Rroxscaffold_6G00397240

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012878
Physical Location & Seq
Forward (+)
18899978 .. 18903184
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00397240.1

Sequence Viewer

Length: 597 bp
ATGGAGAAGATTAGCCAAGCCTTTGAGAAGGTGAAGATGAACCAAGCCTTTGAAAAGGTGAATGTCAACCAAGCCTTCGACAAGATGAAGATGCTCGTCGGAATGGAGGCCGACGACGACGACGAAGAAGCCGCCTCTTCTTCTTCTGCTCTGCAGCACCAGGATTCTTTCATGGACGACTTCAATCGCAACTGCACCTTGTCCACCAAACAGAGGTTTTATGGCTTCGCCATCTGCTTGGCTTCTGGATTGACTTGTACACTCCTGTCGATGCTTGTTTTCTTCCATCCAATCAAGTTTGCAATTACATTCACACTTGGGAATCTGCTTTCACTTGGCAGCACAGCATTCCTCATTGGACCTAAACGGCAAGTCACAATGATGCTGGATCCTGTTCGCATTTATGCGACAGCCATATACATTGCGAGCATAATAATTGCATTGTTTTGTGCTCTCTATGCTCATAACAAAATATTGACGCTTTTGGCAATAATTTTGGAATTTGGTGCATTGGTTTGGTATAGCTTGAGCTACATTCCTTTTGCAAGGTCCATGGTATCGAAGATCATGCTAGCTTGTTTTGACACTGAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

198

Amino Acids

22.22

Weight (kDa)

