RchiOBHm_Chr3g0485031

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0012878
Physical Location & Seq
Reverse (-)
31615008 .. 31618049
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44970

Sequence Viewer

Length: 600 bp
ATGGAGAAGATTAGCCAAGCCTTTGAGAAGGTGAAGATGAACCAAGCCTTTGAAAAGGTGAACGTCAACCAAGCCTTCGACAAGATGAAGATGCTCGTCGGAATGGAGGCCGACAACGACGACGACGAAGAAGCCGCCTCTTCTTCTTCTGCTCTGCAGCACCAGGATTCTTTCATGGACGACTTCAATCGCAACTGCACCTTGTCCACCAAACAGAGGTTTTATGGCTTCGCCATCTGCTTGGCTTCTGGATTGACTTGTACACTCCTGTCGATGCTTGTTTTCTTCCATCCAATCAAGTTTGCAATTACATTCACACTTGGGAATCTGCTTTCACTTGGCAGCACAGCATTCCTCATTGGACCTAAACGGCAAGTCACAATGATGCTGGATCCTGTTCGCATTTATGCGACAGCCATATACATTGCGAGCATAATAATTGCATTGTTTTGTGCTCTCTATGCTCATAACAAAATATTGACACTTTTGGCAATAATTTTGGAATTTGGTGCATTGGTTTGGTATAGCTTGAGCTACATTCCTTTTGCAAGGTCCATGGTATCGAAGATCATGCTAGCTTGTTTTGACACTGAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

199

Amino Acids

22.33

Weight (kDa)

