Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012878

Physical Location & Seq

Genomic Coordinates Forward (+)

25416738 .. 25423449

Gene Structure 6712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G288900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGAAGATGAACCAGGCCTATGAGAAGGTGAAGATGCTGGTGGGTATGGAGGTGGATGAGGACGACCATGAAGCTGCTTCTTCTTCTGCTCTACAGGATACCAACTTCATCGACGACTTCAATCGCAACTGCACATTGTCCACCAAACAGAGGTTTTACGGTTTCGCCATATGCTTGGCTGCCGGTTTAACTTGTACGCTCTTGTCGATGCTTGTTTTCTTCCATCCAATCAAGTTTGGAATTACATTCACACTGGGAAATCTTCTTTCACTTGGGAGCACAGCATTCCTCATTGGCCCTAAACGGCAAGTGACAATGATGCTTGACCCTGTCCGTATTTATGCAACAGCCATATACCTTGCAAGTATAATAATTGCCTTGTTTTGTGCTCTTTACGTTCATAACAAGTTATTGACACTTTTGGCGATACTTTTAGAGTTTGGTGCATTGATTTGGTATAGCTTGAGCTACATCCCTTTTGCTAGAGCCATGTTATCCAAGATCATGGTAGCTTGTTTTGACACTGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Got1

Protein Analysis

179

Amino Acids

19.94

Weight (kDa)

5.86

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23550
fragaria_vesca	FvH4_1g25890
malus_domestica	MD15G1140900.v1.1
prunus_persica	Prupe.4G288900_v2.0.a1 Prupe.4G288900_v2.0.a1
pyrus_communis	pycom15g12730
rosa_chinensis	RchiOBHm_Chr3g0485031
rosa_laevigata	RLG00000023174
rosa_multiflora	Rmu_sc0006040.1_g000017 Rmu_sc0008046.1_g000005 Rmu_sc0039594.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397240
rosa_rugosa	Rorug03G0215200 Rorug03G0215300
rosa_samantha	Rh3AG265700 Rh3BG301300 Rh3CG299600 Rh3DG295400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	4 cut(s)	77, 465, 471, 515
AluI	AGCT	4 cut(s)	77, 465, 471, 515
Alw21I	GWGCWC	2 cut(s)	284, 394
AoxI	GGCC	2 cut(s)	18, 298
ApeKI	GCWGC	2 cut(s)	77, 182
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	43
Bbv12I	GWGCWC	2 cut(s)	284, 394
BbvI	GCAGC	2 cut(s)	64, 169
BccI	CCATC	1 cut(s)	234
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	17
BciVI	GTATCC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	95
BfuI	GTATCC	1 cut(s)	94
BisI	GCNGC	2 cut(s)	78, 183
BlsI	GCNGC	2 cut(s)	79, 184
Bme1390I	CCNGG	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	17
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	3 cut(s)	27, 201, 312
BmuI	ACTGGG	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	17
BseGI	GGATG	3 cut(s)	64, 226, 474
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	261
BseXI	GCAGC	2 cut(s)	64, 169
BsgI	GTGCAG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	20, 300
BsiHKAI	GWGCWC	2 cut(s)	284, 394
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	20, 300
Bsp1286I	GDGCHC	2 cut(s)	284, 394
Bsp143I	GATC	1 cut(s)	504
BspANI	GGCC	2 cut(s)	20, 300
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	185
BssMI	GATC	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	64, 226, 474
BstKTI	GATC	1 cut(s)	507
BstMBI	GATC	1 cut(s)	504
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	95
BstV1I	GCAGC	2 cut(s)	64, 169
BstXI	CCANNNNNNTGG	2 cut(s)	178, 508
BsuI	GTATCC	1 cut(s)	94
BsuRI	GGCC	2 cut(s)	20, 300
BtsCI	GGATG	3 cut(s)	64, 226, 474
BtsIMutI	CAGTG	2 cut(s)	254, 525
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	3 cut(s)	71, 493, 508
CviJI	RGCY	9 cut(s)	20, 77, 182, 300, 353, 465, 471, 491, 515
CviKI_1	RGCY	9 cut(s)	20, 77, 182, 300, 353, 465, 471, 491, 515
CviQI	GTAC	1 cut(s)	198
DpnI	GATC	1 cut(s)	506
DpnII	GATC	1 cut(s)	504
Eco147I	AGGCCT	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	15
FaeI	CATG	3 cut(s)	74, 496, 511
FatI	CATG	3 cut(s)	70, 492, 507
FauNDI	CATATG	1 cut(s)	173
Fnu4HI	GCNGC	2 cut(s)	78, 183
FokI	GGATG	3 cut(s)	71, 213, 461
Fsp4HI	GCNGC	2 cut(s)	78, 183
FspBI	CTAG	1 cut(s)	486
GluI	GCNGC	2 cut(s)	78, 183
HaeIII	GGCC	2 cut(s)	20, 300
HapII	CCGG	1 cut(s)	186
Hin1II	CATG	3 cut(s)	74, 496, 511
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	144
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	4 cut(s)	135, 347, 365, 449
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	3 cut(s)	74, 496, 511
Kzo9I	GATC	1 cut(s)	504
LmnI	GCTCC	1 cut(s)	279
LpnPI	CCDG	7 cut(s)	2, 26, 29, 83, 199, 242, 345
Lsp1109I	GCAGC	2 cut(s)	64, 169
LweI	GCATC	3 cut(s)	27, 201, 312
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	506
MboI	GATC	1 cut(s)	504
MboII	GAAGA	6 cut(s)	19, 46, 75, 78, 214, 257
MhlI	GDGCHC	2 cut(s)	284, 394
MluCI	AATT	2 cut(s)	243, 375
MnlI	CCTC	4 cut(s)	46, 55, 147, 302
MseI	TTAA	1 cut(s)	191
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	17
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	1 cut(s)	504
NlaIII	CATG	3 cut(s)	74, 496, 511
NmuCI	GTSAC	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PctI	GAATGC	1 cut(s)	287
PflFI	GACNNNGTC	1 cut(s)	332
PkrI	GCNGC	2 cut(s)	79, 184
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	299
PsyI	GACNNNGTC	1 cut(s)	332
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	2 cut(s)	78, 183
Sau3AI	GATC	1 cut(s)	504
Sau96I	GGNCC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	2 cut(s)	284, 394
SetI	ASST	9 cut(s)	33, 57, 79, 158, 363, 402, 467, 473, 517
SfaNI	GCATC	3 cut(s)	27, 201, 312
SfcI	CTRYAG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	2 cut(s)	243, 375
SseBI	AGGCCT	1 cut(s)	20
SspMI	CTAG	1 cut(s)	486
StuI	AGGCCT	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	114, 209
TasI	AATT	2 cut(s)	243, 375
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	2 cut(s)	261, 532
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	77, 182
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	4 cut(s)	26, 87, 100, 392
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	2 cut(s)	261, 532
Tth111I	GACNNNGTC	1 cut(s)	332
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.