Rh2DG327200

RING-variant domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003198
Physical Location & Seq
Forward (+)
41288052 .. 41296338
8287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG327200.1

Sequence Viewer

Length: 1086 bp
ATGGGCAAGGAAAATTTATCAGAAGCTGAGGTTGGAGTCAGTGAGGAAGGTGGCTCACCTAGACAGAGTGATTATCTAGGGACTCACCCACGCCATAGTCTTGACAAGGATGCCGGACTGCCAACTTGTCGTGTGTGCCATTGCGCTGAATCTGACAAAAGGGGAGATGCAGCATTAGAGTTCTTGGGTATCACTCCTCCTTTACAAGAAGCATGCGTAAGCCACAGGGAAGTAAATCCTGACAGCAATATAGCCCTGAAAGATGCTGAAAGTCATAGTTCTGTCAAGAAAAATGTTGGAAATGAACCTAGGTTTTTGGAGTTTATAGGCCCTGATGGAGAAGTTTTCATTTGTAGTGCTGATTTAGAAATGGGTTCATGTCAGCATCAAGACGCTTTACTGGAGCTTGGTTGCTCTTGCAAAAATGACCTTGCTCTAGTACACTATTCATGCGCACTCAAATGGTTTATCAACCATGGATCCACTGTCTGTGAAATCTGTGGACGTGTTTCAAAGAATATCAGAGCTACAGATTTCAAAAAGGTTCTTCTTTCATTGAAAGAGTATGAATCATTGAGGGAAAGAACTGCTAGTGGGCAAACTGATCCGCCACATGCCAATACAAGTATAGGCGTAGATCCGGATGCTGTAGCTGCTATTCGAAGGCAACGGCTGAGTGAGATTTCCCTGTGGTTCAGTCCACATAATAATGGTAACGGTAACAATAATACAAATGGCAATTCTGTTGCACTTTCACAAGTTGCATCAGAAGAACCTCAGAATACTGCGGTTGTCCATGCTGAAAATGTTGCAACCAAATGGGCTATGGAAGCTACTGCTATTCTGCTTGCCACAGGGCTGCTTACCGTTACTGTAGTGTGGCTTTTAGCTCCTCATGTTGGGAAGAAAACTGCCAAAAGTGGTCTTCATATTCTCCTGGGAGGAATTTGTGCTTTAACAGTTGTGGTTTTCTTTCGATTTGTAAGTAGCTTATCCCTTTTTTTCTTATCTTATATATTCCTTTTATCCTTAGATATTTGCATTAAGTTTAATTTATTTTTGTTGATTCGTATATGGCCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

361

Amino Acids

39.26

Weight (kDa)

