Rh3BG301300

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012878
Physical Location & Seq
Reverse (-)
30283245 .. 30286467
3223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG301300.1

Sequence Viewer

Length: 564 bp
ATGGAGAAGATTAGCCAAGCCTTTGAGAAGGTGAAGATGAACCAAGCCTTTGAAAAGGTGAACGTCAACCAAGCCTTTGACAAGATGAAGATGCTCGTCGGAATGGAGGTCGACGACGACGACGACGAAGAAGCCGCCGCCTCTTCTTCTTCTGCTCTGCAGCACCAGGATTCTTTCATGGACGACTTCAATCGCAACTGCACCTTGTCCACCAAACAGAGGTTTTATGGCTTCGCCATCTGCTTGGCTTCTGGATTGACTTGTACACTCCTGTCGATGCTTGTTTTCTTCCATCCAATCAAGTTTGCAATTACATTCACACTTGGGAATCTGCTTTCACTTGGCAGCACAGCATTCCTCATTGGACCTAAACGGCAAGTCACAATGATGCTGGATCCTGTTCGCATTTATGCGACAGCCATATACATTGCGAGCATAATAATTGCATTGTTTTGTGCTCTCTATGCTCATAACAAAATATTGACACTTTTGGCAATAATTTTGGAATTTGGTGCATTGGTTTGGTATGTGATAGTTGTTATAATGAGTACAGCTGTTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

187

Amino Acids

20.82

Weight (kDa)

5.54

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 76 - 179 9.4e-29 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AccI GTMKAC 1 cut(s) 111
AciI CCGC 2 cut(s) 135, 138
AclWI GGATC 2 cut(s) 389, 402
AcsI RAATTY 1 cut(s) 506
AfaI GTAC 2 cut(s) 265, 550
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 2 cut(s) 53, 190
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 1 cut(s) 554
AluI AGCT 1 cut(s) 554
Alw21I GWGCWC 1 cut(s) 460
AlwI GGATC 2 cut(s) 389, 402
ApeKI GCWGC 2 cut(s) 160, 345
ApoI RAATTY 1 cut(s) 506
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 43, 70
AvaII GGWCC 1 cut(s) 365
BamHI GGATCC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 460
BbvI GCAGC 2 cut(s) 172, 357
BccI CCATC 2 cut(s) 245, 300
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 158
BisI GCNGC 4 cut(s) 135, 138, 161, 346
BlsI GCNGC 4 cut(s) 136, 139, 162, 347
Bme1390I CCNGG 1 cut(s) 167
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 1 cut(s) 167
BmsI GCATC 3 cut(s) 81, 267, 378
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 426
BseBI CCWGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 426
BseXI GCAGC 2 cut(s) 172, 357
BsgI GTGCAG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 219
BsmI GAATGC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 460
Bsp1407I TGTACA 1 cut(s) 263
Bsp143I GATC 1 cut(s) 394
BspACI CCGC 2 cut(s) 135, 138
BspLI GGNNCC 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 162
BspPI GGATC 2 cut(s) 389, 402
BsrDI GCAATG 1 cut(s) 426
BsrGI TGTACA 1 cut(s) 263
BssMI GATC 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 148
BstAUI TGTACA 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 433
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 1 cut(s) 397
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 165
BstSFI CTRYAG 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 172, 357
BstX2I RGATCY 1 cut(s) 394
BstXI CCANNNNNNTGG 1 cut(s) 244
BstYI RGATCY 1 cut(s) 394
BtsCI GGATG 1 cut(s) 292
Cac8I GCNNGC 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 365
Csp6I GTAC 2 cut(s) 264, 549
CviAII CATG 1 cut(s) 178
CviJI RGCY 9 cut(s) 15, 20, 47, 74, 134, 231, 248, 419, 554
CviKI_1 RGCY 9 cut(s) 15, 20, 47, 74, 134, 231, 248, 419, 554
CviQI GTAC 2 cut(s) 264, 549
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 165
FaeI CATG 1 cut(s) 181
FatI CATG 1 cut(s) 177
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 4 cut(s) 135, 138, 161, 346
FokI GGATG 1 cut(s) 279
Fsp4HI GCNGC 4 cut(s) 135, 138, 161, 346
GluI GCNGC 4 cut(s) 135, 138, 161, 346
Hin1II CATG 1 cut(s) 181
HincII GTYRAC 2 cut(s) 67, 112
HindII GTYRAC 2 cut(s) 67, 112
HinfI GANTC 2 cut(s) 170, 328
HphI GGTGA 2 cut(s) 43, 70
Hpy166II GTNNAC 5 cut(s) 61, 67, 112, 210, 266
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 1 cut(s) 252
Hpy8I GTNNAC 5 cut(s) 61, 67, 112, 210, 266
Hpy99I CGWCG 6 cut(s) 101, 116, 119, 122, 125, 128
HpyAV CCTTC 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 5 cut(s) 160, 201, 308, 446, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 181
Kzo9I GATC 1 cut(s) 394
LpnPI CCDG 6 cut(s) 152, 179, 237, 284, 377, 411
Lsp1109I GCAGC 2 cut(s) 172, 357
LweI GCATC 3 cut(s) 81, 267, 378
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 379
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 8 cut(s) 19, 46, 100, 135, 138, 140, 141, 280
MflI RGATCY 1 cut(s) 394
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 4 cut(s) 309, 441, 498, 506
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 4 cut(s) 100, 151, 213, 368
MslI CAYNNNNRTG 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 554
MspR9I CCNGG 1 cut(s) 167
Mva1269I GAATGC 1 cut(s) 353
MvaI CCWGG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 464
NdeII GATC 1 cut(s) 394
NlaIII CATG 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 396
NmuCI GTSAC 1 cut(s) 379
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 120, 123
PctI GAATGC 1 cut(s) 353
PfeI GAWTC 2 cut(s) 170, 328
PkrI GCNGC 4 cut(s) 136, 139, 162, 347
PsiI TTATAA 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 365
PstI CTGCAG 1 cut(s) 162
PsuI RGATCY 1 cut(s) 394
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 2 cut(s) 265, 550
RsaNI GTAC 2 cut(s) 264, 549
RseI CAYNNNNRTG 1 cut(s) 386
SalI GTCGAC 1 cut(s) 110
SatI GCNGC 4 cut(s) 135, 138, 161, 346
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 167
SduI GDGCHC 1 cut(s) 460
SetI ASST 8 cut(s) 33, 60, 66, 111, 206, 224, 370, 556
SfaNI GCATC 3 cut(s) 81, 267, 378
SfcI CTRYAG 1 cut(s) 158
SinI GGWCC 1 cut(s) 365
SmiMI CAYNNNNRTG 1 cut(s) 386
Sse9I AATT 4 cut(s) 309, 441, 498, 506
SsiI CCGC 2 cut(s) 135, 138
SspI AATATT 1 cut(s) 480
StyD4I CCNGG 1 cut(s) 165
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 111, 275
TasI AATT 4 cut(s) 309, 441, 498, 506
TatI WGTACW 2 cut(s) 263, 548
TauI GCSGC 2 cut(s) 137, 140
TfiI GAWTC 2 cut(s) 170, 328
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 2 cut(s) 160, 345
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 3 cut(s) 53, 101, 166
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 506
XmiI GTMKAC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.