Rh3CG299600

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0012878
Physical Location & Seq
Reverse (-)
30835943 .. 30839865
3923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG299600.1

Sequence Viewer

Length: 603 bp
ATGGAGAAGATTAGCCAAGCCTTTGAGAAGGTGAAGATGAACCAAGCCTTTGAAAAGGTGAACGTCAACCAAGCCTTCGACAAGATGAAGATGCTCGTCGGAATGGAAGCCGCCGACGACGACGACGACGAAGAAGCCGCCTCTTCTTCTTCTGCTCTGCAGCACCAGGATTCTTTCATGGACGACTTCAATCGCAACTGCACCTTGTCCACCAAACAGAGGTTTTATGGCTTCGCCATCTGCTTGGCTTCTGGATTGACTTGTACACTCCTGTCGATGCTTGTTTTCTTCCATCCAATCAAGTTTGCAATTACATTCACACTTGGGAATCTGCTTTCACTTGGCAGCACAGCATTCCTCATTGGACCTAAACGGCAAGTCACAATGATGCTGGATCCTGTTCGCATTTACGCGACAGCCATATACATTGCGAGCATAATAATTGCATTGTTTTGTGCTCTCTATGCTCATAACAAAATATTGACACTTTTGGCAATAATTTTGGAATTTGGTGCATTGGTTTGGTATAGCTTGAGCTACATTCCTTTTGCAAGGTCCATGGTATCGAAGATCATGCTAGCTTGTTTTGACACTGAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

200

Amino Acids

22.4

Weight (kDa)

