, 298, 421, 451, 478
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FatI CATG 7 cut(s) 69, 217, 225, 294, 417, 447, 474
FauI CCCGC 2 cut(s) 608, 695
Fnu4HI GCNGC 3 cut(s) 51, 532, 744
FokI GGATG 2 cut(s) 44, 224
FriOI GRGCYC 2 cut(s) 567, 654
Fsp4HI GCNGC 3 cut(s) 51, 532, 744
FspBI CTAG 1 cut(s) 621
GluI GCNGC 3 cut(s) 51, 532, 744
GsaI CCCAGC 2 cut(s) 19, 529
HapII CCGG 2 cut(s) 54, 738
Hin1II CATG 7 cut(s) 73, 221, 229, 298, 421, 451, 478
HinfI GANTC 3 cut(s) 100, 123, 749
HpaII CCGG 2 cut(s) 54, 738
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 2 cut(s) 117, 490
Hpy188III TCNNGA 3 cut(s) 145, 182, 738
Hpy8I GTNNAC 1 cut(s) 99
HpyAV CCTTC 2 cut(s) 443, 599
HpyCH4III ACNGT 2 cut(s) 455, 542
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 78, 229, 338, 451
HpyF10VI GCNNNNNNNGC 6 cut(s) 79, 84, 356, 507, 531, 752
HpyF3I CTNAG 5 cut(s) 276, 566, 653, 751, 756
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 7 cut(s) 73, 221, 229, 298, 421, 451, 478
Kpn2I TCCGGA 1 cut(s) 737
KpnI GGTACC 1 cut(s) 264
Kzo9I GATC 5 cut(s) 112, 135, 233, 280, 407
LmnI GCTCC 2 cut(s) 84, 740
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 347
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 1 cut(s) 621
MaeII ACGT 1 cut(s) 150
MalI GATC 5 cut(s) 114, 137, 235, 282, 409
MboI GATC 5 cut(s) 112, 135, 233, 280, 407
MboII GAAGA 5 cut(s) 205, 208, 324, 345, 490
MfeI CAATTG 1 cut(s) 265
MflI RGATCY 1 cut(s) 407
MhlI GDGCHC 3 cut(s) 225, 567, 654
MluCI AATT 2 cut(s) 265, 732
MlyI GAGTC 2 cut(s) 94, 743
MroI TCCGGA 1 cut(s) 737
MroXI GAANNNNTTC 2 cut(s) 200, 432
MseI TTAA 2 cut(s) 291, 375
MspA1I CMGCKG 2 cut(s) 359, 746
MspI CCGG 2 cut(s) 54, 738
MspR9I CCNGG 2 cut(s) 55, 94
MunI CAATTG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 2 cut(s) 603, 690
MwoI GCNNNNNNNGC 6 cut(s) 79, 84, 356, 507, 531, 752
NciI CCSGG 1 cut(s) 55
NdeII GATC 5 cut(s) 112, 135, 233, 280, 407
NlaIII CATG 7 cut(s) 73, 221, 229, 298, 421, 451, 478
NlaIV GGNNCC 3 cut(s) 6, 262, 742
NspI RCATGY 1 cut(s) 73
PdmI GAANNNNTTC 2 cut(s) 200, 432
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 3 cut(s) 52, 533, 745
PleI GAGTC 2 cut(s) 94, 743
PpsI GAGTC 2 cut(s) 94, 743
Psp124BI GAGCTC 2 cut(s) 567, 654
Psp6I CCWGG 1 cut(s) 92
PspFI CCCAGC 2 cut(s) 15, 525
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 3 cut(s) 6, 262, 742
PsrI GAACNNNNNNTAC 2 cut(s) 290, 322
PsuI RGATCY 1 cut(s) 407
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 3 cut(s) 91, 262, 308
RsaNI GTAC 3 cut(s) 90, 261, 307
SacI GAGCTC 2 cut(s) 567, 654
SaqAI TTAA 2 cut(s) 291, 375
SatI GCNGC 3 cut(s) 51, 532, 744
Sau3AI GATC 5 cut(s) 112, 135, 233, 280, 407
ScaI AGTACT 1 cut(s) 308
SchI GAGTC 2 cut(s) 94, 743
ScrFI CCNGG 2 cut(s) 55, 94
SduI GDGCHC 3 cut(s) 225, 567, 654
SexAI ACCWGGT 1 cut(s) 92
SfaNI GCATC 1 cut(s) 347
SfcI CTRYAG 1 cut(s) 108
SmlI CTYRAG 3 cut(s) 128, 560, 647
SmoI CTYRAG 3 cut(s) 128, 560, 647
Sse9I AATT 2 cut(s) 265, 732
SsiI CCGC 5 cut(s) 82, 531, 601, 688, 744
SspMI CTAG 1 cut(s) 621
SstI GAGCTC 2 cut(s) 567, 654
StyD4I CCNGG 2 cut(s) 53, 92
TaaI ACNGT 2 cut(s) 455, 542
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 138, 674
TasI AATT 2 cut(s) 265, 732
TatI WGTACW 1 cut(s) 306
TauI GCSGC 2 cut(s) 534, 746
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 2 cut(s) 291, 375
Tru9I TTAA 2 cut(s) 291, 375
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 5 cut(s) 193, 206, 311, 428, 491
XapI RAATTY 1 cut(s) 732
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 2 cut(s) 200, 432
XspI CTAG 1 cut(s) 621
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.