5.89

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 75 - 181 3.3e-32 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AclWI GGATC 2 cut(s) 386, 399
AcsI RAATTY 2 cut(s) 503, 593
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 2 cut(s) 53, 187
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 3 cut(s) 528, 534, 578
AluI AGCT 3 cut(s) 528, 534, 578
Alw21I GWGCWC 1 cut(s) 457
AlwI GGATC 2 cut(s) 386, 399
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 2 cut(s) 157, 342
ApoI RAATTY 2 cut(s) 503, 593
AspS9I GGNCC 2 cut(s) 362, 552
AsuHPI GGTGA 2 cut(s) 43, 70
AsuNHI GCTAGC 1 cut(s) 574
AvaII GGWCC 2 cut(s) 362, 552
BamHI GGATCC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 2 cut(s) 169, 354
BccI CCATC 2 cut(s) 242, 297
BceAI ACGGC 1 cut(s) 386
BcgI CGANNNNNNTGC 2 cut(s) 553, 587
BciT130I CCWGG 1 cut(s) 164
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 1 cut(s) 155
BisI GCNGC 3 cut(s) 135, 158, 343
BlsI GCNGC 3 cut(s) 136, 159, 344
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 2 cut(s) 362, 552
BmgT120I GGNCC 2 cut(s) 362, 552
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 3 cut(s) 81, 264, 375
BmtI GCTAGC 1 cut(s) 578
BpuEI CTTGAG 1 cut(s) 550
BsaJI CCNNGG 1 cut(s) 555
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 423
BseXI GCAGC 2 cut(s) 169, 354
BsgI GTGCAG 1 cut(s) 181
BshFI GGCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 457
BslI CCNNNNNNNGG 1 cut(s) 216
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 457
Bsp1407I TGTACA 1 cut(s) 260
Bsp143I GATC 2 cut(s) 391, 567
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 1 cut(s) 135
BspANI GGCC 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 393
BspMAI CTGCAG 1 cut(s) 159
BspOI GCTAGC 1 cut(s) 578
BspPI GGATC 2 cut(s) 386, 399
BsrDI GCAATG 1 cut(s) 423
BsrGI TGTACA 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 2 cut(s) 391, 567
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 1 cut(s) 164
Bst6I CTCTTC 1 cut(s) 145
BstAUI TGTACA 1 cut(s) 260
BstC8I GCNNGC 2 cut(s) 430, 576
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 2 cut(s) 394, 570
BstMBI GATC 2 cut(s) 391, 567
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstSFI CTRYAG 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 169, 354
BstX2I RGATCY 1 cut(s) 391
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 1 cut(s) 391
BsuRI GGCC 1 cut(s) 110
BtgI CCRYGG 1 cut(s) 555
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 588
Cac8I GCNNGC 2 cut(s) 430, 576
Cfr13I GGNCC 2 cut(s) 362, 552
Csp6I GTAC 1 cut(s) 261
CviAII CATG 3 cut(s) 175, 556, 571
CviQI GTAC 1 cut(s) 261
DpnI GATC 2 cut(s) 393, 569
DpnII GATC 2 cut(s) 391, 567
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 555
Eco47I GGWCC 2 cut(s) 362, 552
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 3 cut(s) 178, 559, 574
FatI CATG 3 cut(s) 174, 555, 570
Fnu4HI GCNGC 3 cut(s) 135, 158, 343
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 135, 158, 343
FspBI CTAG 1 cut(s) 575
GluI GCNGC 3 cut(s) 135, 158, 343
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 3 cut(s) 178, 559, 574
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 2 cut(s) 167, 325
HphI GGTGA 2 cut(s) 43, 70
Hpy166II GTNNAC 4 cut(s) 61, 67, 207, 263
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 1 cut(s) 249
Hpy8I GTNNAC 4 cut(s) 61, 67, 207, 263
Hpy99I CGWCG 4 cut(s) 101, 122, 125, 128
HpyAV CCTTC 2 cut(s) 22, 85
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 6 cut(s) 157, 198, 305, 443, 512, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 3 cut(s) 178, 559, 574
Kzo9I GATC 2 cut(s) 391, 567
LpnPI CCDG 6 cut(s) 149, 176, 234, 281, 374, 408
Lsp1109I GCAGC 2 cut(s) 169, 354
LweI GCATC 3 cut(s) 81, 264, 375
MaeI CTAG 1 cut(s) 575
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 376
MalI GATC 2 cut(s) 393, 569
MboI GATC 2 cut(s) 391, 567
MboII GAAGA 9 cut(s) 19, 46, 100, 132, 135, 138, 140, 277, 577
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 5 cut(s) 306, 438, 495, 503, 593
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 4 cut(s) 100, 148, 210, 365
MslI CAYNNNNRTG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 461
NcoI CCATGG 1 cut(s) 555
NdeII GATC 2 cut(s) 391, 567
NheI GCTAGC 1 cut(s) 574
NlaIII CATG 3 cut(s) 178, 559, 574
NlaIV GGNNCC 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 1 cut(s) 350
PfeI GAWTC 2 cut(s) 167, 325
PkrI GCNGC 3 cut(s) 136, 159, 344
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 2 cut(s) 362, 552
PstI CTGCAG 1 cut(s) 159
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 383
SatI GCNGC 3 cut(s) 135, 158, 343
Sau3AI GATC 2 cut(s) 391, 567
Sau96I GGNCC 2 cut(s) 362, 552
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 457
SfaNI GCATC 3 cut(s) 81, 264, 375
SfcI CTRYAG 1 cut(s) 155
SinI GGWCC 2 cut(s) 362, 552
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 5 cut(s) 306, 438, 495, 503, 593
SsiI CCGC 1 cut(s) 135
SspI AATATT 1 cut(s) 477
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 555
TaiI ACGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 78, 272, 563
TasI AATT 5 cut(s) 306, 438, 495, 503, 593
TatI WGTACW 1 cut(s) 260
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 2 cut(s) 167, 325
TscAI CASTG 1 cut(s) 595
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 2 cut(s) 157, 342
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 3 cut(s) 53, 101, 163
TspRI CASTG 1 cut(s) 595
VpaK11BI GGWCC 2 cut(s) 362, 552
XapI RAATTY 2 cut(s) 503, 593
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.