5.91

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 129 - 167 1.7e-06 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 454
AccIII TCCGGA 1 cut(s) 640
AciI CCGC 2 cut(s) 608, 788
AclWI GGATC 4 cut(s) 474, 487, 599, 632
AcoI YGGCCR 1 cut(s) 1076
AcsI RAATTY 2 cut(s) 13, 945
AfaI GTAC 1 cut(s) 441
AfiI CCNNNNNNNGG 1 cut(s) 899
AflIII ACRYGT 1 cut(s) 505
AgsI TTSAA 3 cut(s) 513, 538, 559
AjiI CACGTC 1 cut(s) 506
AjnI CCWGG 1 cut(s) 936
AjuI GAANNNNNNNTTGG 2 cut(s) 15, 47
AluBI AGCT 7 cut(s) 26, 406, 527, 653, 833, 890, 990
AluI AGCT 7 cut(s) 26, 406, 527, 653, 833, 890, 990
AlwI GGATC 4 cut(s) 474, 487, 599, 632
AlwNI CAGNNNCTG 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 640
AoxI GGCC 2 cut(s) 328, 1076
ApeKI GCWGC 3 cut(s) 170, 653, 859
ApoI RAATTY 2 cut(s) 13, 945
AspA2I CCTAGG 1 cut(s) 308
AspLEI GCGC 2 cut(s) 146, 455
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 2 cut(s) 48, 77
AsuII TTCGAA 1 cut(s) 661
AvrII CCTAGG 1 cut(s) 308
BalI TGGCCA 1 cut(s) 1078
BamHI GGATCC 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 917
BbvCI CCTCAGC 1 cut(s) 27
BbvI GCAGC 3 cut(s) 182, 640, 846
BccI CCATC 1 cut(s) 329
BceAI ACGGC 1 cut(s) 686
BciT130I CCWGG 1 cut(s) 938
BfaI CTAG 5 cut(s) 60, 77, 309, 437, 591
BfmI CTRYAG 3 cut(s) 528, 648, 873
BisI GCNGC 3 cut(s) 171, 654, 860
BlnI CCTAGG 1 cut(s) 308
BlsI GCNGC 3 cut(s) 172, 655, 861
Bme1390I CCNGG 1 cut(s) 938
BmgBI CACGTC 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 481
BmrFI CCNGG 1 cut(s) 938
BmsI GCATC 6 cut(s) 100, 157, 253, 394, 634, 773
BpiI GAAGAC 1 cut(s) 917
BpmI CTGGAG 1 cut(s) 422
Bpu10I CCTNAGC 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 661
BsaJI CCNNGG 3 cut(s) 308, 475, 937
BsaWI WCCGGW 1 cut(s) 640
Bsc4I CCNNNNNNNGG 1 cut(s) 899
Bse1I ACTGG 1 cut(s) 405
Bse3DI GCAATG 1 cut(s) 139
BseAI TCCGGA 1 cut(s) 640
BseBI CCWGG 1 cut(s) 938
BseDI CCNNGG 3 cut(s) 308, 475, 937
BseGI GGATG 2 cut(s) 115, 649
BseLI CCNNNNNNNGG 1 cut(s) 899
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 3 cut(s) 18, 665, 791
BseNI ACTGG 1 cut(s) 405
BseRI GAGGAG 2 cut(s) 186, 882
BseXI GCAGC 3 cut(s) 182, 640, 846
BshFI GGCC 2 cut(s) 330, 1078
BsiSI CCGG 2 cut(s) 114, 641
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 899
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 2 cut(s) 330, 1078
Bsp119I TTCGAA 1 cut(s) 661
Bsp13I TCCGGA 1 cut(s) 640
Bsp143I GATC 3 cut(s) 479, 604, 637
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 2 cut(s) 608, 788
BspANI GGCC 2 cut(s) 330, 1078
BspCNI CTCAG 3 cut(s) 19, 666, 790
BspEI TCCGGA 1 cut(s) 640
BspLI GGNNCC 1 cut(s) 481
BspPI GGATC 4 cut(s) 474, 487, 599, 632
BspT104I TTCGAA 1 cut(s) 661
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 1 cut(s) 405
