RLG00000023174

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0012878
Physical Location & Seq
Forward (+)
19467252 .. 19470066
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023174

Sequence Viewer

Length: 606 bp
ATGGAGAAGATTAGCCAAGCCTTTGAGAAGGTGAAGATGAACCAAGCCTTTGAAAAGGTGAATGTCAACCAAGCCTTCGACAAGATGAAGATGCTCGTCGGAATGGAGGCCGACGACGACGACGAAGAAGCCGCCGCCGCCGCCTCTTCTTCTTCTGCTCTGCAGCACCAGGATTCTTTCATGGACGACTTCAATCGCAACTGCACCTTGTCCACCAAACAGAGGTTTTATGGCTTCGCCATCTGCTTGGCTTCTGGATTGACTTGTACACTCCTGTCGATGCTTGTTTTCTTCCATCCAATCAAGTTTGCAATTACATTCACACTTGGGAATCTGCTTTCACTTGGCAGCACAGCATTCCTCATTGGTCCTAAACGGCAAGTCACAATGATGCTGGATCCTGTTCGCATTTATGCGACCGCCATATACATTGCGAGCATAATAATTGCATTGTTTTGTGCTCTCTATGCTCATAACAAAATATTGACACTTTTGGCAATAATTTTGGAATTTGGTGCATTGGTTTGGTATAGCTTGAGCTACATTCCTTTTGCAAGGTCCATGGTATCGAAGATCATGCTAGCTTGTTTTGACACTGAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

202

Amino Acids

22.43

Weight (kDa)