5.58

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 76 - 182 3.4e-32 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 413
AciI CCGC 2 cut(s) 111, 138
AclWI GGATC 2 cut(s) 389, 402
AcsI RAATTY 2 cut(s) 506, 596
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 2 cut(s) 53, 190
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 3 cut(s) 531, 537, 581
AluI AGCT 3 cut(s) 531, 537, 581
Alw21I GWGCWC 1 cut(s) 460
AlwI GGATC 2 cut(s) 389, 402
ApeKI GCWGC 2 cut(s) 160, 345
ApoI RAATTY 2 cut(s) 506, 596
AspS9I GGNCC 2 cut(s) 365, 555
AsuHPI GGTGA 2 cut(s) 43, 70
AsuNHI GCTAGC 1 cut(s) 577
AvaII GGWCC 2 cut(s) 365, 555
BamHI GGATCC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 2 cut(s) 172, 357
BccI CCATC 2 cut(s) 245, 300
BceAI ACGGC 1 cut(s) 389
BcgI CGANNNNNNTGC 2 cut(s) 556, 590
BciT130I CCWGG 1 cut(s) 167
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 1 cut(s) 158
BisI GCNGC 4 cut(s) 111, 138, 161, 346
BlsI GCNGC 4 cut(s) 112, 139, 162, 347
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 2 cut(s) 365, 555
BmgT120I GGNCC 2 cut(s) 365, 555
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 3 cut(s) 81, 267, 378
BmtI GCTAGC 1 cut(s) 581
BpuEI CTTGAG 1 cut(s) 553
BsaJI CCNNGG 1 cut(s) 558
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 558
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 426
BseXI GCAGC 2 cut(s) 172, 357
BsgI GTGCAG 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 219
BsmI GAATGC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 460
Bsp1407I TGTACA 1 cut(s) 263
Bsp143I GATC 2 cut(s) 394, 570
Bsp19I CCATGG 1 cut(s) 558
BspACI CCGC 2 cut(s) 111, 138
BspFNI CGCG 1 cut(s) 413
BspLI GGNNCC 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 162
BspOI GCTAGC 1 cut(s) 581
BspPI GGATC 2 cut(s) 389, 402
BsrDI GCAATG 1 cut(s) 426
BsrGI TGTACA 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 558
BssMI GATC 2 cut(s) 394, 570
BssT1I CCWWGG 1 cut(s) 558
Bst2UI CCWGG 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 148
BstAUI TGTACA 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 433, 579
BstDSI CCRYGG 1 cut(s) 558
BstF5I GGATG 1 cut(s) 292
BstFNI CGCG 1 cut(s) 413
BstKTI GATC 2 cut(s) 397, 573
BstMBI GATC 2 cut(s) 394, 570
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 158
BstUI CGCG 1 cut(s) 413
BstV1I GCAGC 2 cut(s) 172, 357
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 244
BstYI RGATCY 1 cut(s) 394
BtgI CCRYGG 1 cut(s) 558
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 591
Cac8I GCNNGC 2 cut(s) 433, 579
Cfr13I GGNCC 2 cut(s) 365, 555
Csp6I GTAC 1 cut(s) 264
CviAII CATG 3 cut(s) 178, 559, 574
CviQI GTAC 1 cut(s) 264
DpnI GATC 2 cut(s) 396, 572
DpnII GATC 2 cut(s) 394, 570
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 558
Eco47I GGWCC 2 cut(s) 365, 555
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 558
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 3 cut(s) 181, 562, 577
FatI CATG 3 cut(s) 177, 558, 573
Fnu4HI GCNGC 4 cut(s) 111, 138, 161, 346
FokI GGATG 1 cut(s) 279
Fsp4HI GCNGC 4 cut(s) 111, 138, 161, 346
FspBI CTAG 1 cut(s) 578
GluI GCNGC 4 cut(s) 111, 138, 161, 346
Hin1II CATG 3 cut(s) 181, 562, 577
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 2 cut(s) 170, 328
HphI GGTGA 2 cut(s) 43, 70
Hpy166II GTNNAC 4 cut(s) 61, 67, 210, 266
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 1 cut(s) 252
Hpy8I GTNNAC 4 cut(s) 61, 67, 210, 266
Hpy99I CGWCG 6 cut(s) 101, 119, 122, 125, 128, 131
HpyAV CCTTC 2 cut(s) 22, 85
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 6 cut(s) 160, 201, 308, 446, 515, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 3 cut(s) 181, 562, 577
Kzo9I GATC 2 cut(s) 394, 570
LpnPI CCDG 6 cut(s) 152, 179, 237, 284, 377, 411
Lsp1109I GCAGC 2 cut(s) 172, 357
LweI GCATC 3 cut(s) 81, 267, 378
MaeI CTAG 1 cut(s) 578
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 379
MalI GATC 2 cut(s) 396, 572
MboI GATC 2 cut(s) 394, 570
MboII GAAGA 9 cut(s) 19, 46, 100, 135, 138, 141, 143, 280, 580
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 5 cut(s) 309, 441, 498, 506, 596
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 3 cut(s) 151, 213, 368
MslI CAYNNNNRTG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 167
Mva1269I GAATGC 1 cut(s) 353
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 464
NcoI CCATGG 1 cut(s) 558
NdeII GATC 2 cut(s) 394, 570
NheI GCTAGC 1 cut(s) 577
NlaIII CATG 3 cut(s) 181, 562, 577
NlaIV GGNNCC 1 cut(s) 396
NmuCI GTSAC 1 cut(s) 379
PcsI WCGNNNNNNNCGW 2 cut(s) 123, 126
PctI GAATGC 1 cut(s) 353
PfeI GAWTC 2 cut(s) 170, 328
PkrI GCNGC 4 cut(s) 112, 139, 162, 347
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 2 cut(s) 365, 555
PstI CTGCAG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 394
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
RseI CAYNNNNRTG 1 cut(s) 386
SatI GCNGC 4 cut(s) 111, 138, 161, 346
Sau3AI GATC 2 cut(s) 394, 570
Sau96I GGNCC 2 cut(s) 365, 555
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 460
SfaNI GCATC 3 cut(s) 81, 267, 378
SfcI CTRYAG 1 cut(s) 158
SinI GGWCC 2 cut(s) 365, 555
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
Sse9I AATT 5 cut(s) 309, 441, 498, 506, 596
SsiI CCGC 2 cut(s) 111, 138
SspI AATATT 1 cut(s) 480
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 1 cut(s) 165
StyI CCWWGG 1 cut(s) 558
TaiI ACGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 78, 275, 566
TasI AATT 5 cut(s) 309, 441, 498, 506, 596
TatI WGTACW 1 cut(s) 263
TauI GCSGC 2 cut(s) 113, 140
TfiI GAWTC 2 cut(s) 170, 328
TscAI CASTG 1 cut(s) 598
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 2 cut(s) 160, 345
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 3 cut(s) 53, 101, 166
TspRI CASTG 1 cut(s) 598
VpaK11BI GGWCC 2 cut(s) 365, 555
XapI RAATTY 2 cut(s) 506, 596
XspI CTAG 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.