BssECI CCNNGG 3 cut(s) 308, 475, 937
BssMI GATC 3 cut(s) 479, 604, 637
BssT1I CCWWGG 2 cut(s) 308, 475
Bst2UI CCWGG 1 cut(s) 938
Bst4CI ACNGT 5 cut(s) 487, 719, 868, 874, 961
BstBI TTCGAA 1 cut(s) 661
BstC8I GCNNGC 2 cut(s) 214, 849
BstDEI CTNAG 4 cut(s) 27, 674, 777, 1030
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 115, 649
BstHHI GCGC 2 cut(s) 146, 455
BstKTI GATC 3 cut(s) 482, 607, 640
BstMBI GATC 3 cut(s) 479, 604, 637
BstMWI GCNNNNNNNGC 2 cut(s) 653, 830
BstNI CCWGG 1 cut(s) 938
BstNSI RCATGY 2 cut(s) 216, 617
BstSCI CCNGG 1 cut(s) 936
BstSFI CTRYAG 3 cut(s) 528, 648, 873
BstV1I GCAGC 3 cut(s) 182, 640, 846
BstV2I GAAGAC 1 cut(s) 917
BstX2I RGATCY 2 cut(s) 479, 637
BstYI RGATCY 2 cut(s) 479, 637
BsuRI GGCC 2 cut(s) 330, 1078
BtgI CCRYGG 1 cut(s) 475
BtrI CACGTC 1 cut(s) 506
BtsCI GGATG 2 cut(s) 115, 649
BtsIMutI CAGTG 2 cut(s) 46, 483
Cac8I GCNNGC 2 cut(s) 214, 849
CaiI CAGNNNCTG 1 cut(s) 26
CfoI GCGC 2 cut(s) 146, 455
Cfr13I GGNCC 1 cut(s) 329
CseI GACGC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 440
CviAII CATG 7 cut(s) 213, 378, 450, 476, 614, 797, 896
CviQI GTAC 1 cut(s) 440
DdeI CTNAG 4 cut(s) 27, 674, 777, 1030
DpnI GATC 3 cut(s) 481, 606, 639
DpnII GATC 3 cut(s) 479, 604, 637
EaeI YGGCCR 1 cut(s) 1076
EciI GGCGGA 1 cut(s) 597
Eco130I CCWWGG 2 cut(s) 308, 475
EcoO109I RGGNCCY 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 936
EcoT14I CCWWGG 2 cut(s) 308, 475
ErhI CCWWGG 2 cut(s) 308, 475
FaeI CATG 7 cut(s) 216, 381, 453, 479, 617, 800, 899
FaqI GGGAC 1 cut(s) 94
FatI CATG 7 cut(s) 212, 377, 449, 475, 613, 796, 895
Fnu4HI GCNGC 3 cut(s) 171, 654, 860
FokI GGATG 2 cut(s) 122, 656
Fsp4HI GCNGC 3 cut(s) 171, 654, 860
FspAI RTGCGCAY 1 cut(s) 454
FspBI CTAG 5 cut(s) 60, 77, 309, 437, 591
FspI TGCGCA 1 cut(s) 454
GlaI GCGC 2 cut(s) 145, 454
GluI GCNGC 3 cut(s) 171, 654, 860
GsuI CTGGAG 1 cut(s) 422
HaeIII GGCC 2 cut(s) 330, 1078
HapII CCGG 2 cut(s) 114, 641
HgaI GACGC 1 cut(s) 401
HhaI GCGC 2 cut(s) 146, 455
Hin1II CATG 7 cut(s) 216, 381, 453, 479, 617, 800, 899
Hin6I GCGC 2 cut(s) 144, 453
HinP1I GCGC 2 cut(s) 144, 453
HinfI GANTC 5 cut(s) 36, 82, 149, 569, 1066
HpaII CCGG 2 cut(s) 114, 641
HphI GGTGA 2 cut(s) 48, 77
Hpy166II GTNNAC 3 cut(s) 442, 503, 701
Hpy188I TCNGA 5 cut(s) 22, 154, 524, 769, 780
Hpy188III TCNNGA 5 cut(s) 101, 239, 286, 389, 641
Hpy8I GTNNAC 3 cut(s) 442, 503, 701
HpyAV CCTTC 2 cut(s) 41, 657
HpyCH4III ACNGT 5 cut(s) 487, 719, 868, 874, 961
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 6 cut(s) 170, 420, 749, 764, 812, 1041
HpyF10VI GCNNNNNNNGC 2 cut(s) 653, 830
HpyF3I CTNAG 4 cut(s) 27, 674, 777, 1030
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 7 cut(s) 216, 381, 453, 479, 617, 800, 899