5.89

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 74 - 180 3.3e-32 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 132
AclWI GGATC 2 cut(s) 383, 396
AcsI RAATTY 2 cut(s) 500, 590
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 2 cut(s) 53, 184
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 3 cut(s) 525, 531, 575
AluI AGCT 3 cut(s) 525, 531, 575
Alw21I GWGCWC 1 cut(s) 454
AlwI GGATC 2 cut(s) 383, 396
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 154, 339
ApoI RAATTY 2 cut(s) 500, 590
AspS9I GGNCC 2 cut(s) 359, 549
AsuHPI GGTGA 2 cut(s) 43, 70
AsuNHI GCTAGC 1 cut(s) 571
AvaII GGWCC 2 cut(s) 359, 549
BamHI GGATCC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 2 cut(s) 166, 351
BccI CCATC 2 cut(s) 239, 294
BceAI ACGGC 1 cut(s) 383
BcgI CGANNNNNNTGC 2 cut(s) 550, 584
BciT130I CCWGG 1 cut(s) 161
BfaI CTAG 1 cut(s) 572
BfmI CTRYAG 1 cut(s) 152
BisI GCNGC 3 cut(s) 132, 155, 340
BlsI GCNGC 3 cut(s) 133, 156, 341
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 2 cut(s) 359, 549
BmgT120I GGNCC 2 cut(s) 359, 549
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 3 cut(s) 81, 261, 372
BmtI GCTAGC 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 547
BsaJI CCNNGG 1 cut(s) 552
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 420
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 552
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMI GCAATG 1 cut(s) 420
BseXI GCAGC 2 cut(s) 166, 351
BsgI GTGCAG 1 cut(s) 178
BshFI GGCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 454
BslI CCNNNNNNNGG 1 cut(s) 213
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 454
Bsp1407I TGTACA 1 cut(s) 257
Bsp143I GATC 2 cut(s) 388, 564
Bsp19I CCATGG 1 cut(s) 552
BspACI CCGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 390
BspMAI CTGCAG 1 cut(s) 156
BspOI GCTAGC 1 cut(s) 575
BspPI GGATC 2 cut(s) 383, 396
BsrDI GCAATG 1 cut(s) 420
BsrGI TGTACA 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 552
BssMI GATC 2 cut(s) 388, 564
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 142
BstAUI TGTACA 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 427, 573
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 391, 567
BstMBI GATC 2 cut(s) 388, 564
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 166, 351
BstX2I RGATCY 1 cut(s) 388
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 1 cut(s) 388
BsuRI GGCC 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 552
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 2 cut(s) 427, 573
Cfr13I GGNCC 2 cut(s) 359, 549
CseI GACGC 1 cut(s) 487
Csp6I GTAC 1 cut(s) 258
CviAII CATG 3 cut(s) 172, 553, 568
CviQI GTAC 1 cut(s) 258
DpnI GATC 2 cut(s) 390, 566
DpnII GATC 2 cut(s) 388, 564
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 552
Eco47I GGWCC 2 cut(s) 359, 549
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 3 cut(s) 175, 556, 571
FatI CATG 3 cut(s) 171, 552, 567
Fnu4HI GCNGC 3 cut(s) 132, 155, 340
FokI GGATG 1 cut(s) 273
Fsp4HI GCNGC 3 cut(s) 132, 155, 340
FspBI CTAG 1 cut(s) 572
GluI GCNGC 3 cut(s) 132, 155, 340
HaeIII GGCC 1 cut(s) 110
HgaI GACGC 1 cut(s) 487
Hin1II CATG 3 cut(s) 175, 556, 571
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 2 cut(s) 164, 322
HphI GGTGA 2 cut(s) 43, 70
Hpy166II GTNNAC 3 cut(s) 67, 204, 260
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 1 cut(s) 246
Hpy8I GTNNAC 3 cut(s) 67, 204, 260
Hpy99I CGWCG 5 cut(s) 101, 116, 119, 122, 125
HpyAV CCTTC 2 cut(s) 22, 85
HpyCH4V TGCA 6 cut(s) 154, 195, 302, 440, 509, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
Hsp92II CATG 3 cut(s) 175, 556, 571
Kzo9I GATC 2 cut(s) 388, 564
LpnPI CCDG 6 cut(s) 146, 173, 231, 278, 371, 405
Lsp1109I GCAGC 2 cut(s) 166, 351
LweI GCATC 3 cut(s) 81, 261, 372
MaeI CTAG 1 cut(s) 572
MaeIII GTNAC 1 cut(s) 373
MalI GATC 2 cut(s) 390, 566
MboI GATC 2 cut(s) 388, 564
MboII GAAGA 9 cut(s) 19, 46, 100, 129, 132, 135, 137, 274, 574
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 5 cut(s) 303, 435, 492, 500, 590
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 4 cut(s) 100, 145, 207, 362
MslI CAYNNNNRTG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 161
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 458
NcoI CCATGG 1 cut(s) 552
NdeII GATC 2 cut(s) 388, 564
NheI GCTAGC 1 cut(s) 571
NlaIII CATG 3 cut(s) 175, 556, 571
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 1 cut(s) 347
PfeI GAWTC 2 cut(s) 164, 322
PkrI GCNGC 3 cut(s) 133, 156, 341
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 390
PspPI GGNCC 2 cut(s) 359, 549
PstI CTGCAG 1 cut(s) 156
PsuI RGATCY 1 cut(s) 388
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
RseI CAYNNNNRTG 1 cut(s) 380
SatI GCNGC 3 cut(s) 132, 155, 340
Sau3AI GATC 2 cut(s) 388, 564
Sau96I GGNCC 2 cut(s) 359, 549
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 454
SetI ASST 9 cut(s) 33, 60, 200, 218, 364, 527, 533, 551, 577
SfaNI GCATC 3 cut(s) 81, 261, 372
SfcI CTRYAG 1 cut(s) 152
SinI GGWCC 2 cut(s) 359, 549
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 526
SmoI CTYRAG 1 cut(s) 526
Sse9I AATT 5 cut(s) 303, 435, 492, 500, 590
SsiI CCGC 1 cut(s) 132
SspI AATATT 1 cut(s) 474
SspMI CTAG 1 cut(s) 572
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 552
TaqI TCGA 3 cut(s) 78, 269, 560
TasI AATT 5 cut(s) 303, 435, 492, 500, 590
TatI WGTACW 1 cut(s) 257
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 2 cut(s) 164, 322
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 2 cut(s) 154, 339
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 3 cut(s) 53, 101, 160
TspRI CASTG 1 cut(s) 592
VpaK11BI GGWCC 2 cut(s) 359, 549
XapI RAATTY 2 cut(s) 500, 590
XspI CTAG 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.