FvH4_1g25890

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012878
Physical Location & Seq
Reverse (-)
17793866 .. 17797383
3518 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25890.t1

Sequence Viewer

Length: 600 bp
ATGGAGAAGATAAGCCAAGCCTTTGAGAAGGTGAAGATGAACCAGGCCTTTGAGAAGGTCAATACCAAACAAGCCTTGGACAAGATGAAGCTGTTCGTCGGAATGGACGTCGACGATGACGACGAAGAATCCGCCGCCGCTTCTTCTTCCGGTCTGCAGCACCAGGATTCTTTCATCGACGACTTCAATCGCAACTGCACCTTGTCCACCAAACAGAGGTTTTATGGCTTCGCGGTTTGCCTGGCTTCTGGATTGACTTGTACACTCCTGTCGATGCTTGTTTTCTTCCATCCAATCAAGTTTGCAATTACATTCACGCTCGGAAATCTGCTTTCACTTGGAAGCACAGCATTCCTCATTGGACCTAAACGGCAATTCTCAATGATGCTGGATCCTGTTCGCATTTATGCAACAGCCATATACCTTGCGAGCATTATAATTGCATTGTTTTGTGCTCTCTATGCTCGTAACAAAATATTGACACTTCTGGCAATAATTTTGGAATTTGGTGCATTGATTTGGTATAGCTTGAGCTACATCCCTTTTGCAAGGTCCATGGTATCAAAGATCATGATGAGTTGTTTTGACACCGAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

200

Amino Acids

22.36

Weight (kDa)

