Rh3DG295400

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0012878
Physical Location & Seq
Reverse (-)
30706526 .. 30709263
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG295400.1

Sequence Viewer

Length: 501 bp
ATGGAGAAGATTAGCCAAGCCTTCGAGAAGGTGAAGATGAACCAAGCCTTTGAAAAGGTGAACGTCAACCAAGCCTTCGACAAGATGAAGATGCTCGTCGGAATGGAGGCCGCCGACGACGACGACGAAGAAGCAGCCTCTTCTTCTTCTGCTCTGCAGCACCAGGATTCTTTCATGGACGACTTCAATCGCAACTGCACCTTGTCCACCAAACAGAGGTTTTATGGCTTCGCCATCTGCTTGGCTTCTGGATTGACTTGTACACTCCTGTCGATGCTTGTTTTCTTCCATCCAATCAAGTTTGCAATTACATTCACACTTGGGAATCTGCTTTCACTTGGCAGCACAGCATTCCTCATTGGACCTAAACGGCAAGTCACAATGATGCTGGATCCTGTTCGCATTTATGCGACAGCCATATACATTGCGAGCATAATAATTGCATTGTTTTGTGCTCTCTATGTAAGTTTCATTATGGCTTCGCCCTCTTTTACAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

166

Amino Acids

18.44

Weight (kDa)

5.61

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 75 - 156 4.5e-21 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 111
AclWI GGATC 2 cut(s) 386, 399
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 2 cut(s) 53, 187
AjnI CCWGG 1 cut(s) 162
Alw21I GWGCWC 1 cut(s) 457
AlwI GGATC 2 cut(s) 386, 399
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 3 cut(s) 134, 157, 342
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 2 cut(s) 43, 70
AvaII GGWCC 1 cut(s) 362
BamHI GGATCC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 3 cut(s) 146, 169, 354
BccI CCATC 2 cut(s) 242, 297
BceAI ACGGC 1 cut(s) 386
BciT130I CCWGG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 155
BisI GCNGC 4 cut(s) 111, 135, 158, 343
BlsI GCNGC 4 cut(s) 112, 136, 159, 344
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 3 cut(s) 81, 264, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 164
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 423
BseXI GCAGC 3 cut(s) 146, 169, 354
BsgI GTGCAG 1 cut(s) 181
BshFI GGCC 1 cut(s) 110
BsiHKAI GWGCWC 1 cut(s) 457
BslI CCNNNNNNNGG 1 cut(s) 216
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 457
Bsp1407I TGTACA 1 cut(s) 260
Bsp143I GATC 1 cut(s) 391
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 393
BspMAI CTGCAG 1 cut(s) 159
BspPI GGATC 2 cut(s) 386, 399
BsrDI GCAATG 1 cut(s) 423
BsrGI TGTACA 1 cut(s) 260
BssMI GATC 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 496
Bst6I CTCTTC 1 cut(s) 145
BstAUI TGTACA 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 430
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 1 cut(s) 394
BstMBI GATC 1 cut(s) 391
BstNI CCWGG 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 162
BstSFI CTRYAG 1 cut(s) 155
BstV1I GCAGC 3 cut(s) 146, 169, 354
BstX2I RGATCY 1 cut(s) 391
BstXI CCANNNNNNTGG 1 cut(s) 241
BstYI RGATCY 1 cut(s) 391
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 430
Cfr13I GGNCC 1 cut(s) 362
Csp6I GTAC 1 cut(s) 261
CviAII CATG 1 cut(s) 175
CviQI GTAC 1 cut(s) 261
DpnI GATC 1 cut(s) 393
DpnII GATC 1 cut(s) 391
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 178
FaiI YATR 8 cut(s) 176, 225, 408, 419, 421, 434, 462, 476
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 4 cut(s) 111, 135, 158, 343
FokI GGATG 1 cut(s) 276
Fsp4HI GCNGC 4 cut(s) 111, 135, 158, 343
GluI GCNGC 4 cut(s) 111, 135, 158, 343
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 1 cut(s) 178
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 2 cut(s) 167, 325
HphI GGTGA 2 cut(s) 43, 70
Hpy166II GTNNAC 4 cut(s) 61, 67, 207, 263
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 2 cut(s) 25, 249
Hpy8I GTNNAC 4 cut(s) 61, 67, 207, 263
Hpy99I CGWCG 5 cut(s) 101, 119, 122, 125, 128
HpyAV CCTTC 3 cut(s) 22, 31, 85
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 4 cut(s) 157, 198, 305, 443
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 1 cut(s) 178
Kzo9I GATC 1 cut(s) 391
LpnPI CCDG 6 cut(s) 149, 176, 234, 281, 374, 408
Lsp1109I GCAGC 3 cut(s) 146, 169, 354
LweI GCATC 3 cut(s) 81, 264, 375
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 393
MboI GATC 1 cut(s) 391
MboII GAAGA 8 cut(s) 19, 46, 100, 132, 135, 138, 140, 277
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 2 cut(s) 306, 438
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 5 cut(s) 100, 148, 210, 365, 496
MseI TTAA 1 cut(s) 499
MslI CAYNNNNRTG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 1 cut(s) 164
NdeII GATC 1 cut(s) 391
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PctI GAATGC 1 cut(s) 350
PfeI GAWTC 2 cut(s) 167, 325
PkrI GCNGC 4 cut(s) 112, 136, 159, 344
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 1 cut(s) 362
PstI CTGCAG 1 cut(s) 159
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 1 cut(s) 499
SatI GCNGC 4 cut(s) 111, 135, 158, 343
Sau3AI GATC 1 cut(s) 391
Sau96I GGNCC 1 cut(s) 362
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 1 cut(s) 457
SetI ASST 6 cut(s) 33, 60, 66, 203, 221, 367
SfaNI GCATC 3 cut(s) 81, 264, 375
SfcI CTRYAG 1 cut(s) 155
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 383
Sse9I AATT 2 cut(s) 306, 438
SsiI CCGC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 496
TaiI ACGT 1 cut(s) 66
TaqI TCGA 3 cut(s) 24, 78, 272
TasI AATT 2 cut(s) 306, 438
TatI WGTACW 1 cut(s) 260
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 2 cut(s) 167, 325
Tru1I TTAA 1 cut(s) 499
Tru9I TTAA 1 cut(s) 499
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 3 cut(s) 134, 157, 342
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 4 cut(s) 53, 101, 163, 460
VpaK11BI GGWCC 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.