Rorug02G0244100

RING-variant domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003198
Physical Location & Seq
Reverse (-)
25339544 .. 25341422
1879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0244100.1

Sequence Viewer

Length: 1074 bp
ATGGCAGCAGCTATAGATATTTACAGTAGCAGCAGCTCAATGTCACCAGATTTATCAGAGGAGCTTATGAGAGCACTTATGCCTTATATGAAAAGTGCTTCTTCAACCTCTTCTATTTCTCCACCAACATCTCCTTCCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTACACTCCATTTTACTCTTCTTCTTATCCCATTTTGTACCCTGACTTTTGCTCAAACACCCAAATGTTCCCACAAGTGGGTTTTGAGCAAACAGGTTCACTGGGGCTTAACCAACTCACCCCATCTCAAATTCGTCAAATCCAAACCCAAATGATACTCCAACAACAACAGAAGCAGCAAATTGCAGCTCTAGCTCCACTACCAAACCAATATCACCACCAACACTCTCACACCCTCAACTTCCTTGGCCCAAAAGCAATCCCAATGAAGCAATCTGGTACTCCCAAGCCCACAAAGCTCTACAGGGGAGTGAGGCAGAGGCATTGGGGAAAATGGGTTGCTGAGATTAGACTCCCCAAGAACCGAACTCGCCTCTGGCTTGGCACATTCGAAACAGCCGAAGAAGCAGCTTTAGCTTATGATAAAGCTGCTTATAAGCTCAGGGGAGACTTTGCCAGGCTCAATTTCCCTCATCTTAAGCATCAAGGAGCTCATATCACTGGAGATTTTGGCAATTACAAGCCTCTTCCTTCCGCAGTTGACGCCAAGCTCCAAGCAATTTGCGAGAGCTTGGCTGTTAATTCGCCGAAACAGGGCAAAACAGAGGAGCTCTGTTCTGAAACAGAGACAAAGCCAGTGATTTCAGCTCCAAAGATGGTCTTTGATGATTCATTGAGTACAGATTTGAAAAGAGAATGGGACTCTCCTAAATTGGAGGCCATTTCATGGTCATCTTCACCCTCTCGATCCTGCGATGAGTCCTCAGCCGGGTCATCTTCACCGGAATCTGACATTACATTCTTGGATTTCTCAGATTCTCAGTGGGATGAGAATGATACTTTCGGATTGGAGAAGTACCCTTCAGTGGAGATTGATTGGTCTGCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

357

Amino Acids

39.45

Weight (kDa)

5.93

Isoelectric Point (pI)