6.71

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 75 - 181 7.4e-32 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 437
AatII GACGTC 1 cut(s) 111
AccI GTMKAC 1 cut(s) 111
AccII CGCG 1 cut(s) 233
AciI CCGC 4 cut(s) 132, 135, 138, 233
AclWI GGATC 2 cut(s) 386, 399
AcsI RAATTY 2 cut(s) 503, 593
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 1 cut(s) 187
AjnI CCWGG 3 cut(s) 42, 162, 240
AluBI AGCT 3 cut(s) 91, 528, 534
AluI AGCT 3 cut(s) 91, 528, 534
Alw21I GWGCWC 1 cut(s) 457
AlwI GGATC 2 cut(s) 386, 399
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 157
ApoI RAATTY 2 cut(s) 503, 593
Asp700I GAANNNNTTC 1 cut(s) 92
AspS9I GGNCC 2 cut(s) 362, 552
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 2 cut(s) 362, 552
BamHI GGATCC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 1 cut(s) 169
BccI CCATC 1 cut(s) 297
BceAI ACGGC 1 cut(s) 386
BciT130I CCWGG 3 cut(s) 44, 164, 242
BfmI CTRYAG 1 cut(s) 155
BisI GCNGC 3 cut(s) 135, 138, 158
BlsI GCNGC 3 cut(s) 136, 139, 159
Bme1390I CCNGG 3 cut(s) 44, 164, 242
Bme18I GGWCC 2 cut(s) 362, 552
BmgT120I GGNCC 2 cut(s) 362, 552
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 3 cut(s) 44, 164, 242
BmsI GCATC 2 cut(s) 264, 375
BpuEI CTTGAG 1 cut(s) 550
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 75, 555
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 216
BseBI CCWGG 3 cut(s) 44, 164, 242
BseDI CCNNGG 2 cut(s) 75, 555
BseGI GGATG 2 cut(s) 289, 537
BseLI CCNNNNNNNGG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 457
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 216
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 457
Bsp1407I TGTACA 1 cut(s) 260
Bsp143I GATC 2 cut(s) 391, 567
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 4 cut(s) 132, 135, 138, 233
BspANI GGCC 1 cut(s) 47
BspFNI CGCG 1 cut(s) 233
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 1 cut(s) 393
BspMAI CTGCAG 1 cut(s) 159
BspPI GGATC 2 cut(s) 386, 399
BsrGI TGTACA 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 75, 555
BssMI GATC 2 cut(s) 391, 567
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 75, 555
Bst2UI CCWGG 3 cut(s) 44, 164, 242
BstACI GRCGYC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 430
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 2 cut(s) 289, 537
BstFNI CGCG 1 cut(s) 233
BstKTI GATC 2 cut(s) 394, 570
BstMBI GATC 2 cut(s) 391, 567
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 3 cut(s) 44, 164, 242
BstSCI CCNGG 3 cut(s) 42, 162, 240
BstSFI CTRYAG 1 cut(s) 155
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BsuRI GGCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 555
BtsCI GGATG 2 cut(s) 289, 537
Cac8I GCNNGC 1 cut(s) 430
CciI TCATGA 1 cut(s) 570
Cfr13I GGNCC 2 cut(s) 362, 552
Csp6I GTAC 1 cut(s) 261
CviAII CATG 2 cut(s) 556, 571
CviQI GTAC 1 cut(s) 261
DpnI GATC 2 cut(s) 393, 569
DpnII GATC 2 cut(s) 391, 567
EciI GGCGGA 1 cut(s) 121
Eco130I CCWWGG 2 cut(s) 75, 555
Eco147I AGGCCT 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 362, 552
EcoRII CCWGG 3 cut(s) 42, 162, 240
EcoT14I CCWWGG 2 cut(s) 75, 555
ErhI CCWWGG 2 cut(s) 75, 555
FaeI CATG 2 cut(s) 559, 574
FaiI YATR 9 cut(s) 225, 408, 419, 421, 437, 462, 525, 557, 572
FatI CATG 2 cut(s) 555, 570
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 135, 138, 158
FokI GGATG 2 cut(s) 276, 524
Fsp4HI GCNGC 3 cut(s) 135, 138, 158
GluI GCNGC 3 cut(s) 135, 138, 158
HaeIII GGCC 1 cut(s) 47
HapII CCGG 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 2 cut(s) 559, 574
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 2 cut(s) 128, 167
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 3 cut(s) 112, 207, 263
Hpy188I TCNGA 2 cut(s) 101, 323
Hpy188III TCNNGA 2 cut(s) 249, 571
Hpy8I GTNNAC 3 cut(s) 112, 207, 263
Hpy99I CGWCG 5 cut(s) 101, 113, 116, 125, 182
HpyAV CCTTC 2 cut(s) 22, 49
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 7 cut(s) 157, 198, 305, 410, 443, 512, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 559, 574
Kzo9I GATC 2 cut(s) 391, 567
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 2 cut(s) 264, 375
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 467
MalI GATC 2 cut(s) 393, 569
MboI GATC 2 cut(s) 391, 567
MboII GAAGA 6 cut(s) 19, 46, 135, 137, 138, 277
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 6 cut(s) 306, 374, 438, 495, 503, 593
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 2 cut(s) 210, 365
MroXI GAANNNNTTC 1 cut(s) 92
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 3 cut(s) 44, 164, 242
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 3 cut(s) 44, 164, 242
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 461
NcoI CCATGG 1 cut(s) 555
NdeII GATC 2 cut(s) 391, 567
NlaIII CATG 2 cut(s) 559, 574
NlaIV GGNNCC 1 cut(s) 393
PagI TCATGA 1 cut(s) 570
PceI AGGCCT 1 cut(s) 47
PcsI WCGNNNNNNNCGW 3 cut(s) 105, 117, 120
PctI GAATGC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 92
PfeI GAWTC 2 cut(s) 128, 167
PkrI GCNGC 3 cut(s) 136, 139, 159
PsiI TTATAA 1 cut(s) 437
Psp6I CCWGG 3 cut(s) 42, 162, 240
PspGI CCWGG 3 cut(s) 42, 162, 240
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 2 cut(s) 362, 552
PstI CTGCAG 1 cut(s) 159
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
SalI GTCGAC 1 cut(s) 110
SatI GCNGC 3 cut(s) 135, 138, 158
Sau3AI GATC 2 cut(s) 391, 567
Sau96I GGNCC 2 cut(s) 362, 552
ScrFI CCNGG 3 cut(s) 44, 164, 242
SduI GDGCHC 1 cut(s) 457
SfaNI GCATC 2 cut(s) 264, 375
SfcI CTRYAG 1 cut(s) 155
SgrDI CGTCGACG 1 cut(s) 110
SinI GGWCC 2 cut(s) 362, 552
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 6 cut(s) 306, 374, 438, 495, 503, 593
SseBI AGGCCT 1 cut(s) 47
SsiI CCGC 4 cut(s) 132, 135, 138, 233
SspI AATATT 1 cut(s) 477
StuI AGGCCT 1 cut(s) 47
StyD4I CCNGG 3 cut(s) 42, 162, 240
StyI CCWWGG 2 cut(s) 75, 555
TaiI ACGT 1 cut(s) 111
TaqI TCGA 3 cut(s) 111, 177, 272
TasI AATT 6 cut(s) 306, 374, 438, 495, 503, 593
TatI WGTACW 1 cut(s) 260
TauI GCSGC 2 cut(s) 137, 140
TfiI GAWTC 2 cut(s) 128, 167
TseI GCWGC 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 53, 101, 163
VpaK11BI GGWCC 2 cut(s) 362, 552
XapI RAATTY 2 cut(s) 503, 593
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 92
ZraI GACGTC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.