5.89

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 77 - 183 3.4e-32 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 132, 135, 138, 141, 420
AclWI GGATC 2 cut(s) 392, 405
AcsI RAATTY 2 cut(s) 509, 599
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 2 cut(s) 53, 193
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 3 cut(s) 534, 540, 584
AluI AGCT 3 cut(s) 534, 540, 584
Alw21I GWGCWC 1 cut(s) 463
AlwI GGATC 2 cut(s) 392, 405
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 163, 348
ApoI RAATTY 2 cut(s) 509, 599
AspS9I GGNCC 2 cut(s) 368, 558
AsuHPI GGTGA 2 cut(s) 43, 70
AsuNHI GCTAGC 1 cut(s) 580
AvaII GGWCC 2 cut(s) 368, 558
BamHI GGATCC 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 463
BbvI GCAGC 2 cut(s) 175, 360
BccI CCATC 2 cut(s) 248, 303
BceAI ACGGC 1 cut(s) 392
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BciT130I CCWGG 1 cut(s) 170
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 1 cut(s) 161
BisI GCNGC 6 cut(s) 132, 135, 138, 141, 164, 349
BlsI GCNGC 6 cut(s) 133, 136, 139, 142, 165, 350
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 2 cut(s) 368, 558
BmgT120I GGNCC 2 cut(s) 368, 558
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 3 cut(s) 81, 270, 381
BmtI GCTAGC 1 cut(s) 584
BpuEI CTTGAG 1 cut(s) 556
BsaJI CCNNGG 1 cut(s) 561
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMI GCAATG 1 cut(s) 429
BseXI GCAGC 2 cut(s) 175, 360
BsgI GTGCAG 1 cut(s) 187
Bsh1285I CGRYCG 1 cut(s) 420
BshFI GGCC 1 cut(s) 110
BsiEI CGRYCG 1 cut(s) 420
BsiHKAI GWGCWC 1 cut(s) 463
BslI CCNNNNNNNGG 1 cut(s) 222
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 463
Bsp1407I TGTACA 1 cut(s) 266
Bsp143I GATC 2 cut(s) 397, 573
Bsp19I CCATGG 1 cut(s) 561
BspACI CCGC 5 cut(s) 132, 135, 138, 141, 420
BspANI GGCC 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 399
BspMAI CTGCAG 1 cut(s) 165
BspOI GCTAGC 1 cut(s) 584
BspPI GGATC 2 cut(s) 392, 405
BsrDI GCAATG 1 cut(s) 429
BsrGI TGTACA 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 2 cut(s) 397, 573
BssT1I CCWWGG 1 cut(s) 561
Bst2UI CCWGG 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 151
BstAUI TGTACA 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 436, 582
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 295
BstKTI GATC 2 cut(s) 400, 576
BstMBI GATC 2 cut(s) 397, 573
BstMCI CGRYCG 1 cut(s) 420
BstMWI GCNNNNNNNGC 3 cut(s) 137, 140, 467
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 161
BstV1I GCAGC 2 cut(s) 175, 360
BstX2I RGATCY 1 cut(s) 397
BstXI CCANNNNNNTGG 1 cut(s) 247
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 1 cut(s) 295
BtsIMutI CAGTG 1 cut(s) 594
Cac8I GCNNGC 2 cut(s) 436, 582
Cfr13I GGNCC 2 cut(s) 368, 558
Csp6I GTAC 1 cut(s) 267
CviAII CATG 3 cut(s) 181, 562, 577
CviQI GTAC 1 cut(s) 267
DpnI GATC 2 cut(s) 399, 575
DpnII GATC 2 cut(s) 397, 573
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 561
Eco47I GGWCC 2 cut(s) 368, 558
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 561
FaeI CATG 3 cut(s) 184, 565, 580
FatI CATG 3 cut(s) 180, 561, 576
Fnu4HI GCNGC 6 cut(s) 132, 135, 138, 141, 164, 349
FokI GGATG 1 cut(s) 282
Fsp4HI GCNGC 6 cut(s) 132, 135, 138, 141, 164, 349
FspBI CTAG 1 cut(s) 581
GluI GCNGC 6 cut(s) 132, 135, 138, 141, 164, 349
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 3 cut(s) 184, 565, 580
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 2 cut(s) 173, 331
HphI GGTGA 2 cut(s) 43, 70
Hpy166II GTNNAC 3 cut(s) 67, 213, 269
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 1 cut(s) 255
Hpy8I GTNNAC 3 cut(s) 67, 213, 269
Hpy99I CGWCG 5 cut(s) 101, 116, 119, 122, 125
HpyAV CCTTC 2 cut(s) 22, 85
HpyCH4V TGCA 6 cut(s) 163, 204, 311, 449, 518, 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 140, 467
Hsp92II CATG 3 cut(s) 184, 565, 580
Kzo9I GATC 2 cut(s) 397, 573
LpnPI CCDG 6 cut(s) 155, 182, 240, 287, 380, 414
Lsp1109I GCAGC 2 cut(s) 175, 360
LweI GCATC 3 cut(s) 81, 270, 381
MaeI CTAG 1 cut(s) 581
MaeIII GTNAC 1 cut(s) 382
MalI GATC 2 cut(s) 399, 575
MboI GATC 2 cut(s) 397, 573
MboII GAAGA 9 cut(s) 19, 46, 100, 137, 138, 141, 144, 283, 583
MflI RGATCY 1 cut(s) 397
MhlI GDGCHC 1 cut(s) 463
MluCI AATT 5 cut(s) 312, 444, 501, 509, 599
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 4 cut(s) 100, 154, 216, 371
MslI CAYNNNNRTG 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 3 cut(s) 137, 140, 467
NcoI CCATGG 1 cut(s) 561
NdeII GATC 2 cut(s) 397, 573
NheI GCTAGC 1 cut(s) 580
NlaIII CATG 3 cut(s) 184, 565, 580
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 1 cut(s) 382
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 1 cut(s) 356
PfeI GAWTC 2 cut(s) 173, 331
PkrI GCNGC 6 cut(s) 133, 136, 139, 142, 165, 350
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 399
PspPI GGNCC 2 cut(s) 368, 558
PstI CTGCAG 1 cut(s) 165
PsuI RGATCY 1 cut(s) 397
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 389
SatI GCNGC 6 cut(s) 132, 135, 138, 141, 164, 349
Sau3AI GATC 2 cut(s) 397, 573
Sau96I GGNCC 2 cut(s) 368, 558
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 1 cut(s) 463
SetI ASST 8 cut(s) 33, 60, 209, 227, 536, 542, 560, 586
SfaNI GCATC 3 cut(s) 81, 270, 381
SfcI CTRYAG 1 cut(s) 161
SinI GGWCC 2 cut(s) 368, 558
SmiMI CAYNNNNRTG 1 cut(s) 389
SmlI CTYRAG 1 cut(s) 535
SmoI CTYRAG 1 cut(s) 535
Sse9I AATT 5 cut(s) 312, 444, 501, 509, 599
SsiI CCGC 5 cut(s) 132, 135, 138, 141, 420
SspI AATATT 1 cut(s) 483
SspMI CTAG 1 cut(s) 581
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 561
TaqI TCGA 3 cut(s) 78, 278, 569
TasI AATT 5 cut(s) 312, 444, 501, 509, 599
TatI WGTACW 1 cut(s) 266
TauI GCSGC 4 cut(s) 134, 137, 140, 143
TfiI GAWTC 2 cut(s) 173, 331
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 2 cut(s) 163, 348
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 3 cut(s) 53, 101, 169
TspRI CASTG 1 cut(s) 601
VpaK11BI GGWCC 2 cut(s) 368, 558
XapI RAATTY 2 cut(s) 509, 599
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.