66.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 161 - 210 3.2e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
AccB7I CCANNNNNTGG 1 cut(s) 909
AciI CCGC 1 cut(s) 717
AclWI GGATC 1 cut(s) 924
AcsI RAATTY 1 cut(s) 312
AcuI CTGAAG 1 cut(s) 1029
AcyI GRCGYC 1 cut(s) 726
AfaI GTAC 4 cut(s) 221, 463, 862, 1040
AfiI CCNNNNNNNGG 6 cut(s) 259, 260, 776, 909, 951, 1048
AflII CTTAAG 1 cut(s) 659
AgsI TTSAA 2 cut(s) 105, 871
AjnI CCWGG 1 cut(s) 638
AjuI GAANNNNNNNTTGG 2 cut(s) 118, 150
Alw21I GWGCWC 3 cut(s) 76, 676, 795
Alw26I GTCTC 2 cut(s) 624, 803
AlwI GGATC 1 cut(s) 924
AoxI GGCC 2 cut(s) 430, 900
ApeKI GCWGC 8 cut(s) 5, 8, 30, 33, 358, 368, 590, 611
ApoI RAATTY 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 952
AsuHPI GGTGA 5 cut(s) 36, 292, 389, 912, 954
AsuII TTCGAA 1 cut(s) 573
BanII GRGCYC 2 cut(s) 676, 795
Bbv12I GWGCWC 3 cut(s) 76, 676, 795
BbvCI CCTCAGC 1 cut(s) 946
BbvI GCAGC 8 cut(s) 17, 20, 42, 45, 370, 380, 598, 602
BccI CCATC 2 cut(s) 313, 832
BciT130I CCWGG 1 cut(s) 640
BcnI CCSGG 1 cut(s) 952
BcoDI GTCTC 2 cut(s) 624, 803
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 2 cut(s) 12, 484
BfrI CTTAAG 1 cut(s) 659
BisI GCNGC 8 cut(s) 6, 9, 31, 34, 359, 369, 591, 612
BlsI GCNGC 8 cut(s) 7, 10, 32, 35, 360, 370, 592, 613
Bme1390I CCNGG 2 cut(s) 640, 952
BmgT120I GGNCC 1 cut(s) 431
BmrFI CCNGG 2 cut(s) 640, 952
BmrI ACTGGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 673
BmuI ACTGGG 1 cut(s) 293
BpmI CTGGAG 1 cut(s) 705
Bpu10I CCTNAGC 2 cut(s) 623, 946
Bpu14I TTCGAA 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 952
BsaHI GRCGYC 1 cut(s) 726
BsaJI CCNNGG 1 cut(s) 427
BsaWI WCCGGW 1 cut(s) 964
Bsc4I CCNNNNNNNGG 6 cut(s) 259, 260, 776, 909, 951, 1048
Bse1I ACTGG 3 cut(s) 288, 688, 818
BseBI CCWGG 1 cut(s) 640
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 1 cut(s) 1015
BseLI CCNNNNNNNGG 6 cut(s) 259, 260, 776, 909, 951, 1048
BseMII CTCAG 5 cut(s) 516, 637, 960, 1008, 1016
BseNI ACTGG 3 cut(s) 288, 688, 818
BseRI GAGGAG 2 cut(s) 74, 803
BseXI GCAGC 8 cut(s) 17, 20, 42, 45, 370, 380, 598, 602
BshFI GGCC 2 cut(s) 432, 902
BsiHKAI GWGCWC 3 cut(s) 76, 676, 795
BsiSI CCGG 2 cut(s) 951, 965
BslFI GGGAC 1 cut(s) 896
BslI CCNNNNNNNGG 6 cut(s) 259, 260, 776, 909, 951, 1048
BsmAI GTCTC 2 cut(s) 624, 803
BsmFI GGGAC 1 cut(s) 896
BsnI GGCC 2 cut(s) 432, 902
Bsp119I TTCGAA 1 cut(s) 573
Bsp1286I GDGCHC 3 cut(s) 76, 676, 795
Bsp143I GATC 1 cut(s) 929
BspACI CCGC 1 cut(s) 717
BspANI GGCC 2 cut(s) 432, 902
BspCNI CTCAG 5 cut(s) 517, 636, 959, 1007, 1015
BspPI GGATC 1 cut(s) 924
BspT104I TTCGAA 1 cut(s) 573
BspTI CTTAAG 1 cut(s) 659
BsrI ACTGG 3 cut(s) 288, 688, 818
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 1 cut(s) 929
BssNI GRCGYC 1 cut(s) 726
BssT1I CCWWGG 1 cut(s) 427
Bst2UI CCWGG 1 cut(s) 640
Bst4CI ACNGT 1 cut(s) 26
Bst6I CTCTTC 3 cut(s) 115, 205, 714
BstACI GRCGYC 1 cut(s) 726
BstAFI CTTAAG 1 cut(s) 659
BstBI TTCGAA 1 cut(s) 573
BstDEI CTNAG 5 cut(s) 525, 623, 946, 994, 1002
BstF5I GGATG 1 cut(s) 1015
BstKTI GATC 1 cut(s) 932
BstMAI GTCTC 2 cut(s) 624, 803
BstMBI GATC 1 cut(s) 929
BstMWI GCNNNNNNNGC 5 cut(s) 374, 478, 587, 596, 725
BstNI CCWGG 1 cut(s) 640
BstSCI CCNGG 2 cut(s) 638, 950
BstSFI CTRYAG 2 cut(s) 12, 484
BstV1I GCAGC 8 cut(s) 17, 20, 42, 45, 370, 380, 598, 602
BsuRI GGCC 2 cut(s) 432, 902
BtgZI GCGATG 1 cut(s) 951
BtsCI GGATG 1 cut(s) 1015
BtsIMutI CAGTG 5 cut(s) 281, 681, 825, 1010, 1053
Cfr13I GGNCC 1 cut(s) 431
CseI GACGC 1 cut(s) 734
Csp6I GTAC 4 cut(s) 220, 462, 861, 1039
CviAII CATG 1 cut(s) 909
CviQI GTAC 4 cut(s) 220, 462, 861, 1039
DdeI CTNAG 5 cut(s) 525, 623, 946, 994, 1002
DpnI GATC 1 cut(s) 931
DpnII GATC 1 cut(s) 929
Eam1104I CTCTTC 3 cut(s) 115, 205, 714
EarI CTCTTC 3 cut(s) 115, 205, 714
Ecl136II GAGCTC 2 cut(s) 674, 793
Eco130I CCWWGG 1 cut(s) 427
Eco24I GRGCYC 2 cut(s) 676, 795
Eco53kI GAGCTC 2 cut(s) 674, 793