HspAI GCGC 2 cut(s) 144, 453
Kpn2I TCCGGA 1 cut(s) 640
Kzo9I GATC 3 cut(s) 479, 604, 637
LmnI GCTCC 2 cut(s) 403, 895
Lsp1109I GCAGC 3 cut(s) 182, 640, 846
LweI GCATC 6 cut(s) 100, 157, 253, 394, 634, 773
MaeI CTAG 5 cut(s) 60, 77, 309, 437, 591
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 3 cut(s) 713, 719, 868
MalI GATC 3 cut(s) 481, 606, 639
MboI GATC 3 cut(s) 479, 604, 637
MboII GAAGA 4 cut(s) 539, 782, 916, 917
MflI RGATCY 2 cut(s) 479, 637
MlsI TGGCCA 1 cut(s) 1078
MluCI AATT 4 cut(s) 13, 739, 945, 1051
MluNI TGGCCA 1 cut(s) 1078
MlyI GAGTC 2 cut(s) 45, 76
MmeI TCCRAC 2 cut(s) 13, 277
MnlI CCTC 7 cut(s) 22, 37, 207, 570, 786, 903, 935
Mox20I TGGCCA 1 cut(s) 1078
MroI TCCGGA 1 cut(s) 640
MscI TGGCCA 1 cut(s) 1078
MseI TTAA 4 cut(s) 956, 1044, 1050, 1084
MslI CAYNNNNRTG 2 cut(s) 460, 708
Msp20I TGGCCA 1 cut(s) 1078
MspI CCGG 2 cut(s) 114, 641
MspR9I CCNGG 1 cut(s) 938
MvaI CCWGG 1 cut(s) 938
MwoI GCNNNNNNNGC 2 cut(s) 653, 830
NcoI CCATGG 1 cut(s) 475
NdeII GATC 3 cut(s) 479, 604, 637
NlaIII CATG 7 cut(s) 216, 381, 453, 479, 617, 800, 899
NlaIV GGNNCC 1 cut(s) 481
NsbI TGCGCA 1 cut(s) 454
NspI RCATGY 2 cut(s) 216, 617
NspV TTCGAA 1 cut(s) 661
PaeI GCATGC 1 cut(s) 216
PfeI GAWTC 3 cut(s) 149, 569, 1066
PkrI GCNGC 3 cut(s) 172, 655, 861
PleI GAGTC 2 cut(s) 44, 76
PpsI GAGTC 2 cut(s) 44, 76
Psp6I CCWGG 1 cut(s) 936
PspGI CCWGG 1 cut(s) 936
PspN4I GGNNCC 1 cut(s) 481
PspPI GGNCC 1 cut(s) 329
PstNI CAGNNNCTG 1 cut(s) 26
PsuI RGATCY 2 cut(s) 479, 637
RsaI GTAC 1 cut(s) 441
RsaNI GTAC 1 cut(s) 440
RseI CAYNNNNRTG 2 cut(s) 460, 708
SaqAI TTAA 4 cut(s) 956, 1044, 1050, 1084
SatI GCNGC 3 cut(s) 171, 654, 860
Sau3AI GATC 3 cut(s) 479, 604, 637
Sau96I GGNCC 1 cut(s) 329
SchI GAGTC 2 cut(s) 45, 76
ScrFI CCNGG 1 cut(s) 938
SfaNI GCATC 6 cut(s) 100, 157, 253, 394, 634, 773
SfcI CTRYAG 3 cut(s) 528, 648, 873
SfuI TTCGAA 1 cut(s) 661
SmiMI CAYNNNNRTG 2 cut(s) 460, 708
SphI GCATGC 1 cut(s) 216
Sse9I AATT 4 cut(s) 13, 739, 945, 1051
SsiI CCGC 2 cut(s) 608, 788
SspMI CTAG 5 cut(s) 60, 77, 309, 437, 591
StyD4I CCNGG 1 cut(s) 936
StyI CCWWGG 2 cut(s) 308, 475
TaaI ACNGT 5 cut(s) 487, 719, 868, 874, 961
TaiI ACGT 1 cut(s) 508
TaqI TCGA 2 cut(s) 661, 976
TasI AATT 4 cut(s) 13, 739, 945, 1051
TatI WGTACW 1 cut(s) 439
TfiI GAWTC 3 cut(s) 149, 569, 1066
Tru1I TTAA 4 cut(s) 956, 1044, 1050, 1084
Tru9I TTAA 4 cut(s) 956, 1044, 1050, 1084
TscAI CASTG 2 cut(s) 46, 490
TseI GCWGC 3 cut(s) 170, 653, 859
TspDTI ATGAA 7 cut(s) 318, 337, 366, 438, 543, 582, 917
TspRI CASTG 2 cut(s) 46, 490
XapI RAATTY 2 cut(s) 13, 945
XceI RCATGY 2 cut(s) 216, 617
XcmI CCANNNNNNNNNTGG 1 cut(s) 823
XmaJI CCTAGG 1 cut(s) 308
XspI CTAG 5 cut(s) 60, 77, 309, 437, 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.