Eco57I CTGAAG 1 cut(s) 1029
EcoICRI GAGCTC 2 cut(s) 674, 793
EcoRII CCWGG 1 cut(s) 638
EcoT14I CCWWGG 1 cut(s) 427
EcoT38I GRGCYC 2 cut(s) 676, 795
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 1 cut(s) 912
FaiI YATR 9 cut(s) 14, 68, 80, 87, 89, 603, 618, 678, 910
FalI AAGNNNNNCTT 4 cut(s) 85, 117, 827, 859
FaqI GGGAC 1 cut(s) 896
FatI CATG 1 cut(s) 908
Fnu4HI GCNGC 8 cut(s) 6, 9, 31, 34, 359, 369, 591, 612
FokI GGATG 1 cut(s) 1022
FriOI GRGCYC 2 cut(s) 676, 795
Fsp4HI GCNGC 8 cut(s) 6, 9, 31, 34, 359, 369, 591, 612
FspBI CTAG 1 cut(s) 374
GluI GCNGC 8 cut(s) 6, 9, 31, 34, 359, 369, 591, 612
GsuI CTGGAG 1 cut(s) 705
HaeIII GGCC 2 cut(s) 432, 902
HapII CCGG 2 cut(s) 951, 965
HgaI GACGC 1 cut(s) 734
Hin1I GRCGYC 1 cut(s) 726
Hin1II CATG 1 cut(s) 912
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HinfI GANTC 6 cut(s) 534, 851, 884, 941, 968, 998
HpaII CCGG 2 cut(s) 951, 965
HphI GGTGA 5 cut(s) 36, 292, 389, 912, 954
Hpy166II GTNNAC 2 cut(s) 281, 724
Hpy188I TCNGA 5 cut(s) 58, 802, 973, 997, 1028
Hpy188III TCNNGA 1 cut(s) 927
Hpy8I GTNNAC 2 cut(s) 281, 724
HpyAV CCTTC 3 cut(s) 144, 723, 1053
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 5 cut(s) 374, 478, 587, 596, 725
HpyF3I CTNAG 5 cut(s) 525, 623, 946, 994, 1002
Hsp92I GRCGYC 1 cut(s) 726
Hsp92II CATG 1 cut(s) 912
Kzo9I GATC 1 cut(s) 929
LmnI GCTCC 6 cut(s) 61, 382, 671, 738, 790, 835
Lsp1109I GCAGC 8 cut(s) 17, 20, 42, 45, 370, 380, 598, 602
LweI GCATC 1 cut(s) 673
MaeI CTAG 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 42
MalI GATC 1 cut(s) 931
MboI GATC 1 cut(s) 929
MhlI GDGCHC 3 cut(s) 76, 676, 795
MluCI AATT 7 cut(s) 312, 363, 646, 697, 741, 763, 893
MlyI GAGTC 3 cut(s) 528, 878, 950
MmeI TCCRAC 1 cut(s) 367
MseI TTAA 4 cut(s) 291, 660, 762, 1072
MslI CAYNNNNRTG 1 cut(s) 245
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 2 cut(s) 951, 965
MspR9I CCNGG 2 cut(s) 640, 952
MvaI CCWGG 1 cut(s) 640
MwoI GCNNNNNNNGC 5 cut(s) 374, 478, 587, 596, 725
NciI CCSGG 1 cut(s) 952
NdeII GATC 1 cut(s) 929
NlaIII CATG 1 cut(s) 912
NmuCI GTSAC 1 cut(s) 42
NspV TTCGAA 1 cut(s) 573
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PfeI GAWTC 3 cut(s) 851, 968, 998
PflMI CCANNNNNTGG 1 cut(s) 909
PkrI GCNGC 8 cut(s) 7, 10, 32, 35, 360, 370, 592, 613
PleI GAGTC 3 cut(s) 528, 878, 949
PpsI GAGTC 3 cut(s) 528, 878, 949
PsiI TTATAA 1 cut(s) 618
Psp124BI GAGCTC 2 cut(s) 676, 795
Psp6I CCWGG 1 cut(s) 638
PspGI CCWGG 1 cut(s) 638
PspPI GGNCC 1 cut(s) 431
RsaI GTAC 4 cut(s) 221, 463, 862, 1040
RsaNI GTAC 4 cut(s) 220, 462, 861, 1039
RseI CAYNNNNRTG 1 cut(s) 245
SacI GAGCTC 2 cut(s) 676, 795
SaqAI TTAA 4 cut(s) 291, 660, 762, 1072
SatI GCNGC 8 cut(s) 6, 9, 31, 34, 359, 369, 591, 612
Sau3AI GATC 1 cut(s) 929
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 3 cut(s) 528, 878, 950
ScrFI CCNGG 2 cut(s) 640, 952
SduI GDGCHC 3 cut(s) 76, 676, 795
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 2 cut(s) 12, 484
SfuI TTCGAA 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 7 cut(s) 312, 363, 646, 697, 741, 763, 893
SsiI CCGC 1 cut(s) 717
SspMI CTAG 1 cut(s) 374
SstI GAGCTC 2 cut(s) 676, 795
StyD4I CCNGG 2 cut(s) 638, 950
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 1 cut(s) 26
TaqI TCGA 2 cut(s) 573, 928
TasI AATT 7 cut(s) 312, 363, 646, 697, 741, 763, 893
TatI WGTACW 1 cut(s) 860
TfiI GAWTC 3 cut(s) 851, 968, 998
Tru1I TTAA 4 cut(s) 291, 660, 762, 1072
Tru9I TTAA 4 cut(s) 291, 660, 762, 1072
TscAI CASTG 5 cut(s) 288, 688, 825, 1010, 1053
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 8 cut(s) 5, 8, 30, 33, 358, 368, 590, 611
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 4 cut(s) 104, 464, 843, 897
TspRI CASTG 5 cut(s) 288, 688, 825, 1010, 1053
Van91I CCANNNNNTGG 1 cut(s) 909
Vha464I CTTAAG 1 cut(s) 659
XapI RAATTY 1 cut(s) 312
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.